Wall clock time and date at job start Mon Mar 30 2020 04:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 5 5 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 6 6 H 1.09003 * 109.50950 * 300.08674 * 5 2 1 7 7 C 1.53099 * 109.50774 * 179.97438 * 5 2 1 8 8 N 1.47016 * 109.26152 * 183.21599 * 7 5 2 9 9 C 1.46902 * 110.99892 * 182.39500 * 8 7 5 10 10 C 1.50699 * 109.46606 * 170.00099 * 9 8 7 11 11 O 1.21300 * 120.00473 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99913 * 179.97438 * 10 9 8 13 13 C 1.37100 * 120.00339 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99723 * 359.97438 * 13 12 10 15 15 C 1.38948 * 120.00126 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99825 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99888 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47286 * 59.99602 * 17 15 13 19 19 H 1.48501 * 109.47352 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47105 * 299.99747 * 17 15 13 21 21 C 1.47014 * 110.75011 * 58.61990 * 8 7 5 22 22 C 1.53098 * 109.25662 * 301.38503 * 21 8 7 23 23 O 1.43016 * 109.26231 * 56.85060 * 22 21 8 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.00893 * 111.00096 * 176.05209 * 4 2 1 28 28 H 1.00903 * 110.99833 * 299.99831 * 4 2 1 29 29 H 1.09002 * 109.51067 * 303.15742 * 7 5 2 30 30 H 1.09008 * 109.50236 * 63.28130 * 7 5 2 31 31 H 1.08998 * 109.46991 * 289.99923 * 9 8 7 32 32 H 1.08999 * 109.47021 * 50.00645 * 9 8 7 33 33 H 0.97001 * 119.99734 * 0.02562 * 12 10 9 34 34 H 0.97000 * 119.99461 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.50819 * 61.31691 * 21 8 7 36 36 H 1.09001 * 109.50754 * 181.44977 * 21 8 7 37 37 H 1.09003 * 109.50802 * 176.78698 * 22 21 8 38 38 H 1.09004 * 109.50671 * 296.86683 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0399 -0.7212 1.2493 6 1 1.6756 -0.2087 2.1397 7 6 3.5709 -0.7223 1.2499 8 7 4.0549 -1.4827 2.4113 9 6 5.5221 -1.4604 2.4808 10 6 5.9710 -2.0318 3.8011 11 8 5.1496 -2.4199 4.6048 12 7 7.2853 -2.1125 4.0884 13 6 7.6939 -2.6328 5.2893 14 1 6.9624 -2.9776 6.0052 15 6 9.0488 -2.7155 5.5857 16 7 9.9388 -2.2955 4.7147 17 14 9.6054 -3.4238 7.2221 18 1 9.1251 -4.8236 7.3447 19 1 11.0886 -3.4018 7.2923 20 1 9.0449 -2.6094 8.3302 21 6 3.5500 -2.8630 2.3773 22 6 2.0192 -2.8405 2.3654 23 8 1.5673 -2.0711 1.2477 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.0262 -0.6501 -1.2558 28 1 1.6963 -1.6480 -1.2227 29 1 3.9350 -1.1867 0.3334 30 1 3.9356 0.3033 1.3086 31 1 5.9335 -2.0581 1.6675 32 1 5.8745 -0.4329 2.3910 33 1 7.9423 -1.8025 3.4455 34 1 10.8847 -2.3537 4.9215 35 1 3.9136 -3.3616 1.4788 36 1 3.8992 -3.4001 3.2591 37 1 1.6408 -3.8594 2.2827 38 1 1.6546 -2.3908 3.2890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169168041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:42 Heat of formation + Delta-G solvation = -76.392463 kcal Electronic energy + Delta-G solvation = -19801.458379 eV Core-core repulsion = 16678.816392 eV Total energy + Delta-G solvation = -3122.641987 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94322 -38.19699 -35.91297 -35.11422 -33.85577 -31.30278 -30.32662 -29.09272 -28.86752 -25.67926 -24.08861 -23.78810 -21.15579 -20.06775 -19.23533 -17.90930 -16.72888 -16.26850 -15.98715 -15.58906 -15.21657 -14.93739 -14.72336 -14.25297 -14.06826 -13.82629 -13.66301 -13.33839 -12.96585 -12.32616 -12.07558 -11.79645 -11.65587 -11.47853 -11.44344 -11.19130 -11.17913 -10.92970 -10.51786 -10.46935 -10.25363 -9.64224 -9.50097 -8.85040 -8.47142 -8.03963 -7.94640 -6.45550 -3.86700 3.17150 3.23351 3.27375 3.67380 3.81010 3.86090 4.18517 4.51592 4.71680 4.86337 4.95607 5.10333 5.17917 5.19518 5.22353 5.33398 5.40359 5.54293 5.62075 5.72946 5.76090 5.79885 5.83994 5.91429 6.09180 6.14480 6.20899 6.27328 6.98131 7.12137 7.14045 7.27814 7.35042 7.51224 8.01605 8.57037 9.13653 9.49506 10.00971 10.72035 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.052385 B = 0.004026 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.379301 B = 6952.668611 C = 7250.803307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.098 3.902 3 H 0.091 0.909 4 N -0.841 5.841 5 C 0.059 3.941 6 H 0.069 0.931 7 C 0.022 3.978 8 N -0.511 5.511 9 C 0.046 3.954 10 C 0.443 3.557 11 O -0.579 6.579 12 N -0.562 5.562 13 C -0.301 4.301 14 H 0.103 0.897 15 C 0.023 3.977 16 N -0.901 5.901 17 Si 0.931 3.069 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.016 3.984 22 C 0.069 3.931 23 O -0.384 6.384 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.338 0.662 28 H 0.347 0.653 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.392 0.608 34 H 0.272 0.728 35 H 0.030 0.970 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.116 3.127 -9.726 15.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.015 4.015 3 H 0.109 0.891 4 N -0.370 5.370 5 C -0.001 4.001 6 H 0.087 0.913 7 C -0.107 4.107 8 N -0.236 5.236 9 C -0.085 4.085 10 C 0.228 3.772 11 O -0.464 6.464 12 N -0.198 5.198 13 C -0.430 4.430 14 H 0.121 0.879 15 C -0.179 4.179 16 N -0.543 5.543 17 Si 0.758 3.242 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.112 4.112 22 C -0.008 4.008 23 O -0.303 6.303 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.160 0.840 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.225 0.775 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.165 3.562 -9.300 16.508 hybrid contribution 1.993 -1.045 0.632 2.337 sum -11.173 2.518 -8.668 14.363 Atomic orbital electron populations 1.21701 0.93826 1.02667 1.01557 1.21502 0.96395 0.97280 0.86289 0.89132 1.58989 1.16057 1.22259 1.39741 1.23030 0.92402 0.84457 1.00256 0.91314 1.22819 0.96033 0.99587 0.92261 1.61788 1.08843 1.13741 1.39231 1.21874 0.87611 1.01777 0.97264 1.19690 0.83352 0.85407 0.88743 1.90477 1.52297 1.53310 1.50280 1.41859 1.05063 1.55025 1.17892 1.19654 0.91801 1.37313 0.94270 0.87938 1.25269 0.95547 0.97591 0.99456 1.69605 1.02044 1.47012 1.35593 0.85909 0.77244 0.79512 0.81508 1.19896 1.20945 1.19848 1.22952 0.95602 0.89891 1.02774 1.22654 0.93236 0.95714 0.89198 1.87851 1.73024 1.22590 1.46878 0.92389 0.92110 0.91920 0.84863 0.83985 0.94601 0.89898 0.93424 0.89273 0.77479 0.91765 0.95198 0.86863 0.88706 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.34 37.16 0.35 -0.97 16 2 C 0.10 0.98 3.30 -67.71 -0.22 0.75 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 N -0.84 -8.36 9.11 -4.67 -0.04 -8.41 16 5 C 0.06 0.71 2.62 -26.68 -0.07 0.64 16 6 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 7 C 0.02 0.28 4.67 -3.71 -0.02 0.27 16 8 N -0.51 -8.54 4.46 -235.74 -1.05 -9.59 16 9 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 10 C 0.44 10.35 7.49 -10.99 -0.08 10.27 16 11 O -0.58 -15.36 13.92 5.54 0.08 -15.28 16 12 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 13 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 14 H 0.10 2.96 7.16 -52.48 -0.38 2.59 16 15 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 16 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 17 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 C 0.02 0.26 5.29 -3.71 -0.02 0.24 16 22 C 0.07 0.95 7.01 37.21 0.26 1.21 16 23 O -0.38 -5.05 9.21 -35.23 -0.32 -5.38 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.65 7.69 -51.93 -0.40 0.25 16 27 H 0.34 3.19 7.33 -39.30 -0.29 2.90 16 28 H 0.35 3.60 8.44 -39.29 -0.33 3.27 16 29 H 0.04 0.44 6.61 -51.93 -0.34 0.10 16 30 H 0.08 0.99 8.09 -51.92 -0.42 0.57 16 31 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 32 H 0.09 1.44 8.04 -51.93 -0.42 1.02 16 33 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.11 2.21 5.88 -51.93 -0.31 1.91 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 306.82 15.07 4.62 4.62 Total: -1.00 -30.06 306.82 -6.87 -36.92 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -5.72 Total: 13.81 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.07 Total: 5.26 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.43 Total: -55.83 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.25 Total: -20.66 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.06 -6.87 -36.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169168041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.472 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds