Wall clock time and date at job start Mon Mar 30 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47484 * 2 1 4 4 H 1.08995 * 109.46840 * 56.11245 * 3 2 1 5 5 C 1.50696 * 109.46906 * 296.11584 * 3 2 1 6 6 H 1.08006 * 120.00154 * 276.74286 * 5 3 2 7 7 C 1.37877 * 120.00387 * 96.74984 * 5 3 2 8 8 N 1.31517 * 119.99736 * 16.38783 * 7 5 3 9 9 Si 1.86797 * 120.00230 * 196.39323 * 7 5 3 10 10 H 1.48500 * 109.47438 * 59.99428 * 9 7 5 11 11 H 1.48496 * 109.47439 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47344 * 299.99863 * 9 7 5 13 13 N 1.46894 * 109.47321 * 176.11528 * 3 2 1 14 14 C 1.46900 * 111.00191 * 62.07861 * 13 3 2 15 15 C 1.46912 * 110.99727 * 298.12976 * 13 3 2 16 16 C 1.52992 * 109.47070 * 282.41719 * 15 13 3 17 17 O 1.42900 * 109.54523 * 66.01931 * 16 15 13 18 18 C 1.53183 * 109.54336 * 305.84085 * 16 15 13 19 19 C 1.53108 * 109.15770 * 183.24017 * 18 16 15 20 20 O 1.42910 * 109.48413 * 57.47665 * 19 18 16 21 21 C 1.42904 * 114.09335 * 298.88939 * 20 19 18 22 22 C 1.53091 * 109.41848 * 61.16027 * 21 20 19 23 23 H 1.09000 * 109.47223 * 186.68443 * 1 2 3 24 24 H 1.09000 * 109.46398 * 306.68417 * 1 2 3 25 25 H 1.08998 * 109.47194 * 66.67875 * 1 2 3 26 26 H 1.09000 * 109.46650 * 239.99856 * 2 1 3 27 27 H 1.08994 * 109.46897 * 120.00280 * 2 1 3 28 28 H 0.97004 * 119.99892 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46673 * 65.63486 * 14 13 3 30 30 H 1.08998 * 109.47600 * 185.63029 * 14 13 3 31 31 H 1.08997 * 109.47091 * 305.63405 * 14 13 3 32 32 H 1.09004 * 109.46684 * 42.41805 * 15 13 3 33 33 H 1.08999 * 109.46651 * 162.41687 * 15 13 3 34 34 H 0.96702 * 114.00162 * 180.02562 * 17 16 15 35 35 H 1.08998 * 109.52295 * 303.05978 * 18 16 15 36 36 H 1.09000 * 109.52093 * 63.25156 * 18 16 15 37 37 H 1.08998 * 109.40786 * 297.49991 * 19 18 16 38 38 H 1.08995 * 109.48970 * 177.50778 * 19 18 16 39 39 H 1.08998 * 109.48168 * 301.17169 * 21 20 19 40 40 H 1.09007 * 109.48111 * 181.14941 * 21 20 19 41 41 H 1.09000 * 109.51671 * 182.48407 * 22 21 20 42 42 H 1.08997 * 109.57426 * 62.32696 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 1 1.6211 1.9760 0.8531 5 6 1.6180 2.1245 -1.2757 6 1 2.2033 1.9986 -2.1747 7 6 0.4846 2.9094 -1.2955 8 7 -0.0447 3.3285 -0.1668 9 14 -0.2993 3.3773 -2.9252 10 1 -0.7024 2.1467 -3.6521 11 1 -1.4971 4.2186 -2.6750 12 1 0.6782 4.1381 -3.7443 13 7 3.5061 1.4435 0.0938 14 6 4.1084 0.7745 -1.0670 15 6 3.9537 0.8247 1.3488 16 6 3.7723 1.8165 2.4995 17 8 2.3797 2.0651 2.7013 18 6 4.4836 3.1302 2.1606 19 6 4.3656 4.0868 3.3502 20 8 4.9210 3.4709 4.5141 21 6 4.2636 2.2638 4.9053 22 6 4.3794 1.2332 3.7792 23 1 -0.3634 -1.0207 0.1196 24 1 -0.3632 0.6140 0.8242 25 1 -0.3633 0.4068 -0.9437 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 -0.8423 3.8804 -0.1807 29 1 3.8995 1.3517 -1.9677 30 1 5.1866 0.7005 -0.9249 31 1 3.6861 -0.2251 -1.1699 32 1 3.3625 -0.0701 1.5437 33 1 5.0062 0.5538 1.2651 34 1 2.1908 2.6870 3.4173 35 1 5.5359 2.9326 1.9567 36 1 4.0195 3.5797 1.2827 37 1 3.3150 4.3170 3.5271 38 1 4.9077 5.0069 3.1321 39 1 3.2117 2.4702 5.1025 40 1 4.7323 1.8706 5.8076 41 1 3.8409 0.3274 4.0578 42 1 5.4292 0.9951 3.6086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161617032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:21 Heat of formation + Delta-G solvation = -90.627645 kcal Electronic energy + Delta-G solvation = -21513.546291 eV Core-core repulsion = 18493.827363 eV Total energy + Delta-G solvation = -3019.718927 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.83700 -37.34715 -35.52726 -32.90476 -31.60682 -30.98052 -30.70839 -27.55882 -26.30499 -24.39773 -23.39113 -22.68057 -21.65668 -19.58314 -18.59547 -17.07561 -16.11853 -15.83556 -15.39350 -14.95631 -14.49030 -14.34366 -14.06086 -13.93124 -13.50759 -13.11108 -12.80604 -12.24789 -12.08102 -11.65906 -11.58849 -11.37807 -11.26615 -11.02757 -10.97045 -10.81317 -10.72868 -10.62822 -10.28208 -10.16682 -10.04861 -9.68292 -9.38364 -9.19335 -9.16385 -8.68428 -8.13469 -6.94263 -5.92382 -3.87162 3.35931 3.41285 3.44649 4.01561 4.49607 4.73675 4.79910 5.03951 5.19264 5.22049 5.29559 5.35035 5.55314 5.60690 5.80067 5.86154 5.96956 6.00565 6.11214 6.17704 6.21516 6.32357 6.41605 6.45939 6.52144 6.58843 6.69721 6.82477 6.84602 7.04588 7.27884 7.36185 7.44128 7.57498 7.77773 7.97531 8.18220 8.35766 8.63471 8.80459 9.24039 9.71005 11.15676 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.024753 B = 0.007068 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.895092 B = 3960.418769 C = 4239.116647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.141 4.141 3 C 0.190 3.810 4 H 0.114 0.886 5 C -0.505 4.505 6 H 0.052 0.948 7 C 0.076 3.924 8 N -0.876 5.876 9 Si 0.875 3.125 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.525 5.525 14 C 0.031 3.969 15 C 0.060 3.940 16 C 0.143 3.857 17 O -0.528 6.528 18 C -0.165 4.165 19 C 0.053 3.947 20 O -0.390 6.390 21 C 0.060 3.940 22 C -0.183 4.183 23 H 0.014 0.986 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.025 0.975 28 H 0.258 0.742 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.014 0.986 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.355 0.645 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.318 -2.703 7.776 11.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.181 4.181 3 C 0.085 3.915 4 H 0.131 0.869 5 C -0.543 4.543 6 H 0.070 0.930 7 C -0.127 4.127 8 N -0.513 5.513 9 Si 0.703 3.297 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.247 5.247 14 C -0.118 4.118 15 C -0.069 4.069 16 C 0.102 3.898 17 O -0.333 6.333 18 C -0.202 4.202 19 C -0.023 4.023 20 O -0.309 6.309 21 C -0.017 4.017 22 C -0.221 4.221 23 H 0.033 0.967 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.202 0.798 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.070 0.930 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.432 -2.433 7.444 10.797 hybrid contribution -0.893 -0.442 -0.707 1.222 sum 6.539 -2.875 6.737 9.819 Atomic orbital electron populations 1.21402 0.96370 0.97252 1.02681 1.22210 0.96540 1.02215 0.97128 1.20006 0.80383 0.90358 1.00764 0.86888 1.20983 1.08874 1.29384 0.95064 0.93034 1.24833 0.97661 0.94783 0.95461 1.70002 1.21679 1.34371 1.25243 0.86946 0.79041 0.78290 0.85409 1.20462 1.21465 1.20456 1.62626 1.12503 1.50961 0.98633 1.22257 0.96397 0.96840 0.96265 1.22085 0.98672 0.94850 0.91271 1.21132 0.81828 0.94356 0.92501 1.86888 1.22406 1.67012 1.56983 1.22650 1.01404 0.96529 0.99661 1.22726 0.98420 0.96139 0.85005 1.87891 1.58489 1.38638 1.45840 1.22522 0.97141 0.85096 0.96919 1.22881 1.02416 0.99683 0.97153 0.96683 0.92823 0.92571 0.94777 0.95670 0.93242 0.91088 0.94485 0.96732 0.94240 0.91958 0.79763 0.91502 0.87554 0.93010 0.88969 0.93194 0.89181 0.90578 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.36 37.16 0.35 -2.39 16 2 C -0.14 -3.24 4.77 -26.73 -0.13 -3.37 16 3 C 0.19 4.63 1.91 -68.87 -0.13 4.50 16 4 H 0.11 3.03 4.47 -51.93 -0.23 2.80 16 5 C -0.50 -13.56 7.36 -34.44 -0.25 -13.82 16 6 H 0.05 1.40 6.13 -52.48 -0.32 1.08 16 7 C 0.08 2.06 4.41 -17.82 -0.08 1.98 16 8 N -0.88 -24.50 12.80 55.43 0.71 -23.79 16 9 Si 0.88 21.18 29.57 -169.99 -5.03 16.15 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.52 -11.17 3.75 -236.29 -0.89 -12.06 16 14 C 0.03 0.61 8.95 60.06 0.54 1.15 16 15 C 0.06 1.10 4.23 -3.82 -0.02 1.08 16 16 C 0.14 2.37 0.88 -90.44 -0.08 2.29 16 17 O -0.53 -9.95 10.16 -35.23 -0.36 -10.31 16 18 C -0.16 -2.68 4.87 -26.58 -0.13 -2.81 16 19 C 0.05 0.76 6.59 37.21 0.25 1.01 16 20 O -0.39 -5.58 10.77 -35.23 -0.38 -5.96 16 21 C 0.06 0.74 6.59 37.20 0.25 0.98 16 22 C -0.18 -2.44 5.15 -26.59 -0.14 -2.58 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.06 1.38 7.01 -51.93 -0.36 1.01 16 26 H 0.03 0.77 6.53 -51.93 -0.34 0.43 16 27 H 0.02 0.55 5.96 -51.93 -0.31 0.24 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 29 H 0.07 1.49 6.37 -51.93 -0.33 1.16 16 30 H 0.04 0.62 7.83 -51.93 -0.41 0.22 16 31 H 0.01 0.28 6.17 -51.93 -0.32 -0.04 16 32 H 0.04 0.76 5.62 -51.93 -0.29 0.47 16 33 H 0.06 1.01 7.71 -51.93 -0.40 0.61 16 34 H 0.36 5.67 5.97 45.56 0.27 5.94 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.11 2.09 7.58 -51.93 -0.39 1.69 16 37 H 0.05 0.73 6.93 -51.93 -0.36 0.37 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.58 6.93 -51.93 -0.36 0.22 16 40 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 41 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -28.81 309.91 -7.10 -35.91 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.25 Total: 7.36 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 0.42 Total: -11.97 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.18 Total: -35.85 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.74 Total: -16.27 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.81 -7.10 -35.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161617032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.719 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds