Wall clock time and date at job start Mon Mar 30 2020 04:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 119.99884 * 2 1 4 4 H 1.48500 * 109.46825 * 239.99566 * 3 2 1 5 5 H 1.48498 * 109.47307 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47115 * 120.00158 * 3 2 1 7 7 C 1.38952 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00075 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99883 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00326 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99870 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47308 * 180.02562 * 12 10 9 14 14 C 1.48026 * 111.00092 * 66.04298 * 13 12 10 15 15 C 1.50982 * 113.12744 * 84.00138 * 14 13 12 16 16 C 1.54714 * 109.07780 * 92.04412 * 15 14 13 17 17 O 1.36614 * 110.79105 * 286.64904 * 16 15 14 18 18 C 1.43448 * 117.83785 * 61.04331 * 17 16 15 19 19 H 1.08995 * 109.84360 * 37.49305 * 18 17 16 20 20 C 1.52998 * 109.84146 * 158.40089 * 18 17 16 21 21 N 1.46905 * 109.46978 * 299.99777 * 20 18 17 22 22 C 1.47394 * 111.00349 * 193.23267 * 13 12 10 23 23 H 0.96996 * 120.00246 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99896 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.47390 * 60.00141 * 12 10 9 26 26 H 1.09008 * 109.47462 * 299.99986 * 12 10 9 27 27 H 1.09002 * 108.75030 * 323.05890 * 14 13 12 28 28 H 1.08996 * 108.65576 * 204.87878 * 14 13 12 29 29 H 1.08995 * 109.54028 * 332.15862 * 15 14 13 30 30 H 1.08999 * 109.59799 * 211.96013 * 15 14 13 31 31 H 1.09004 * 109.21057 * 166.31359 * 16 15 14 32 32 H 1.08993 * 109.21078 * 46.99015 * 16 15 14 33 33 H 1.09002 * 109.47288 * 179.97438 * 20 18 17 34 34 H 1.08995 * 109.47151 * 59.99737 * 20 18 17 35 35 H 1.00901 * 110.99869 * 180.02562 * 21 20 18 36 36 H 1.00896 * 110.99543 * 303.95346 * 21 20 18 37 37 H 1.09003 * 109.06558 * 72.72510 * 22 13 12 38 38 H 1.08998 * 109.05808 * 313.80251 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1983 -5.9796 0.0007 14 6 2.9685 -6.0182 1.2642 15 6 2.2455 -6.7369 2.3778 16 6 2.6586 -8.2279 2.3693 17 8 2.0836 -8.8844 1.3182 18 6 2.4052 -8.4387 -0.0068 19 1 3.4535 -8.1443 -0.0538 20 6 2.1354 -9.5604 -1.0118 21 7 2.9638 -10.7267 -0.6778 22 6 1.5236 -7.2515 -0.3148 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3907 0.0005 25 1 0.6174 -4.9205 -0.8903 26 1 0.6167 -4.9210 0.8897 27 1 3.1725 -4.9955 1.5816 28 1 3.9168 -6.5227 1.0791 29 1 1.1693 -6.6560 2.2255 30 1 2.5127 -6.2901 3.3354 31 1 2.3390 -8.6939 3.3014 32 1 3.7430 -8.2991 2.2868 33 1 2.3812 -9.2153 -2.0161 34 1 1.0825 -9.8390 -0.9713 35 1 2.8040 -11.4817 -1.3278 36 1 3.9412 -10.4786 -0.6454 37 1 1.2659 -7.2647 -1.3738 38 1 0.6092 -7.3249 0.2737 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313359601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:08 Heat of formation + Delta-G solvation = -68.422383 kcal Electronic energy + Delta-G solvation = -19882.198562 eV Core-core repulsion = 16759.902184 eV Total energy + Delta-G solvation = -3122.296378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.12369 -38.20210 -35.79031 -35.10950 -33.82486 -31.93902 -31.23117 -29.71253 -26.58888 -26.06002 -24.41910 -23.10477 -21.46619 -20.14536 -18.96566 -17.79811 -16.82084 -16.51212 -16.43373 -15.69177 -15.20674 -14.88818 -14.48841 -14.43113 -14.07422 -13.64721 -13.53169 -13.13330 -12.76587 -12.53713 -12.24289 -11.88018 -11.67471 -11.52588 -11.40591 -11.05805 -10.92825 -10.71858 -10.44299 -10.20969 -10.16431 -9.49067 -9.36790 -8.86212 -8.39643 -7.95575 -7.81649 -6.41001 -3.81915 3.20172 3.25787 3.30036 3.65295 3.89440 3.93977 4.22076 4.43815 4.80352 4.96537 5.01202 5.02162 5.14053 5.25413 5.28176 5.30380 5.42317 5.54766 5.65061 5.74332 5.79185 5.91166 5.96091 5.96513 6.05702 6.23211 6.32384 6.53039 6.89552 7.21944 7.28018 7.35960 7.55402 7.69735 8.06913 8.62714 9.18671 9.55418 10.07353 10.76746 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.045504 B = 0.004153 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.176376 B = 6740.445672 C = 6892.093303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.578 6.578 12 C 0.047 3.953 13 N -0.520 5.520 14 C 0.052 3.948 15 C -0.197 4.197 16 C 0.079 3.921 17 O -0.369 6.369 18 C 0.098 3.902 19 H 0.071 0.929 20 C 0.072 3.928 21 N -0.843 5.843 22 C 0.031 3.969 23 H 0.272 0.728 24 H 0.392 0.608 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.080 0.920 35 H 0.340 0.660 36 H 0.339 0.661 37 H 0.080 0.920 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.125 -16.427 0.483 16.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.462 6.462 12 C -0.084 4.084 13 N -0.244 5.244 14 C -0.075 4.075 15 C -0.237 4.237 16 C 0.001 3.999 17 O -0.287 6.287 18 C 0.040 3.960 19 H 0.089 0.911 20 C -0.060 4.060 21 N -0.372 5.372 22 C -0.097 4.097 23 H 0.082 0.918 24 H 0.225 0.775 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.153 0.847 36 H 0.151 0.849 37 H 0.098 0.902 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.603 -16.323 0.824 16.423 hybrid contribution -0.280 1.269 -0.310 1.336 sum 1.323 -15.055 0.514 15.122 Atomic orbital electron populations 1.69606 1.05931 1.28243 1.50609 1.25255 0.95624 0.99690 0.97349 0.85921 0.78759 0.80498 0.79059 1.19893 1.20987 1.19937 1.19648 0.93319 0.82243 1.47689 0.87993 1.41864 1.09178 1.04571 1.64529 1.19742 0.88413 0.84533 0.84349 1.90501 1.13690 1.86962 1.55048 1.21824 0.93989 0.91196 1.01390 1.61770 1.26957 1.01694 1.34007 1.22069 0.96063 1.02875 0.86496 1.22970 1.01973 0.97694 1.01034 1.21798 0.96544 0.91629 0.89936 1.86465 1.70494 1.58661 1.13043 1.21924 0.99023 0.92239 0.82772 0.91144 1.21787 0.99152 0.90165 0.94866 1.58575 1.11050 1.09560 1.58024 1.22469 0.96580 0.89013 1.01649 0.91835 0.77509 0.89516 0.93470 0.88778 0.91638 0.91303 0.90595 0.89364 0.94591 0.93668 0.90173 0.84740 0.84880 0.90200 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 2 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 10 C 0.44 10.56 7.25 -10.99 -0.08 10.48 16 11 O -0.58 -15.60 14.18 5.55 0.08 -15.52 16 12 C 0.05 0.87 5.34 -4.98 -0.03 0.84 16 13 N -0.52 -8.85 4.48 -237.16 -1.06 -9.91 16 14 C 0.05 0.87 4.59 -4.22 -0.02 0.85 16 15 C -0.20 -2.71 5.63 -26.84 -0.15 -2.86 16 16 C 0.08 0.98 6.43 38.06 0.24 1.22 16 17 O -0.37 -4.96 9.49 -21.73 -0.21 -5.16 16 18 C 0.10 1.21 2.49 -27.72 -0.07 1.14 16 19 H 0.07 0.94 6.78 -51.93 -0.35 0.58 16 20 C 0.07 0.72 6.27 -3.82 -0.02 0.69 16 21 N -0.84 -7.73 9.50 -10.37 -0.10 -7.83 16 22 C 0.03 0.43 4.62 -4.54 -0.02 0.40 16 23 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 25 H 0.09 1.44 8.04 -51.93 -0.42 1.02 16 26 H 0.05 0.81 7.58 -51.92 -0.39 0.42 16 27 H 0.09 1.88 5.86 -51.93 -0.30 1.58 16 28 H 0.07 1.06 6.54 -51.93 -0.34 0.72 16 29 H 0.07 1.00 6.69 -51.93 -0.35 0.65 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.43 7.72 -51.93 -0.40 0.03 16 33 H 0.05 0.40 8.13 -51.93 -0.42 -0.02 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.34 2.38 9.08 -39.29 -0.36 2.02 16 36 H 0.34 2.84 8.99 -39.29 -0.35 2.49 16 37 H 0.08 0.99 7.74 -51.93 -0.40 0.59 16 38 H 0.05 0.64 7.12 -51.93 -0.37 0.27 16 LS Contribution 302.72 15.07 4.56 4.56 Total: -1.00 -31.43 302.72 -7.03 -38.46 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.56 Total: 12.94 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -0.39 Total: 4.76 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.49 Total: -56.12 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.13 Total: -20.69 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.43 -7.03 -38.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313359601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.963 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds