Wall clock time and date at job start Mon Mar 30 2020 05:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47484 * 2 1 4 4 H 1.08995 * 109.46840 * 56.11245 * 3 2 1 5 5 C 1.50696 * 109.46906 * 296.11584 * 3 2 1 6 6 H 1.08006 * 120.00154 * 276.74286 * 5 3 2 7 7 C 1.37877 * 120.00387 * 96.74984 * 5 3 2 8 8 N 1.31517 * 119.99736 * 16.38783 * 7 5 3 9 9 Si 1.86797 * 120.00230 * 196.39323 * 7 5 3 10 10 H 1.48500 * 109.47438 * 59.99428 * 9 7 5 11 11 H 1.48496 * 109.47439 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47344 * 299.99863 * 9 7 5 13 13 N 1.46894 * 109.47321 * 176.11528 * 3 2 1 14 14 C 1.46900 * 111.00191 * 62.07861 * 13 3 2 15 15 C 1.46912 * 110.99727 * 298.12976 * 13 3 2 16 16 C 1.52992 * 109.47070 * 282.41719 * 15 13 3 17 17 O 1.42900 * 109.54523 * 66.01931 * 16 15 13 18 18 C 1.53183 * 109.54336 * 305.84085 * 16 15 13 19 19 C 1.53108 * 109.15770 * 183.24017 * 18 16 15 20 20 O 1.42910 * 109.48413 * 57.47665 * 19 18 16 21 21 C 1.42904 * 114.09335 * 298.88939 * 20 19 18 22 22 C 1.53091 * 109.41848 * 61.16027 * 21 20 19 23 23 H 1.09000 * 109.47223 * 186.68443 * 1 2 3 24 24 H 1.09000 * 109.46398 * 306.68417 * 1 2 3 25 25 H 1.08998 * 109.47194 * 66.67875 * 1 2 3 26 26 H 1.09000 * 109.46650 * 239.99856 * 2 1 3 27 27 H 1.08994 * 109.46897 * 120.00280 * 2 1 3 28 28 H 0.97004 * 119.99892 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.46673 * 65.63486 * 14 13 3 30 30 H 1.08998 * 109.47600 * 185.63029 * 14 13 3 31 31 H 1.08997 * 109.47091 * 305.63405 * 14 13 3 32 32 H 1.09004 * 109.46684 * 42.41805 * 15 13 3 33 33 H 1.08999 * 109.46651 * 162.41687 * 15 13 3 34 34 H 0.96702 * 114.00162 * 180.02562 * 17 16 15 35 35 H 1.08998 * 109.52295 * 303.05978 * 18 16 15 36 36 H 1.09000 * 109.52093 * 63.25156 * 18 16 15 37 37 H 1.08998 * 109.40786 * 297.49991 * 19 18 16 38 38 H 1.08995 * 109.48970 * 177.50778 * 19 18 16 39 39 H 1.08998 * 109.48168 * 301.17169 * 21 20 19 40 40 H 1.09007 * 109.48111 * 181.14941 * 21 20 19 41 41 H 1.09000 * 109.51671 * 182.48407 * 22 21 20 42 42 H 1.08997 * 109.57426 * 62.32696 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4425 0.0000 4 1 1.6211 1.9760 0.8531 5 6 1.6180 2.1245 -1.2757 6 1 2.2033 1.9986 -2.1747 7 6 0.4846 2.9094 -1.2955 8 7 -0.0447 3.3285 -0.1668 9 14 -0.2993 3.3773 -2.9252 10 1 -0.7024 2.1467 -3.6521 11 1 -1.4971 4.2186 -2.6750 12 1 0.6782 4.1381 -3.7443 13 7 3.5061 1.4435 0.0938 14 6 4.1084 0.7745 -1.0670 15 6 3.9537 0.8247 1.3488 16 6 3.7723 1.8165 2.4995 17 8 2.3797 2.0651 2.7013 18 6 4.4836 3.1302 2.1606 19 6 4.3656 4.0868 3.3502 20 8 4.9210 3.4709 4.5141 21 6 4.2636 2.2638 4.9053 22 6 4.3794 1.2332 3.7792 23 1 -0.3634 -1.0207 0.1196 24 1 -0.3632 0.6140 0.8242 25 1 -0.3633 0.4068 -0.9437 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 -0.8423 3.8804 -0.1807 29 1 3.8995 1.3517 -1.9677 30 1 5.1866 0.7005 -0.9249 31 1 3.6861 -0.2251 -1.1699 32 1 3.3625 -0.0701 1.5437 33 1 5.0062 0.5538 1.2651 34 1 2.1908 2.6870 3.4173 35 1 5.5359 2.9326 1.9567 36 1 4.0195 3.5797 1.2827 37 1 3.3150 4.3170 3.5271 38 1 4.9077 5.0069 3.1321 39 1 3.2117 2.4702 5.1025 40 1 4.7323 1.8706 5.8076 41 1 3.8409 0.3274 4.0578 42 1 5.4292 0.9951 3.6086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161617032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:20 Heat of formation + Delta-G solvation = -110.715589 kcal Electronic energy + Delta-G solvation = -21514.417369 eV Core-core repulsion = 18493.827363 eV Total energy + Delta-G solvation = -3020.590006 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08279 -38.89870 -36.92332 -34.74559 -33.19842 -32.52504 -31.98635 -29.04567 -28.12986 -26.08557 -24.65304 -24.21617 -23.20539 -20.96928 -20.27660 -18.48304 -17.98297 -16.94947 -16.66792 -16.60149 -16.09391 -15.71522 -15.60683 -15.33700 -15.19167 -14.63294 -14.41332 -13.99194 -13.44521 -13.25168 -13.00557 -12.95009 -12.73949 -12.57864 -12.48092 -12.41949 -12.37664 -12.19365 -12.10326 -11.90552 -11.57928 -11.17707 -11.08154 -10.89141 -10.52848 -10.36393 -10.09706 -8.60943 -7.99966 -5.98992 1.41452 1.43970 1.49596 2.49104 2.96652 3.20706 3.45069 3.53677 3.92178 3.95278 4.05487 4.14670 4.31281 4.39448 4.47008 4.51308 4.65533 4.70112 4.75953 4.78736 4.82458 4.85563 4.89031 4.93081 4.97696 5.13842 5.19935 5.24550 5.31942 5.39345 5.49282 5.59049 5.68666 5.85243 6.04616 6.27118 6.30958 6.83101 6.94144 7.02235 7.21129 7.61424 9.07124 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.024753 B = 0.007068 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.895092 B = 3960.418769 C = 4239.116647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.136 4.136 3 C 0.195 3.805 4 H 0.090 0.910 5 C -0.517 4.517 6 H 0.042 0.958 7 C 0.036 3.964 8 N -0.899 5.899 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.278 1.278 13 N -0.538 5.538 14 C 0.034 3.966 15 C 0.059 3.941 16 C 0.139 3.861 17 O -0.554 6.554 18 C -0.156 4.156 19 C 0.060 3.940 20 O -0.396 6.396 21 C 0.057 3.943 22 C -0.172 4.172 23 H 0.044 0.956 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.036 0.964 28 H 0.256 0.744 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.013 0.987 32 H 0.030 0.970 33 H 0.086 0.914 34 H 0.364 0.636 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.083 0.917 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.382 -3.474 8.579 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C 0.089 3.911 4 H 0.108 0.892 5 C -0.555 4.555 6 H 0.060 0.940 7 C -0.164 4.164 8 N -0.538 5.538 9 Si 0.753 3.247 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.260 5.260 14 C -0.114 4.114 15 C -0.069 4.069 16 C 0.098 3.902 17 O -0.361 6.361 18 C -0.195 4.195 19 C -0.017 4.017 20 O -0.315 6.315 21 C -0.019 4.019 22 C -0.211 4.211 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.049 0.951 33 H 0.104 0.896 34 H 0.213 0.787 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.135 0.865 41 H 0.101 0.899 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.508 -3.208 8.247 12.276 hybrid contribution -1.171 -0.233 -0.944 1.522 sum 7.337 -3.441 7.303 10.909 Atomic orbital electron populations 1.21291 0.96468 0.98446 1.00591 1.22106 0.96374 1.01479 0.97553 1.19745 0.82257 0.90538 0.98595 0.89196 1.21265 1.08966 1.29402 0.95878 0.93969 1.25383 0.98127 0.95074 0.97852 1.70109 1.21921 1.35102 1.26642 0.86139 0.78244 0.77981 0.82371 1.20199 1.21210 1.20327 1.62457 1.10861 1.52277 1.00446 1.22232 0.98116 0.96073 0.94991 1.22205 0.99675 0.94736 0.90300 1.21237 0.81144 0.94223 0.93603 1.86845 1.23991 1.67454 1.57767 1.22498 1.01175 0.96785 0.98996 1.22641 0.98553 0.96083 0.84408 1.87891 1.58809 1.39409 1.45360 1.22713 0.97775 0.84108 0.97353 1.22782 1.02722 1.00013 0.95559 0.93728 0.94772 0.94724 0.94804 0.94513 0.93470 0.93085 0.91475 0.96813 0.95149 0.89596 0.78724 0.90834 0.91448 0.93317 0.87807 0.92740 0.86508 0.89856 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.02 9.36 71.98 0.67 -4.34 16 2 C -0.14 -6.15 4.77 30.60 0.15 -6.00 16 3 C 0.20 9.57 1.91 44.17 0.08 9.65 16 4 H 0.09 4.91 4.47 -2.39 -0.01 4.90 16 5 C -0.52 -28.16 7.36 25.60 0.19 -27.97 16 6 H 0.04 2.33 6.13 -2.91 -0.02 2.31 16 7 C 0.04 2.00 4.41 84.65 0.37 2.37 16 8 N -0.90 -51.25 12.80 21.45 0.27 -50.98 16 9 Si 0.93 43.90 29.57 68.60 2.03 45.93 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 N -0.54 -22.73 3.75 -901.49 -3.38 -26.10 16 14 C 0.03 1.31 8.95 127.69 1.14 2.46 16 15 C 0.06 2.07 4.23 86.30 0.37 2.44 16 16 C 0.14 4.43 0.88 -10.68 -0.01 4.42 16 17 O -0.55 -20.83 10.16 -148.98 -1.51 -22.35 16 18 C -0.16 -4.99 4.87 30.69 0.15 -4.84 16 19 C 0.06 1.63 6.59 72.02 0.47 2.11 16 20 O -0.40 -10.39 10.77 -148.98 -1.60 -12.00 16 21 C 0.06 1.24 6.59 72.01 0.47 1.71 16 22 C -0.17 -4.15 5.15 30.68 0.16 -3.99 16 23 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.03 1.69 7.01 -2.39 -0.02 1.67 16 26 H 0.03 1.51 6.53 -2.39 -0.02 1.49 16 27 H 0.04 1.57 5.96 -2.39 -0.01 1.55 16 28 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.05 2.13 6.37 -2.39 -0.02 2.12 16 30 H 0.07 2.13 7.83 -2.39 -0.02 2.11 16 31 H 0.01 0.52 6.17 -2.39 -0.01 0.50 16 32 H 0.03 1.13 5.62 -2.38 -0.01 1.11 16 33 H 0.09 2.57 7.71 -2.39 -0.02 2.55 16 34 H 0.36 11.63 5.97 -74.06 -0.44 11.19 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 37 H 0.05 1.36 6.93 -2.39 -0.02 1.34 16 38 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.05 1.15 6.93 -2.39 -0.02 1.13 16 40 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -61.47 309.91 0.59 -60.88 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.57 Total: 26.61 kcal Atomic # 6 Polarization: -26.21 SS G_CDS: 4.22 Total: -21.99 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -3.10 Total: -77.08 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -3.12 Total: -34.34 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -61.47 0.59 -60.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161617032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.835 kcal (2) G-P(sol) polarization free energy of solvation -61.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds