Wall clock time and date at job start Mon Mar 30 2020 04:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99877 * 2 1 4 4 H 1.48504 * 109.47331 * 270.00046 * 3 2 1 5 5 H 1.48505 * 109.47068 * 29.99864 * 3 2 1 6 6 H 1.48497 * 109.47658 * 149.99869 * 3 2 1 7 7 C 1.37875 * 120.00604 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99910 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00508 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47351 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47286 * 179.97438 * 10 9 7 12 12 C 1.46898 * 111.00203 * 174.80091 * 11 10 9 13 13 H 1.09007 * 109.47081 * 326.13042 * 12 11 10 14 14 C 1.53002 * 109.47229 * 86.13334 * 12 11 10 15 15 C 1.52994 * 109.47416 * 185.61320 * 14 12 11 16 16 O 1.42897 * 109.47474 * 182.31257 * 15 14 12 17 17 C 1.53000 * 109.47168 * 206.13222 * 12 11 10 18 18 C 1.53179 * 109.54465 * 65.00297 * 17 12 11 19 19 C 1.53089 * 109.16451 * 183.06273 * 18 17 12 20 20 O 1.42901 * 109.41471 * 57.60520 * 19 18 17 21 21 C 1.42903 * 114.09869 * 298.84561 * 20 19 18 22 22 C 1.53082 * 109.41770 * 61.15617 * 21 20 19 23 23 H 0.96996 * 120.00210 * 0.02562 * 1 2 3 24 24 H 1.09007 * 109.46920 * 59.99728 * 9 7 2 25 25 H 1.08992 * 109.46850 * 300.00351 * 9 7 2 26 26 H 1.09007 * 109.47049 * 60.00153 * 10 9 7 27 27 H 1.09001 * 109.47722 * 300.00402 * 10 9 7 28 28 H 1.00900 * 111.00444 * 298.75804 * 11 10 9 29 29 H 1.09006 * 109.46620 * 305.60929 * 14 12 11 30 30 H 1.08998 * 109.47049 * 65.61127 * 14 12 11 31 31 H 1.08999 * 109.46870 * 302.31253 * 15 14 12 32 32 H 1.09004 * 109.47498 * 62.30822 * 15 14 12 33 33 H 0.96699 * 114.00251 * 180.02562 * 16 15 14 34 34 H 1.09008 * 109.54182 * 185.17622 * 17 12 11 35 35 H 1.08999 * 109.52287 * 63.15601 * 18 17 12 36 36 H 1.08999 * 109.56945 * 302.99844 * 18 17 12 37 37 H 1.08999 * 109.47859 * 297.62557 * 19 18 17 38 38 H 1.08998 * 109.49014 * 177.59398 * 19 18 17 39 39 H 1.09002 * 109.47969 * 181.14288 * 21 20 19 40 40 H 1.09006 * 109.47845 * 301.17024 * 21 20 19 41 41 H 1.09001 * 109.52502 * 182.48618 * 22 21 20 42 42 H 1.09003 * 109.57612 * 62.32660 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6363 0.0023 11 7 5.4907 -2.6363 0.0022 12 6 6.0172 -4.0019 0.1276 13 1 5.3508 -4.5919 0.7570 14 6 6.1091 -4.6424 -1.2589 15 6 6.5236 -6.1083 -1.1171 16 8 6.6618 -6.6919 -2.4141 17 6 7.4090 -3.9557 0.7613 18 6 7.3015 -3.4305 2.1963 19 6 8.7055 -3.3155 2.7958 20 8 9.5018 -2.4549 1.9788 21 6 9.6763 -2.9197 0.6388 22 6 8.3115 -3.0188 -0.0474 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6798 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 3.6587 -3.1508 -0.8876 27 1 3.6580 -3.1497 0.8924 28 1 5.8523 -2.1838 -0.8239 29 1 5.1379 -4.5854 -1.7505 30 1 6.8504 -4.1113 -1.8560 31 1 7.4752 -6.1673 -0.5889 32 1 5.7619 -6.6486 -0.5549 33 1 6.9231 -7.6228 -2.4008 34 1 7.8387 -4.9575 0.7709 35 1 6.7060 -4.1212 2.7933 36 1 6.8260 -2.4498 2.1914 37 1 9.1645 -4.3032 2.8385 38 1 8.6384 -2.9018 3.8020 39 1 10.3086 -2.2208 0.0911 40 1 10.1481 -3.9022 0.6534 41 1 8.4382 -3.4150 -1.0549 42 1 7.8562 -2.0298 -0.0994 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309547594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:44 Heat of formation + Delta-G solvation = -144.126854 kcal Electronic energy + Delta-G solvation = -20077.791886 eV Core-core repulsion = 17055.753059 eV Total energy + Delta-G solvation = -3022.038827 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73014 -38.68071 -37.42200 -35.68433 -34.21526 -32.48591 -31.85698 -30.80802 -27.27070 -25.57885 -24.48761 -24.02560 -22.32542 -22.02687 -20.30302 -18.97067 -18.37330 -17.33218 -16.85021 -16.40823 -16.26219 -16.18962 -15.87908 -15.52090 -15.29865 -14.79187 -14.69584 -14.42192 -14.17378 -13.72370 -13.53790 -13.18787 -12.91159 -12.81768 -12.42260 -12.15785 -12.10134 -12.04578 -11.93784 -11.79173 -11.45243 -11.39793 -11.19707 -11.09384 -10.78898 -10.75715 -10.34189 -9.25852 -8.31262 -6.35521 1.35127 1.37623 1.50835 2.35513 3.04652 3.08192 3.18249 3.39387 3.71177 3.87199 4.06019 4.11324 4.20516 4.28675 4.34942 4.40652 4.43427 4.51549 4.59218 4.62483 4.67465 4.70981 4.85320 4.86911 4.90127 4.97550 5.04102 5.12884 5.18426 5.28391 5.33287 5.41271 5.49588 5.61457 5.66407 6.16662 6.25345 6.38595 6.52532 6.73285 6.89928 7.29620 8.85544 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.005350 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.724985 B = 5232.696030 C = 6329.231835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.533 4.533 8 H 0.031 0.969 9 C -0.002 4.002 10 C 0.090 3.910 11 N -0.678 5.678 12 C 0.099 3.901 13 H 0.072 0.928 14 C -0.148 4.148 15 C 0.081 3.919 16 O -0.598 6.598 17 C -0.069 4.069 18 C -0.145 4.145 19 C 0.061 3.939 20 O -0.408 6.408 21 C 0.061 3.939 22 C -0.150 4.150 23 H 0.267 0.733 24 H 0.021 0.979 25 H 0.015 0.985 26 H 0.013 0.987 27 H 0.055 0.945 28 H 0.340 0.660 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.397 0.603 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.089 -12.168 1.216 25.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.572 4.572 8 H 0.050 0.950 9 C -0.040 4.040 10 C -0.040 4.040 11 N -0.308 5.308 12 C -0.011 4.011 13 H 0.091 0.909 14 C -0.187 4.187 15 C 0.003 3.997 16 O -0.406 6.406 17 C -0.087 4.087 18 C -0.183 4.183 19 C -0.015 4.015 20 O -0.328 6.328 21 C -0.016 4.016 22 C -0.187 4.187 23 H 0.076 0.924 24 H 0.040 0.960 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.247 0.753 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.893 -11.158 1.789 24.637 hybrid contribution -0.858 -0.336 -0.913 1.296 sum 21.035 -11.493 0.876 23.986 Atomic orbital electron populations 1.70059 1.08280 1.28211 1.52621 1.25972 0.95580 1.03460 0.93997 0.85624 0.79435 0.78207 0.79153 1.19185 1.20894 1.17271 1.21426 0.92042 0.93143 1.50575 0.95040 1.19401 0.93351 0.94684 0.96557 1.21618 0.86672 0.97025 0.98638 1.60638 1.07007 1.17427 1.45731 1.21525 0.96610 0.88586 0.94403 0.90940 1.22255 1.01501 0.96332 0.98620 1.22196 1.00479 0.92746 0.84259 1.86448 1.92726 1.31571 1.29866 1.21204 0.93606 0.99363 0.94566 1.22125 0.97590 1.02446 0.96124 1.22669 0.89954 0.94593 0.94311 1.87896 1.71522 1.50134 1.23229 1.22672 0.96196 1.00383 0.82329 1.22217 0.96134 1.00792 0.99604 0.92438 0.96029 0.96705 0.96893 0.92605 0.84136 0.93730 0.90663 0.91184 0.93357 0.75326 0.89233 0.90823 0.92171 0.91806 0.88813 0.88498 0.91914 0.90199 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 2 C 0.01 0.41 5.47 84.65 0.46 0.87 16 3 Si 0.95 45.59 27.47 68.60 1.88 47.47 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 7 C -0.53 -31.49 9.66 25.60 0.25 -31.24 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C 0.00 -0.10 4.34 29.85 0.13 0.03 16 10 C 0.09 3.56 5.45 86.30 0.47 4.03 16 11 N -0.68 -21.02 4.95 -491.57 -2.43 -23.45 16 12 C 0.10 2.38 1.76 44.92 0.08 2.46 16 13 H 0.07 1.84 7.70 -2.38 -0.02 1.82 16 14 C -0.15 -3.41 4.92 30.59 0.15 -3.26 16 15 C 0.08 1.46 6.87 71.98 0.49 1.96 16 16 O -0.60 -11.66 13.66 -148.98 -2.03 -13.70 16 17 C -0.07 -1.34 1.97 -10.68 -0.02 -1.36 16 18 C -0.15 -3.15 5.34 30.68 0.16 -2.98 16 19 C 0.06 1.17 6.84 72.01 0.49 1.66 16 20 O -0.41 -9.51 10.77 -148.98 -1.60 -11.11 16 21 C 0.06 1.09 6.84 72.01 0.49 1.58 16 22 C -0.15 -2.91 4.82 30.68 0.15 -2.77 16 23 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 24 H 0.02 1.05 7.20 -2.38 -0.02 1.03 16 25 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 26 H 0.01 0.53 7.54 -2.38 -0.02 0.51 16 27 H 0.06 2.28 7.92 -2.39 -0.02 2.26 16 28 H 0.34 10.18 7.74 -89.69 -0.69 9.49 16 29 H 0.04 1.27 7.51 -2.38 -0.02 1.25 16 30 H 0.07 1.69 6.42 -2.39 -0.02 1.68 16 31 H 0.07 0.94 6.38 -2.39 -0.02 0.92 16 32 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.40 3.72 9.12 -74.06 -0.68 3.05 16 34 H 0.09 1.36 6.32 -2.38 -0.02 1.34 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.71 7.69 -2.39 -0.02 1.69 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.08 1.37 6.63 -2.39 -0.02 1.35 16 42 H 0.06 1.54 7.01 -2.39 -0.02 1.52 16 Total: -1.00 -70.99 323.73 -1.00 -71.98 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.42 Total: 18.22 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.31 Total: -29.03 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -2.13 Total: -83.83 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -3.64 Total: -24.81 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Total: -70.99 -1.00 -71.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309547594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.143 kcal (2) G-P(sol) polarization free energy of solvation -70.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds