Wall clock time and date at job start Mon Mar 30 2020 04:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99877 * 2 1 4 4 H 1.48504 * 109.47331 * 270.00046 * 3 2 1 5 5 H 1.48505 * 109.47068 * 29.99864 * 3 2 1 6 6 H 1.48497 * 109.47658 * 149.99869 * 3 2 1 7 7 C 1.37875 * 120.00604 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99910 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00508 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47351 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47286 * 179.97438 * 10 9 7 12 12 C 1.46898 * 111.00203 * 174.80091 * 11 10 9 13 13 H 1.09007 * 109.47081 * 326.13042 * 12 11 10 14 14 C 1.53002 * 109.47229 * 86.13334 * 12 11 10 15 15 C 1.52994 * 109.47416 * 185.61320 * 14 12 11 16 16 O 1.42897 * 109.47474 * 182.31257 * 15 14 12 17 17 C 1.53000 * 109.47168 * 206.13222 * 12 11 10 18 18 C 1.53179 * 109.54465 * 65.00297 * 17 12 11 19 19 C 1.53089 * 109.16451 * 183.06273 * 18 17 12 20 20 O 1.42901 * 109.41471 * 57.60520 * 19 18 17 21 21 C 1.42903 * 114.09869 * 298.84561 * 20 19 18 22 22 C 1.53082 * 109.41770 * 61.15617 * 21 20 19 23 23 H 0.96996 * 120.00210 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46920 * 59.99728 * 9 7 2 25 25 H 1.08992 * 109.46850 * 300.00351 * 9 7 2 26 26 H 1.09007 * 109.47049 * 60.00153 * 10 9 7 27 27 H 1.09001 * 109.47722 * 300.00402 * 10 9 7 28 28 H 1.00900 * 111.00444 * 298.75804 * 11 10 9 29 29 H 1.09006 * 109.46620 * 305.60929 * 14 12 11 30 30 H 1.08998 * 109.47049 * 65.61127 * 14 12 11 31 31 H 1.08999 * 109.46870 * 302.31253 * 15 14 12 32 32 H 1.09004 * 109.47498 * 62.30822 * 15 14 12 33 33 H 0.96699 * 114.00251 * 180.02562 * 16 15 14 34 34 H 1.09008 * 109.54182 * 185.17622 * 17 12 11 35 35 H 1.08999 * 109.52287 * 63.15601 * 18 17 12 36 36 H 1.08999 * 109.56945 * 302.99844 * 18 17 12 37 37 H 1.08999 * 109.47859 * 297.62557 * 19 18 17 38 38 H 1.08998 * 109.49014 * 177.59398 * 19 18 17 39 39 H 1.09002 * 109.47969 * 181.14288 * 21 20 19 40 40 H 1.09006 * 109.47845 * 301.17024 * 21 20 19 41 41 H 1.09001 * 109.52502 * 182.48618 * 22 21 20 42 42 H 1.09003 * 109.57612 * 62.32660 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 7 5.4907 -2.6363 0.0022 12 6 6.0172 -4.0019 0.1276 13 1 5.3508 -4.5919 0.7570 14 6 6.1091 -4.6424 -1.2589 15 6 6.5236 -6.1083 -1.1171 16 8 6.6618 -6.6919 -2.4141 17 6 7.4090 -3.9557 0.7613 18 6 7.3015 -3.4305 2.1963 19 6 8.7055 -3.3155 2.7958 20 8 9.5018 -2.4549 1.9788 21 6 9.6763 -2.9197 0.6388 22 6 8.3115 -3.0188 -0.0474 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1508 -0.8876 27 1 3.6580 -3.1497 0.8924 28 1 5.8523 -2.1838 -0.8239 29 1 5.1379 -4.5854 -1.7505 30 1 6.8504 -4.1113 -1.8560 31 1 7.4752 -6.1673 -0.5889 32 1 5.7619 -6.6486 -0.5549 33 1 6.9231 -7.6228 -2.4008 34 1 7.8387 -4.9575 0.7709 35 1 6.7060 -4.1212 2.7933 36 1 6.8260 -2.4498 2.1914 37 1 9.1645 -4.3032 2.8385 38 1 8.6384 -2.9018 3.8020 39 1 10.3086 -2.2208 0.0911 40 1 10.1481 -3.9022 0.6534 41 1 8.4382 -3.4150 -1.0549 42 1 7.8562 -2.0298 -0.0994 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309547594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:45 Heat of formation + Delta-G solvation = -118.886736 kcal Electronic energy + Delta-G solvation = -20076.697392 eV Core-core repulsion = 17055.753059 eV Total energy + Delta-G solvation = -3020.944333 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80146 -37.72289 -36.43688 -34.04787 -32.44611 -31.37393 -30.95068 -29.20048 -26.07828 -24.10095 -23.54057 -22.98652 -21.21979 -20.36355 -19.32421 -17.57885 -16.77276 -16.42343 -15.98154 -15.33072 -15.02082 -14.89085 -14.52905 -14.43931 -14.05559 -13.81470 -13.25711 -12.97416 -12.65193 -12.47782 -12.38636 -11.90632 -11.62458 -11.37124 -11.20903 -11.17723 -10.99713 -10.94459 -10.36877 -10.25574 -10.09682 -9.96283 -9.88827 -9.70248 -9.42277 -9.21426 -8.52319 -7.93830 -6.03244 -4.01582 3.33706 3.41239 3.47639 3.87154 4.03719 4.47852 4.52737 4.63638 4.73622 4.96766 4.97902 5.03880 5.11787 5.17932 5.27163 5.31614 5.40828 5.45554 5.50908 5.54560 5.66569 5.69734 5.79788 5.92929 6.00380 6.09233 6.18373 6.20513 6.29549 6.38149 6.57691 6.78534 7.13958 7.18625 7.39061 7.43590 7.61225 7.75389 7.90018 8.54146 9.00785 9.59417 11.10144 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.005350 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.724985 B = 5232.696030 C = 6329.231835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.008 4.008 10 C 0.073 3.927 11 N -0.680 5.680 12 C 0.096 3.904 13 H 0.077 0.923 14 C -0.152 4.152 15 C 0.078 3.922 16 O -0.576 6.576 17 C -0.076 4.076 18 C -0.146 4.146 19 C 0.061 3.939 20 O -0.384 6.384 21 C 0.063 3.937 22 C -0.153 4.153 23 H 0.263 0.737 24 H 0.025 0.975 25 H 0.008 0.992 26 H 0.022 0.978 27 H 0.063 0.937 28 H 0.336 0.664 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.376 0.624 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.299 -11.711 1.168 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.088 0.912 9 C -0.046 4.046 10 C -0.055 4.055 11 N -0.310 5.310 12 C -0.015 4.015 13 H 0.096 0.904 14 C -0.192 4.192 15 C 0.000 4.000 16 O -0.381 6.381 17 C -0.095 4.095 18 C -0.184 4.184 19 C -0.015 4.015 20 O -0.303 6.303 21 C -0.014 4.014 22 C -0.191 4.191 23 H 0.073 0.927 24 H 0.043 0.957 25 H 0.027 0.973 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.154 0.846 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.222 0.778 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.060 0.940 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 19.077 -10.664 1.745 21.925 hybrid contribution 0.049 -0.375 -0.886 0.964 sum 19.126 -11.039 0.859 22.100 Atomic orbital electron populations 1.69912 1.06346 1.26914 1.51195 1.24999 0.94709 0.99205 0.94465 0.86756 0.80522 0.83441 0.78461 1.20423 1.21463 1.18712 1.21077 0.89463 0.94456 1.50982 0.91206 1.19519 0.96500 0.91869 0.96714 1.21999 0.84079 1.00026 0.99394 1.60728 1.09804 1.15016 1.45454 1.21496 0.95644 0.90530 0.93862 0.90443 1.22364 1.02861 0.94403 0.99530 1.22245 0.99219 0.94372 0.84168 1.86509 1.92485 1.29592 1.29515 1.21227 0.94964 0.97990 0.95282 1.22165 0.96854 1.04046 0.95302 1.22594 0.90832 0.93668 0.94449 1.87924 1.71263 1.48967 1.22124 1.22539 0.96495 0.99059 0.83280 1.22259 0.95877 1.02054 0.98872 0.92745 0.95683 0.97346 0.96003 0.91833 0.84583 0.91004 0.90888 0.93540 0.93776 0.77784 0.91767 0.91555 0.88959 0.94009 0.89207 0.89306 0.93921 0.91382 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.20 4.34 -27.88 -0.12 -0.32 16 10 C 0.07 1.43 5.45 -3.83 -0.02 1.41 16 11 N -0.68 -10.71 4.95 -106.73 -0.53 -11.24 16 12 C 0.10 1.21 1.76 -67.71 -0.12 1.09 16 13 H 0.08 1.03 7.70 -51.93 -0.40 0.63 16 14 C -0.15 -1.87 4.92 -26.73 -0.13 -2.00 16 15 C 0.08 0.80 6.87 37.15 0.26 1.06 16 16 O -0.58 -6.29 13.66 -35.23 -0.48 -6.77 16 17 C -0.08 -0.83 1.97 -90.44 -0.18 -1.01 16 18 C -0.15 -1.71 5.34 -26.59 -0.14 -1.85 16 19 C 0.06 0.66 6.84 37.20 0.25 0.91 16 20 O -0.38 -4.88 10.77 -35.23 -0.38 -5.26 16 21 C 0.06 0.66 6.84 37.20 0.25 0.91 16 22 C -0.15 -1.67 4.82 -26.60 -0.13 -1.79 16 23 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.02 0.62 7.20 -51.92 -0.37 0.24 16 25 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 26 H 0.02 0.44 7.54 -51.92 -0.39 0.04 16 27 H 0.06 1.27 7.92 -51.93 -0.41 0.86 16 28 H 0.34 5.15 7.74 -39.29 -0.30 4.85 16 29 H 0.07 1.03 7.51 -51.93 -0.39 0.64 16 30 H 0.07 0.89 6.42 -51.93 -0.33 0.56 16 31 H 0.05 0.41 6.38 -51.93 -0.33 0.08 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.38 2.26 9.12 45.56 0.42 2.68 16 34 H 0.06 0.62 6.32 -51.92 -0.33 0.29 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.09 1.34 7.69 -51.93 -0.40 0.94 16 37 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.68 6.63 -51.93 -0.34 0.34 16 42 H 0.09 1.10 7.01 -51.93 -0.36 0.73 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -32.43 323.73 -7.38 -39.81 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.47 Total: 3.57 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -0.51 Total: -15.00 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.25 Total: -38.66 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.86 Total: -12.04 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.43 -7.38 -39.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309547594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.075 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds