Wall clock time and date at job start Mon Mar 30 2020 04:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86795 * 119.99884 * 2 1 4 4 H 1.48500 * 109.46825 * 239.99566 * 3 2 1 5 5 H 1.48498 * 109.47307 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47115 * 120.00158 * 3 2 1 7 7 C 1.38952 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00075 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99883 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00326 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99870 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47308 * 180.02562 * 12 10 9 14 14 C 1.48026 * 111.00092 * 66.04298 * 13 12 10 15 15 C 1.50982 * 113.12744 * 84.00138 * 14 13 12 16 16 C 1.54714 * 109.07780 * 92.04412 * 15 14 13 17 17 O 1.36614 * 110.79105 * 286.64904 * 16 15 14 18 18 C 1.43448 * 117.83785 * 61.04331 * 17 16 15 19 19 H 1.08995 * 109.84360 * 37.49305 * 18 17 16 20 20 C 1.52998 * 109.84146 * 158.40089 * 18 17 16 21 21 N 1.46905 * 109.46978 * 299.99777 * 20 18 17 22 22 C 1.47394 * 111.00349 * 193.23267 * 13 12 10 23 23 H 0.96996 * 120.00246 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99896 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.47390 * 60.00141 * 12 10 9 26 26 H 1.09008 * 109.47462 * 299.99986 * 12 10 9 27 27 H 1.09002 * 108.75030 * 323.05890 * 14 13 12 28 28 H 1.08996 * 108.65576 * 204.87878 * 14 13 12 29 29 H 1.08995 * 109.54028 * 332.15862 * 15 14 13 30 30 H 1.08999 * 109.59799 * 211.96013 * 15 14 13 31 31 H 1.09004 * 109.21057 * 166.31359 * 16 15 14 32 32 H 1.08993 * 109.21078 * 46.99015 * 16 15 14 33 33 H 1.09002 * 109.47288 * 179.97438 * 20 18 17 34 34 H 1.08995 * 109.47151 * 59.99737 * 20 18 17 35 35 H 1.00901 * 110.99869 * 180.02562 * 21 20 18 36 36 H 1.00896 * 110.99543 * 303.95346 * 21 20 18 37 37 H 1.09003 * 109.06558 * 72.72510 * 22 13 12 38 38 H 1.08998 * 109.05808 * 313.80251 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0005 11 8 3.2102 -3.5579 0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1983 -5.9796 0.0007 14 6 2.9685 -6.0182 1.2642 15 6 2.2455 -6.7369 2.3778 16 6 2.6586 -8.2279 2.3693 17 8 2.0836 -8.8844 1.3182 18 6 2.4052 -8.4387 -0.0068 19 1 3.4535 -8.1443 -0.0538 20 6 2.1354 -9.5604 -1.0118 21 7 2.9638 -10.7267 -0.6778 22 6 1.5236 -7.2515 -0.3148 23 1 -0.4850 0.8400 -0.0004 24 1 0.3534 -2.3907 0.0005 25 1 0.6174 -4.9205 -0.8903 26 1 0.6167 -4.9210 0.8897 27 1 3.1725 -4.9955 1.5816 28 1 3.9168 -6.5227 1.0791 29 1 1.1693 -6.6560 2.2255 30 1 2.5127 -6.2901 3.3354 31 1 2.3390 -8.6939 3.3014 32 1 3.7430 -8.2991 2.2868 33 1 2.3812 -9.2153 -2.0161 34 1 1.0825 -9.8390 -0.9713 35 1 2.8040 -11.4817 -1.3278 36 1 3.9412 -10.4786 -0.6454 37 1 1.2659 -7.2647 -1.3738 38 1 0.6092 -7.3249 0.2737 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313359601.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:08 Heat of formation + Delta-G solvation = -94.821733 kcal Electronic energy + Delta-G solvation = -19883.343324 eV Core-core repulsion = 16759.902184 eV Total energy + Delta-G solvation = -3123.441140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.29058 -39.96279 -37.16949 -35.95336 -35.82031 -33.32180 -32.92733 -30.97485 -28.08237 -27.21190 -26.13867 -24.16953 -22.56477 -21.44063 -20.71703 -19.79692 -17.98726 -17.76892 -17.49807 -17.11509 -16.62969 -16.13469 -16.08208 -15.85057 -15.30043 -15.13080 -14.90870 -14.40001 -14.08376 -13.61616 -13.50907 -13.43267 -13.25428 -13.00311 -12.85473 -12.60181 -12.44179 -12.14291 -12.02701 -11.87513 -11.49792 -11.21933 -10.44368 -10.28907 -10.00383 -9.55382 -9.17488 -8.46819 -5.95791 1.39211 1.40972 1.51987 2.04586 2.27006 2.60147 2.80441 3.19673 3.36614 3.57728 3.78779 3.96659 3.99316 4.05746 4.20709 4.29907 4.34947 4.38571 4.51264 4.55756 4.59310 4.65340 4.73170 4.83501 4.97392 5.01171 5.10074 5.23284 5.40041 5.84954 6.04350 6.13517 6.23154 6.59953 6.63785 6.69483 7.12203 7.55609 8.11321 8.70446 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.045504 B = 0.004153 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.176376 B = 6740.445672 C = 6892.093303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.442 3.558 11 O -0.614 6.614 12 C 0.060 3.940 13 N -0.537 5.537 14 C 0.059 3.941 15 C -0.188 4.188 16 C 0.082 3.918 17 O -0.377 6.377 18 C 0.100 3.900 19 H 0.060 0.940 20 C 0.077 3.923 21 N -0.851 5.851 22 C 0.034 3.966 23 H 0.278 0.722 24 H 0.395 0.605 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.353 0.647 36 H 0.343 0.657 37 H 0.095 0.905 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -17.404 0.340 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.463 4.463 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.230 3.770 11 O -0.500 6.500 12 C -0.071 4.071 13 N -0.262 5.262 14 C -0.069 4.069 15 C -0.228 4.228 16 C 0.004 3.996 17 O -0.295 6.295 18 C 0.043 3.957 19 H 0.078 0.922 20 C -0.055 4.055 21 N -0.383 5.383 22 C -0.093 4.093 23 H 0.087 0.913 24 H 0.229 0.771 25 H 0.127 0.873 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.126 0.874 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.030 -17.332 0.676 17.375 hybrid contribution -0.081 1.516 -0.267 1.542 sum 0.949 -15.815 0.409 15.849 Atomic orbital electron populations 1.69669 1.06848 1.29364 1.50325 1.26036 0.96532 1.02388 0.96261 0.84992 0.77765 0.76649 0.78956 1.19682 1.19469 1.19716 1.19627 0.92689 0.83989 1.50027 0.90305 1.41927 1.09273 1.04685 1.65264 1.20712 0.88293 0.85843 0.82189 1.90474 1.15640 1.87794 1.56123 1.21673 0.93645 0.88687 1.03088 1.61737 1.27261 1.02838 1.34348 1.21926 0.96730 1.00757 0.87464 1.22886 1.01134 0.98663 1.00112 1.21847 0.96792 0.90423 0.90576 1.86469 1.70714 1.58787 1.13500 1.21977 0.98044 0.92690 0.83039 0.92247 1.21728 0.99477 0.89696 0.94561 1.58546 1.11292 1.09706 1.58710 1.22550 0.96559 0.87666 1.02570 0.91290 0.77090 0.87282 0.92007 0.92793 0.91667 0.91781 0.89865 0.87426 0.94241 0.92364 0.89888 0.83287 0.84459 0.88652 0.93287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 2 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 3 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -29.86 5.29 -306.98 -1.62 -31.48 16 10 C 0.44 21.41 7.25 87.66 0.64 22.05 16 11 O -0.61 -34.25 14.18 -3.07 -0.04 -34.30 16 12 C 0.06 2.17 5.34 85.56 0.46 2.62 16 13 N -0.54 -17.88 4.48 -904.25 -4.05 -21.93 16 14 C 0.06 1.96 4.59 85.43 0.39 2.35 16 15 C -0.19 -4.99 5.63 30.52 0.17 -4.82 16 16 C 0.08 1.86 6.43 72.57 0.47 2.33 16 17 O -0.38 -9.32 9.49 -100.67 -0.96 -10.28 16 18 C 0.10 2.29 2.49 29.96 0.07 2.36 16 19 H 0.06 1.50 6.78 -2.39 -0.02 1.49 16 20 C 0.08 1.35 6.27 86.30 0.54 1.89 16 21 N -0.85 -13.73 9.50 -186.71 -1.77 -15.51 16 22 C 0.03 0.86 4.62 85.57 0.40 1.26 16 23 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 24 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 25 H 0.11 3.44 8.04 -2.39 -0.02 3.42 16 26 H 0.06 2.06 7.58 -2.38 -0.02 2.04 16 27 H 0.05 2.23 5.86 -2.39 -0.01 2.21 16 28 H 0.06 2.13 6.54 -2.39 -0.02 2.11 16 29 H 0.06 1.76 6.69 -2.39 -0.02 1.75 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.04 0.88 7.72 -2.39 -0.02 0.86 16 33 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.35 4.12 9.08 -89.69 -0.81 3.31 16 36 H 0.34 5.10 8.99 -89.70 -0.81 4.29 16 37 H 0.10 2.12 7.74 -2.39 -0.02 2.10 16 38 H 0.05 1.24 7.12 -2.39 -0.02 1.22 16 Total: -1.00 -67.68 302.72 -2.97 -70.65 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -1.25 Total: 35.90 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 4.42 Total: 11.54 kcal Atomic # 7 Polarization: -111.51 SS G_CDS: -7.16 Total: -118.68 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -1.00 Total: -44.57 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.68 -2.97 -70.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313359601.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.171 kcal (2) G-P(sol) polarization free energy of solvation -67.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds