Wall clock time and date at job start Mon Mar 30 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47235 * 2 1 4 4 H 1.09003 * 109.47222 * 177.29433 * 3 2 1 5 5 C 1.50701 * 109.47513 * 297.29787 * 3 2 1 6 6 H 1.07993 * 120.00516 * 119.99517 * 5 3 2 7 7 C 1.37885 * 119.99361 * 300.00136 * 5 3 2 8 8 N 1.31517 * 119.99460 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00133 * 359.97438 * 7 5 3 10 10 H 1.48503 * 109.47235 * 90.00427 * 9 7 5 11 11 H 1.48503 * 109.46890 * 210.00330 * 9 7 5 12 12 H 1.48495 * 109.47201 * 330.00035 * 9 7 5 13 13 N 1.46909 * 109.47048 * 57.29338 * 3 2 1 14 14 C 1.46845 * 110.99524 * 54.37946 * 13 3 2 15 15 C 1.53041 * 109.51836 * 185.83801 * 14 13 3 16 16 C 1.53118 * 109.27903 * 300.81724 * 15 14 13 17 17 O 1.42906 * 109.52282 * 177.55786 * 16 15 14 18 18 C 1.42905 * 113.99283 * 90.31624 * 17 16 15 19 19 C 1.53001 * 109.46560 * 179.97438 * 18 17 16 20 20 O 1.42902 * 109.47164 * 65.00628 * 19 18 17 21 21 C 1.53121 * 109.16104 * 57.65844 * 16 15 14 22 22 C 1.46849 * 110.99731 * 178.58352 * 13 3 2 23 23 H 1.09003 * 109.46959 * 55.27745 * 1 2 3 24 24 H 1.09001 * 109.46972 * 295.27476 * 1 2 3 25 25 H 1.09000 * 109.47260 * 175.27599 * 1 2 3 26 26 H 1.08997 * 109.46764 * 120.00064 * 2 1 3 27 27 H 1.08996 * 109.46805 * 239.99833 * 2 1 3 28 28 H 0.96996 * 119.99393 * 179.97438 * 8 7 5 29 29 H 1.08998 * 109.46302 * 305.84679 * 14 13 3 30 30 H 1.08998 * 109.46693 * 65.82654 * 14 13 3 31 31 H 1.09003 * 109.50214 * 180.87835 * 15 14 13 32 32 H 1.08998 * 109.50278 * 60.76257 * 15 14 13 33 33 H 1.09000 * 109.52343 * 297.75198 * 16 15 14 34 34 H 1.08998 * 109.47644 * 300.00151 * 18 17 16 35 35 H 1.08999 * 109.47008 * 60.00317 * 18 17 16 36 36 H 1.09003 * 109.47354 * 184.99852 * 19 18 17 37 37 H 1.08993 * 109.47548 * 305.00178 * 19 18 17 38 38 H 0.96698 * 114.00100 * 179.97438 * 20 19 18 39 39 H 1.08994 * 109.50313 * 182.40928 * 21 16 15 40 40 H 1.08997 * 109.50351 * 62.27928 * 21 16 15 41 41 H 1.09003 * 109.46218 * 294.17881 * 22 13 3 42 42 H 1.09000 * 109.46519 * 54.14995 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1290 1.4428 0.0485 5 6 1.5932 2.1333 -1.2626 6 1 0.9688 3.0126 -1.2050 7 6 1.9815 1.6426 -2.4913 8 7 1.5920 2.2459 -3.5931 9 14 3.0620 0.1221 -2.5907 10 1 2.2062 -1.0899 -2.6551 11 1 3.9087 0.1954 -3.8085 12 1 3.9299 0.0520 -1.3879 13 7 1.4977 2.1536 1.1655 14 6 1.8010 1.4338 2.4090 15 6 1.0999 2.1223 3.5823 16 6 1.5823 3.5723 3.6792 17 8 0.8889 4.2365 4.7376 18 6 1.5414 4.1470 6.0058 19 6 0.7153 4.8897 7.0578 20 8 -0.5400 4.2293 7.2311 21 6 1.2984 4.2859 2.3545 22 6 1.9938 3.5348 1.2168 23 1 -0.3633 0.5854 -0.8447 24 1 -0.3633 0.4388 0.9293 25 1 -0.3634 -1.0242 -0.0846 26 1 1.8933 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8655 1.9009 -4.4574 29 1 1.4490 0.4054 2.3285 30 1 2.8780 1.4370 2.5771 31 1 1.3378 1.5971 4.5073 32 1 0.0219 2.1073 3.4216 33 1 2.6538 3.5871 3.8786 34 1 1.6376 3.0996 6.2918 35 1 2.5317 4.5973 5.9375 36 1 1.2553 4.8978 8.0047 37 1 0.5443 5.9145 6.7284 38 1 -1.1170 4.6465 7.8855 39 1 1.6782 5.3064 2.4023 40 1 0.2236 4.3050 2.1745 41 1 3.0699 3.5279 1.3904 42 1 1.7819 4.0322 0.2704 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128981331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:27 Heat of formation + Delta-G solvation = -116.519696 kcal Electronic energy + Delta-G solvation = -20417.127905 eV Core-core repulsion = 17396.286214 eV Total energy + Delta-G solvation = -3020.841691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.54303 -38.90549 -37.42106 -35.81332 -33.93674 -32.16911 -31.66693 -30.10156 -28.56954 -25.41171 -24.32784 -23.81412 -23.10650 -21.48480 -20.56448 -18.56235 -18.43533 -17.97758 -17.32425 -16.46554 -16.02302 -15.84946 -15.44286 -15.32473 -15.16774 -14.95812 -14.62175 -14.21114 -13.97038 -13.76319 -13.29932 -13.19404 -12.91314 -12.78546 -12.47767 -12.26189 -12.15581 -11.99959 -11.89298 -11.85162 -11.55818 -11.38965 -11.20169 -10.92171 -10.87378 -10.64873 -10.30889 -8.93434 -8.24366 -6.24914 1.30522 1.34500 1.43863 2.33502 2.68521 3.08912 3.20971 3.44193 3.84641 3.89395 4.13217 4.24038 4.25514 4.31241 4.35196 4.39124 4.43076 4.47936 4.57111 4.61032 4.65940 4.69799 4.82580 4.88643 4.96020 4.97414 5.04469 5.13717 5.20508 5.23748 5.28082 5.34566 5.42706 5.66860 5.77064 6.08473 6.34296 6.43901 6.74995 6.80846 6.95921 7.38570 8.92169 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.040637 B = 0.004683 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.868386 B = 5977.722534 C = 6210.546076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.124 4.124 3 C 0.189 3.811 4 H -0.014 1.014 5 C -0.489 4.489 6 H 0.041 0.959 7 C 0.016 3.984 8 N -0.948 5.948 9 Si 0.940 3.060 10 H -0.266 1.266 11 H -0.301 1.301 12 H -0.253 1.253 13 N -0.530 5.530 14 C 0.051 3.949 15 C -0.124 4.124 16 C 0.097 3.903 17 O -0.394 6.394 18 C 0.048 3.952 19 C 0.077 3.923 20 O -0.594 6.594 21 C -0.102 4.102 22 C 0.070 3.930 23 H 0.034 0.966 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.035 0.965 28 H 0.264 0.736 29 H 0.084 0.916 30 H 0.028 0.972 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.396 0.604 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.025 0.975 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 1.427 21.860 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.161 4.161 3 C 0.081 3.919 4 H 0.004 0.996 5 C -0.527 4.527 6 H 0.059 0.941 7 C -0.181 4.181 8 N -0.589 5.589 9 Si 0.768 3.232 10 H -0.192 1.192 11 H -0.229 1.229 12 H -0.177 1.177 13 N -0.256 5.256 14 C -0.077 4.077 15 C -0.162 4.162 16 C 0.039 3.961 17 O -0.314 6.314 18 C -0.028 4.028 19 C 0.000 4.000 20 O -0.402 6.402 21 C -0.140 4.140 22 C -0.058 4.058 23 H 0.053 0.947 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.245 0.755 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.506 1.154 21.162 21.247 hybrid contribution 1.215 -0.221 -0.389 1.294 sum 2.721 0.934 20.773 20.971 Atomic orbital electron populations 1.21385 0.94689 0.99574 1.01868 1.21898 0.98146 0.96764 0.99332 1.19545 0.91597 0.91662 0.89088 0.99621 1.21058 1.30087 1.11920 0.89672 0.94105 1.25658 0.97288 0.99868 0.95300 1.70030 1.47933 1.42700 0.98266 0.85978 0.79357 0.80657 0.77176 1.19208 1.22857 1.17740 1.61791 1.59933 1.01878 1.01950 1.22176 0.97460 0.98760 0.89304 1.21959 1.01122 0.95588 0.97493 1.22090 0.95432 0.91676 0.86892 1.87969 1.50307 1.75748 1.17355 1.22861 0.95938 1.00695 0.83336 1.22314 0.84965 0.95367 0.97378 1.86538 1.30040 1.57589 1.66045 1.21560 1.01360 0.98819 0.92245 1.21850 0.95738 0.89816 0.98408 0.94696 0.92037 0.93231 0.91458 0.94638 0.92733 0.89776 0.95342 0.90221 0.92005 0.91428 0.92908 0.90148 0.89302 0.92639 0.75474 0.90285 0.92205 0.95679 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 9.41 71.98 0.68 -4.09 16 2 C -0.12 -5.17 4.64 30.59 0.14 -5.03 16 3 C 0.19 8.78 1.35 44.16 0.06 8.84 16 4 H -0.01 -0.65 7.20 -2.39 -0.02 -0.67 16 5 C -0.49 -27.52 7.23 25.60 0.19 -27.33 16 6 H 0.04 2.59 7.05 -2.91 -0.02 2.57 16 7 C 0.02 0.91 5.45 84.66 0.46 1.37 16 8 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 9 Si 0.94 45.11 24.40 68.60 1.67 46.78 16 10 H -0.27 -12.19 6.85 99.48 0.68 -11.51 16 11 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 12 H -0.25 -11.35 6.53 99.48 0.65 -10.70 16 13 N -0.53 -21.46 3.77 -875.48 -3.30 -24.76 16 14 C 0.05 1.65 4.83 86.33 0.42 2.06 16 15 C -0.12 -3.54 5.72 30.65 0.18 -3.37 16 16 C 0.10 2.70 2.68 30.67 0.08 2.79 16 17 O -0.39 -10.96 9.96 -144.34 -1.44 -12.40 16 18 C 0.05 0.95 6.13 71.98 0.44 1.39 16 19 C 0.08 1.21 7.43 71.98 0.53 1.75 16 20 O -0.59 -11.62 13.62 -144.34 -1.97 -13.59 16 21 C -0.10 -3.28 5.75 30.65 0.18 -3.11 16 22 C 0.07 2.71 5.27 86.33 0.45 3.16 16 23 H 0.03 1.64 7.15 -2.39 -0.02 1.63 16 24 H 0.06 2.35 7.16 -2.39 -0.02 2.33 16 25 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 2.38 6.37 -2.39 -0.02 2.36 16 27 H 0.04 1.57 3.23 -2.39 -0.01 1.56 16 28 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.08 2.62 5.58 -2.39 -0.01 2.60 16 30 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.93 7.96 -2.39 -0.02 1.92 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 1.68 7.79 -2.39 -0.02 1.66 16 34 H 0.05 1.04 7.96 -2.39 -0.02 1.02 16 35 H 0.08 1.22 8.09 -2.39 -0.02 1.21 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.40 3.68 9.12 -74.06 -0.68 3.00 16 39 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.91 16 42 H 0.06 2.79 6.39 -2.39 -0.02 2.77 16 Total: -1.00 -69.63 316.56 -0.69 -70.32 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.24 Total: 14.21 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: 3.81 Total: -21.57 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -3.00 Total: -83.75 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -3.40 Total: -25.99 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.67 Total: 46.78 kcal Total: -69.63 -0.69 -70.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128981331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.196 kcal (2) G-P(sol) polarization free energy of solvation -69.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds