Wall clock time and date at job start Mon Mar 30 2020 05:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 O 1.42907 * 109.46801 * 240.00427 * 2 1 3 5 5 C 1.53001 * 109.47460 * 120.00476 * 2 1 3 6 6 H 1.09001 * 110.36461 * 63.00503 * 5 2 1 7 7 C 1.54384 * 110.40913 * 300.53213 * 5 2 1 8 8 C 1.54255 * 105.05764 * 217.36737 * 7 5 2 9 9 C 1.54375 * 105.06337 * 359.97438 * 8 7 5 10 10 N 1.48558 * 110.41167 * 185.35877 * 5 2 1 11 11 C 1.46894 * 111.00227 * 277.81669 * 10 5 2 12 12 C 1.52995 * 109.47271 * 163.70066 * 11 10 5 13 13 O 1.42898 * 109.47271 * 65.00035 * 12 11 10 14 14 C 1.42905 * 113.99737 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46671 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00389 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99943 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99863 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00224 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47101 * 270.00540 * 19 17 15 21 21 H 1.48496 * 109.46806 * 150.00264 * 19 17 15 22 22 H 1.48497 * 109.46699 * 30.00641 * 19 17 15 23 23 H 1.08999 * 109.46961 * 305.12786 * 1 2 3 24 24 H 1.09000 * 109.47363 * 65.12735 * 1 2 3 25 25 H 1.08999 * 109.47349 * 185.13029 * 1 2 3 26 26 H 1.09005 * 109.47115 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47609 * 300.00383 * 3 2 1 28 28 H 1.08995 * 109.46938 * 60.00166 * 3 2 1 29 29 H 0.96700 * 114.00077 * 168.90915 * 4 2 1 30 30 H 1.09001 * 110.32515 * 336.26519 * 7 5 2 31 31 H 1.09002 * 110.32163 * 98.36962 * 7 5 2 32 32 H 1.09003 * 110.32537 * 118.89919 * 8 7 5 33 33 H 1.09002 * 110.32493 * 241.09973 * 8 7 5 34 34 H 1.08998 * 110.41510 * 265.07709 * 9 8 7 35 35 H 1.09005 * 110.40842 * 142.62991 * 9 8 7 36 36 H 1.09002 * 109.47110 * 43.69455 * 11 10 5 37 37 H 1.09005 * 109.47050 * 283.70027 * 11 10 5 38 38 H 1.09003 * 109.47267 * 304.99326 * 12 11 10 39 39 H 1.09008 * 109.47084 * 185.00117 * 12 11 10 40 40 H 1.09000 * 109.47251 * 60.00099 * 14 13 12 41 41 H 1.08996 * 109.47144 * 299.99498 * 14 13 12 42 42 H 0.97000 * 119.99924 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 1 1.7292 -1.7660 1.2374 7 6 1.5265 -0.0184 2.5242 8 6 2.6950 -0.1045 3.5275 9 6 3.8160 -0.8527 2.7746 10 7 3.5197 -0.6219 1.3370 11 6 4.1665 -1.6384 0.4967 12 6 5.6352 -1.2659 0.2850 13 8 6.3243 -1.3154 1.5359 14 6 7.7111 -0.9818 1.4490 15 6 8.3348 -1.0666 2.8183 16 1 7.7323 -1.3467 3.6697 17 6 9.6746 -0.7865 2.9841 18 7 10.4082 -0.4449 1.9474 19 14 10.4476 -0.8909 4.6815 20 1 10.3430 0.4283 5.3550 21 1 11.8778 -1.2685 4.5516 22 1 9.7362 -1.9158 5.4871 23 1 -0.3633 0.5913 0.8405 24 1 -0.3634 0.4322 -0.9323 25 1 -0.3634 -1.0235 0.0919 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 2.9547 -0.5674 -1.3228 30 1 1.2860 1.0232 2.3115 31 1 0.6507 -0.5363 2.9153 32 1 3.0281 0.8949 3.8074 33 1 2.3939 -0.6655 4.4122 34 1 3.7828 -1.9178 3.0040 35 1 4.7902 -0.4374 3.0329 36 1 3.6613 -1.6875 -0.4680 37 1 4.1051 -2.6092 0.9886 38 1 5.6990 -0.2582 -0.1255 39 1 6.0923 -1.9707 -0.4098 40 1 7.8175 0.0320 1.0630 41 1 8.2115 -1.6803 0.7784 42 1 10.0067 -0.3903 1.0661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339044753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:56 Heat of formation + Delta-G solvation = -102.874514 kcal Electronic energy + Delta-G solvation = -20532.900546 eV Core-core repulsion = 17512.650554 eV Total energy + Delta-G solvation = -3020.249991 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.00672 -37.11046 -36.37132 -33.53579 -32.75391 -31.65139 -28.27304 -27.75023 -27.38896 -26.19346 -22.81449 -22.46870 -21.66299 -20.50086 -19.53639 -17.27365 -16.95751 -16.07491 -15.61682 -15.37889 -14.75920 -14.53670 -14.04422 -13.76371 -13.55543 -13.41752 -13.12951 -12.62925 -12.57104 -12.29439 -12.17886 -11.93150 -11.72726 -11.67133 -11.28906 -11.11852 -11.04720 -10.78497 -10.70805 -10.58677 -10.42468 -10.19629 -10.11697 -9.73478 -8.83015 -8.62715 -8.29408 -8.21943 -6.46322 -4.14897 3.41797 3.45966 3.62221 4.02508 4.07097 4.43874 4.62194 4.72315 4.79920 4.91050 5.04872 5.08692 5.16015 5.31733 5.42293 5.45315 5.53368 5.58802 5.62440 5.68917 5.80970 5.86288 5.88390 5.90892 5.97418 5.99999 6.06796 6.18174 6.21825 6.30230 6.35645 6.59979 6.78471 7.06751 7.14129 7.20960 7.58339 7.89963 8.18942 8.64130 8.81545 9.55838 10.93984 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.004667 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.510866 B = 5998.421843 C = 6478.170377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.142 3.858 3 C -0.172 4.172 4 O -0.566 6.566 5 C 0.034 3.966 6 H 0.054 0.946 7 C -0.119 4.119 8 C -0.127 4.127 9 C 0.043 3.957 10 N -0.498 5.498 11 C 0.036 3.964 12 C 0.066 3.934 13 O -0.383 6.383 14 C 0.187 3.813 15 C -0.594 4.594 16 H 0.059 0.941 17 C 0.017 3.983 18 N -0.912 5.912 19 Si 1.080 2.920 20 H -0.286 1.286 21 H -0.283 1.283 22 H -0.287 1.287 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.378 0.622 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.038 0.962 40 H -0.005 1.005 41 H -0.008 1.008 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.191 1.334 -2.360 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.101 3.899 3 C -0.230 4.230 4 O -0.376 6.376 5 C -0.075 4.075 6 H 0.072 0.928 7 C -0.157 4.157 8 C -0.165 4.165 9 C -0.085 4.085 10 N -0.222 5.222 11 C -0.092 4.092 12 C -0.012 4.012 13 O -0.302 6.302 14 C 0.112 3.888 15 C -0.632 4.632 16 H 0.077 0.923 17 C -0.186 4.186 18 N -0.548 5.548 19 Si 0.908 3.092 20 H -0.213 1.213 21 H -0.209 1.209 22 H -0.213 1.213 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.229 0.771 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.059 0.941 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.012 0.988 41 H 0.010 0.990 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.255 1.812 -1.596 18.414 hybrid contribution -0.936 -0.856 -0.876 1.542 sum -19.192 0.956 -2.473 19.374 Atomic orbital electron populations 1.21778 0.93031 1.02423 1.02383 1.21085 0.93761 0.91336 0.83693 1.22424 1.03364 0.95538 1.01642 1.86513 1.29569 1.75736 1.45776 1.23315 0.90048 0.98524 0.95584 0.92795 1.22394 0.97860 1.01101 0.94314 1.22345 0.95172 1.01335 0.97653 1.23166 1.00217 0.98481 0.86590 1.65362 1.04348 1.45450 1.07031 1.22603 0.94512 0.93920 0.98169 1.22293 0.91122 0.99241 0.88574 1.87878 1.24284 1.90436 1.27595 1.20247 0.77055 0.93161 0.98292 1.21903 0.96720 1.51138 0.93478 0.92252 1.25910 0.93655 0.93577 1.05489 1.70766 1.39009 1.44654 1.00379 0.83383 0.75788 0.76645 0.73407 1.21255 1.20872 1.21293 0.91125 0.91873 0.92268 0.90544 0.92833 0.91613 0.77061 0.90642 0.91715 0.91090 0.91739 0.94138 0.87887 0.89360 0.93788 0.93814 0.94355 0.98774 0.99018 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.50 37.16 0.32 -0.99 16 2 C 0.14 1.60 0.99 -90.62 -0.09 1.51 16 3 C -0.17 -1.89 8.28 37.16 0.31 -1.59 16 4 O -0.57 -7.00 11.99 -35.23 -0.42 -7.42 16 5 C 0.03 0.42 1.93 -66.07 -0.13 0.29 16 6 H 0.05 0.71 7.99 -51.93 -0.42 0.29 16 7 C -0.12 -1.29 5.38 -25.35 -0.14 -1.42 16 8 C -0.13 -1.59 7.00 -25.35 -0.18 -1.77 16 9 C 0.04 0.68 5.61 -2.17 -0.01 0.67 16 10 N -0.50 -7.30 4.05 -222.12 -0.90 -8.20 16 11 C 0.04 0.55 5.05 -3.83 -0.02 0.53 16 12 C 0.07 1.20 6.28 37.16 0.23 1.44 16 13 O -0.38 -9.03 8.20 -35.23 -0.29 -9.32 16 14 C 0.19 5.09 5.00 36.01 0.18 5.27 16 15 C -0.59 -17.58 9.43 -34.44 -0.32 -17.91 16 16 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.02 0.49 5.46 -17.82 -0.10 0.40 16 18 N -0.91 -28.05 13.65 55.43 0.76 -27.30 16 19 Si 1.08 25.53 29.90 -169.99 -5.08 20.45 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.07 0.56 7.24 -51.93 -0.38 0.18 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.97 7.51 -51.93 -0.39 0.58 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.67 6.14 -51.93 -0.32 0.35 16 29 H 0.38 4.23 6.52 45.56 0.30 4.53 16 30 H 0.08 0.76 5.53 -51.93 -0.29 0.47 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.04 0.67 7.67 -51.93 -0.40 0.27 16 35 H 0.10 2.01 6.95 -51.93 -0.36 1.65 16 36 H 0.09 1.13 4.62 -51.93 -0.24 0.89 16 37 H 0.04 0.71 7.63 -51.93 -0.40 0.31 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 40 H -0.01 -0.15 8.01 -51.93 -0.42 -0.57 16 41 H -0.01 -0.22 8.01 -51.93 -0.42 -0.63 16 42 H 0.27 8.18 7.22 -40.82 -0.29 7.89 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -31.65 322.03 -7.63 -39.29 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.60 Total: 1.23 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 0.05 Total: -13.59 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.14 Total: -35.50 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.71 Total: -16.74 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.45 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.65 -7.63 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339044753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.587 kcal (2) G-P(sol) polarization free energy of solvation -31.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds