Wall clock time and date at job start Mon Mar 30 2020 04:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 5 5 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 6 6 H 1.09003 * 109.50950 * 300.08674 * 5 2 1 7 7 C 1.53099 * 109.50774 * 179.97438 * 5 2 1 8 8 N 1.47016 * 109.26152 * 183.21599 * 7 5 2 9 9 C 1.46902 * 110.99892 * 182.39500 * 8 7 5 10 10 C 1.50699 * 109.46606 * 170.00099 * 9 8 7 11 11 O 1.21300 * 120.00473 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99913 * 179.97438 * 10 9 8 13 13 C 1.37100 * 120.00339 * 180.02562 * 12 10 9 14 14 H 1.08004 * 119.99723 * 359.97438 * 13 12 10 15 15 C 1.38948 * 120.00126 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99825 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99888 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47286 * 59.99602 * 17 15 13 19 19 H 1.48501 * 109.47352 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47105 * 299.99747 * 17 15 13 21 21 C 1.47014 * 110.75011 * 58.61990 * 8 7 5 22 22 C 1.53098 * 109.25662 * 301.38503 * 21 8 7 23 23 O 1.43016 * 109.26231 * 56.85060 * 22 21 8 24 24 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 26 26 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 27 27 H 1.00893 * 111.00096 * 176.05209 * 4 2 1 28 28 H 1.00903 * 110.99833 * 299.99831 * 4 2 1 29 29 H 1.09002 * 109.51067 * 303.15742 * 7 5 2 30 30 H 1.09008 * 109.50236 * 63.28130 * 7 5 2 31 31 H 1.08998 * 109.46991 * 289.99923 * 9 8 7 32 32 H 1.08999 * 109.47021 * 50.00645 * 9 8 7 33 33 H 0.97001 * 119.99734 * 0.02562 * 12 10 9 34 34 H 0.97000 * 119.99461 * 180.02562 * 16 15 13 35 35 H 1.09001 * 109.50819 * 61.31691 * 21 8 7 36 36 H 1.09001 * 109.50754 * 181.44977 * 21 8 7 37 37 H 1.09003 * 109.50802 * 176.78698 * 22 21 8 38 38 H 1.09004 * 109.50671 * 296.86683 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0399 -0.7212 1.2493 6 1 1.6756 -0.2087 2.1397 7 6 3.5709 -0.7223 1.2499 8 7 4.0549 -1.4827 2.4113 9 6 5.5221 -1.4604 2.4808 10 6 5.9710 -2.0318 3.8011 11 8 5.1496 -2.4199 4.6048 12 7 7.2853 -2.1125 4.0884 13 6 7.6939 -2.6328 5.2893 14 1 6.9624 -2.9776 6.0052 15 6 9.0488 -2.7155 5.5857 16 7 9.9388 -2.2955 4.7147 17 14 9.6054 -3.4238 7.2221 18 1 9.1251 -4.8236 7.3447 19 1 11.0886 -3.4018 7.2923 20 1 9.0449 -2.6094 8.3302 21 6 3.5500 -2.8630 2.3773 22 6 2.0192 -2.8405 2.3654 23 8 1.5673 -2.0711 1.2477 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.0262 -0.6501 -1.2558 28 1 1.6963 -1.6480 -1.2227 29 1 3.9350 -1.1867 0.3334 30 1 3.9356 0.3033 1.3086 31 1 5.9335 -2.0581 1.6675 32 1 5.8745 -0.4329 2.3910 33 1 7.9423 -1.8025 3.4455 34 1 10.8847 -2.3537 4.9215 35 1 3.9136 -3.3616 1.4788 36 1 3.8992 -3.4001 3.2591 37 1 1.6408 -3.8594 2.2827 38 1 1.6546 -2.3908 3.2890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169168041.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:41 Heat of formation + Delta-G solvation = -101.333543 kcal Electronic energy + Delta-G solvation = -19802.539905 eV Core-core repulsion = 16678.816392 eV Total energy + Delta-G solvation = -3123.723513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13433 -39.90740 -37.05528 -36.26353 -35.78495 -33.31253 -31.39135 -30.26127 -29.87124 -27.32521 -25.53344 -25.00995 -22.23305 -21.12056 -20.98765 -19.89977 -17.99339 -17.51614 -17.29421 -16.62220 -16.52645 -16.43763 -16.06342 -15.84192 -15.47172 -15.23323 -14.95821 -14.54462 -14.09255 -13.95734 -13.50108 -13.11852 -12.97069 -12.83015 -12.59815 -12.47993 -12.45381 -12.23499 -12.13671 -12.00619 -11.61484 -11.46261 -10.80713 -10.25320 -10.02905 -9.63197 -9.32621 -8.48588 -5.97577 1.38239 1.40590 1.51362 2.01356 2.25504 2.57473 2.71523 3.17801 3.30447 3.63868 3.83537 3.92424 3.98111 4.09451 4.16041 4.29006 4.32770 4.42510 4.45240 4.50622 4.57048 4.64773 4.77733 4.89444 4.92261 5.04345 5.17843 5.38627 5.39818 5.75831 5.94495 6.03565 6.11860 6.27564 6.57607 6.57976 7.10281 7.53086 8.08541 8.68562 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.052385 B = 0.004026 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.379301 B = 6952.668611 C = 7250.803307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.104 3.896 3 H 0.105 0.895 4 N -0.840 5.840 5 C 0.059 3.941 6 H 0.060 0.940 7 C 0.024 3.976 8 N -0.531 5.531 9 C 0.058 3.942 10 C 0.440 3.560 11 O -0.614 6.614 12 N -0.572 5.572 13 C -0.335 4.335 14 H 0.079 0.921 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.993 3.007 18 H -0.272 1.272 19 H -0.270 1.270 20 H -0.272 1.272 21 C 0.019 3.981 22 C 0.076 3.924 23 O -0.383 6.383 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.342 0.658 28 H 0.345 0.655 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.396 0.604 34 H 0.278 0.722 35 H 0.036 0.964 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.306 3.743 -10.766 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.009 4.009 3 H 0.123 0.877 4 N -0.370 5.370 5 C -0.001 4.001 6 H 0.078 0.922 7 C -0.104 4.104 8 N -0.256 5.256 9 C -0.073 4.073 10 C 0.227 3.773 11 O -0.501 6.501 12 N -0.209 5.209 13 C -0.464 4.464 14 H 0.097 0.903 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.816 3.184 18 H -0.197 1.197 19 H -0.195 1.195 20 H -0.197 1.197 21 C -0.109 4.109 22 C -0.001 4.001 23 O -0.301 6.301 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.156 0.844 28 H 0.158 0.842 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.230 0.770 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.133 0.867 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.357 4.194 -10.373 17.424 hybrid contribution 1.994 -1.212 0.917 2.508 sum -11.363 2.981 -9.456 15.080 Atomic orbital electron populations 1.21676 0.93392 1.02176 1.02199 1.21537 0.96711 0.97560 0.85093 0.87748 1.59004 1.16406 1.22138 1.39417 1.23162 0.91831 0.84003 1.01108 0.92231 1.22915 0.96518 0.99818 0.91166 1.61749 1.07964 1.14179 1.41694 1.21745 0.88769 1.02772 0.94015 1.20700 0.82395 0.83888 0.90268 1.90458 1.53088 1.54409 1.52121 1.41922 1.05925 1.55614 1.17477 1.19629 0.92141 1.39297 0.95337 0.90258 1.26036 0.95074 0.97388 1.02669 1.69666 1.02406 1.47135 1.36900 0.84993 0.77332 0.78661 0.77387 1.19679 1.19481 1.19707 1.22831 0.97246 0.89681 1.01180 1.22579 0.91475 0.96942 0.89082 1.87868 1.72874 1.23110 1.46290 0.91809 0.91432 0.92957 0.84416 0.84213 0.93371 0.88397 0.91624 0.87008 0.77040 0.91254 0.94546 0.90612 0.86698 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.34 71.98 0.67 -1.61 16 2 C 0.10 1.81 3.30 44.92 0.15 1.95 16 3 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 4 N -0.84 -14.57 9.11 -168.68 -1.54 -16.11 16 5 C 0.06 1.31 2.62 30.63 0.08 1.39 16 6 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 7 C 0.02 0.56 4.67 86.31 0.40 0.96 16 8 N -0.53 -17.15 4.46 -899.75 -4.01 -21.16 16 9 C 0.06 2.00 5.45 85.56 0.47 2.47 16 10 C 0.44 20.86 7.49 87.66 0.66 21.51 16 11 O -0.61 -33.58 13.92 -3.09 -0.04 -33.62 16 12 N -0.57 -29.24 5.29 -306.97 -1.62 -30.86 16 13 C -0.33 -18.92 9.68 84.04 0.81 -18.10 16 14 H 0.08 4.77 7.16 -2.91 -0.02 4.74 16 15 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 16 N -0.92 -49.45 13.05 21.66 0.28 -49.17 16 17 Si 0.99 42.70 29.55 68.60 2.03 44.73 16 18 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 C 0.02 0.61 5.29 86.31 0.46 1.06 16 22 C 0.08 2.05 7.01 72.01 0.50 2.56 16 23 O -0.38 -9.42 9.21 -148.98 -1.37 -10.79 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.05 0.98 7.69 -2.39 -0.02 0.97 16 27 H 0.34 5.48 7.33 -89.70 -0.66 4.82 16 28 H 0.34 6.38 8.44 -89.69 -0.76 5.62 16 29 H 0.05 1.04 6.61 -2.39 -0.02 1.03 16 30 H 0.10 2.04 8.09 -2.38 -0.02 2.02 16 31 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 32 H 0.11 3.37 8.04 -2.39 -0.02 3.35 16 33 H 0.40 19.22 7.90 -92.71 -0.73 18.48 16 34 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 3.05 5.88 -2.39 -0.01 3.04 16 37 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -64.82 306.82 -2.67 -67.49 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -1.06 Total: 37.46 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 4.67 Total: 12.03 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -6.89 Total: -117.30 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.42 Total: -44.41 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -64.82 -2.67 -67.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169168041.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.845 kcal (2) G-P(sol) polarization free energy of solvation -64.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds