Wall clock time and date at job start Mon Mar 30 2020 05:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47284 * 2 1 4 4 O 1.42907 * 109.46801 * 240.00427 * 2 1 3 5 5 C 1.53001 * 109.47460 * 120.00476 * 2 1 3 6 6 H 1.09001 * 110.36461 * 63.00503 * 5 2 1 7 7 C 1.54384 * 110.40913 * 300.53213 * 5 2 1 8 8 C 1.54255 * 105.05764 * 217.36737 * 7 5 2 9 9 C 1.54375 * 105.06337 * 359.97438 * 8 7 5 10 10 N 1.48558 * 110.41167 * 185.35877 * 5 2 1 11 11 C 1.46894 * 111.00227 * 277.81669 * 10 5 2 12 12 C 1.52995 * 109.47271 * 163.70066 * 11 10 5 13 13 O 1.42898 * 109.47271 * 65.00035 * 12 11 10 14 14 C 1.42905 * 113.99737 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46671 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00389 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99943 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99863 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00224 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47101 * 270.00540 * 19 17 15 21 21 H 1.48496 * 109.46806 * 150.00264 * 19 17 15 22 22 H 1.48497 * 109.46699 * 30.00641 * 19 17 15 23 23 H 1.08999 * 109.46961 * 305.12786 * 1 2 3 24 24 H 1.09000 * 109.47363 * 65.12735 * 1 2 3 25 25 H 1.08999 * 109.47349 * 185.13029 * 1 2 3 26 26 H 1.09005 * 109.47115 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47609 * 300.00383 * 3 2 1 28 28 H 1.08995 * 109.46938 * 60.00166 * 3 2 1 29 29 H 0.96700 * 114.00077 * 168.90915 * 4 2 1 30 30 H 1.09001 * 110.32515 * 336.26519 * 7 5 2 31 31 H 1.09002 * 110.32163 * 98.36962 * 7 5 2 32 32 H 1.09003 * 110.32537 * 118.89919 * 8 7 5 33 33 H 1.09002 * 110.32493 * 241.09973 * 8 7 5 34 34 H 1.08998 * 110.41510 * 265.07709 * 9 8 7 35 35 H 1.09005 * 110.40842 * 142.62991 * 9 8 7 36 36 H 1.09002 * 109.47110 * 43.69455 * 11 10 5 37 37 H 1.09005 * 109.47050 * 283.70027 * 11 10 5 38 38 H 1.09003 * 109.47267 * 304.99326 * 12 11 10 39 39 H 1.09008 * 109.47084 * 185.00117 * 12 11 10 40 40 H 1.09000 * 109.47251 * 60.00099 * 14 13 12 41 41 H 1.08996 * 109.47144 * 299.99498 * 14 13 12 42 42 H 0.97000 * 119.99924 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0400 -0.7213 1.2492 6 1 1.7292 -1.7660 1.2374 7 6 1.5265 -0.0184 2.5242 8 6 2.6950 -0.1045 3.5275 9 6 3.8160 -0.8527 2.7746 10 7 3.5197 -0.6219 1.3370 11 6 4.1665 -1.6384 0.4967 12 6 5.6352 -1.2659 0.2850 13 8 6.3243 -1.3154 1.5359 14 6 7.7111 -0.9818 1.4490 15 6 8.3348 -1.0666 2.8183 16 1 7.7323 -1.3467 3.6697 17 6 9.6746 -0.7865 2.9841 18 7 10.4082 -0.4449 1.9474 19 14 10.4476 -0.8909 4.6815 20 1 10.3430 0.4283 5.3550 21 1 11.8778 -1.2685 4.5516 22 1 9.7362 -1.9158 5.4871 23 1 -0.3633 0.5913 0.8405 24 1 -0.3634 0.4322 -0.9323 25 1 -0.3634 -1.0235 0.0919 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 2.9547 -0.5674 -1.3228 30 1 1.2860 1.0232 2.3115 31 1 0.6507 -0.5363 2.9153 32 1 3.0281 0.8949 3.8074 33 1 2.3939 -0.6655 4.4122 34 1 3.7828 -1.9178 3.0040 35 1 4.7902 -0.4374 3.0329 36 1 3.6613 -1.6875 -0.4680 37 1 4.1051 -2.6092 0.9886 38 1 5.6990 -0.2582 -0.1255 39 1 6.0923 -1.9707 -0.4098 40 1 7.8175 0.0320 1.0630 41 1 8.2115 -1.6803 0.7784 42 1 10.0067 -0.3903 1.0661 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339044753.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:56 Heat of formation + Delta-G solvation = -125.515595 kcal Electronic energy + Delta-G solvation = -20533.882336 eV Core-core repulsion = 17512.650554 eV Total energy + Delta-G solvation = -3021.231782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.05828 -38.75668 -37.57135 -35.37469 -34.25736 -32.74445 -29.81556 -28.79321 -28.21911 -28.14914 -24.77767 -23.90005 -22.82770 -21.71191 -20.48684 -19.17087 -18.29315 -17.54426 -17.22104 -16.39602 -16.11851 -15.75805 -15.71930 -15.36173 -14.88954 -14.69653 -14.46724 -13.96698 -13.82121 -13.71625 -13.24586 -13.10910 -12.94389 -12.83068 -12.62391 -12.57248 -12.48460 -12.15137 -11.94194 -11.88418 -11.84476 -11.59649 -11.34941 -10.86487 -10.83498 -10.72383 -10.32845 -9.48490 -8.83855 -6.54601 1.51189 1.60880 1.80463 2.48328 2.88821 3.03215 3.04361 3.21566 3.64986 3.73688 3.92034 4.04208 4.11030 4.20327 4.28276 4.29501 4.42065 4.42999 4.51406 4.60272 4.63016 4.74868 4.77978 4.84539 4.90008 4.93102 4.98232 5.00806 5.04501 5.16915 5.20704 5.28346 5.40413 5.45016 5.67226 5.88653 5.92047 6.02391 6.32946 6.66506 6.68329 7.26379 8.57246 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.032798 B = 0.004667 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.510866 B = 5998.421843 C = 6478.170377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.140 3.860 3 C -0.168 4.168 4 O -0.576 6.576 5 C 0.036 3.964 6 H 0.049 0.951 7 C -0.112 4.112 8 C -0.122 4.122 9 C 0.042 3.958 10 N -0.505 5.505 11 C 0.047 3.953 12 C 0.058 3.942 13 O -0.393 6.393 14 C 0.199 3.801 15 C -0.619 4.619 16 H 0.052 0.948 17 C -0.029 4.029 18 N -0.929 5.929 19 Si 1.129 2.871 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.270 1.270 23 H 0.089 0.911 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.380 0.620 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.029 0.971 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.034 0.966 38 H 0.045 0.955 39 H 0.047 0.953 40 H -0.021 1.021 41 H -0.022 1.022 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.065 1.608 -1.603 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.100 3.900 3 C -0.225 4.225 4 O -0.386 6.386 5 C -0.073 4.073 6 H 0.067 0.933 7 C -0.149 4.149 8 C -0.160 4.160 9 C -0.086 4.086 10 N -0.229 5.229 11 C -0.081 4.081 12 C -0.019 4.019 13 O -0.312 6.312 14 C 0.123 3.877 15 C -0.656 4.656 16 H 0.070 0.930 17 C -0.226 4.226 18 N -0.566 5.566 19 Si 0.949 3.051 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.195 1.195 23 H 0.108 0.892 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.232 0.768 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.052 0.948 38 H 0.064 0.936 39 H 0.065 0.935 40 H -0.004 1.004 41 H -0.004 1.004 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.166 2.089 -0.868 20.292 hybrid contribution -0.413 -0.945 -1.204 1.585 sum -20.579 1.144 -2.072 20.714 Atomic orbital electron populations 1.21799 0.91207 1.02919 1.03456 1.21229 0.95045 0.91031 0.82718 1.22376 1.01898 0.95665 1.02591 1.86514 1.29827 1.76030 1.46278 1.23403 0.87991 0.98743 0.97150 0.93262 1.22418 0.97680 1.02078 0.92758 1.22312 0.94572 1.00828 0.98269 1.23023 0.99538 0.97918 0.88145 1.65313 1.06354 1.45089 1.06113 1.22536 0.92510 0.93420 0.99673 1.22612 0.92754 0.99750 0.86805 1.87866 1.22455 1.90298 1.30584 1.19901 0.78989 0.91803 0.96993 1.22241 0.97473 1.51672 0.94229 0.92962 1.27576 0.94308 0.92020 1.08697 1.70895 1.39247 1.46008 1.00441 0.82798 0.75326 0.78014 0.69011 1.19275 1.20086 1.19517 0.89194 0.91556 0.92243 0.92720 0.91983 0.90594 0.76825 0.89332 0.89366 0.91280 0.90312 0.95282 0.92225 0.86564 0.94763 0.93636 0.93508 1.00369 1.00409 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.50 71.98 0.61 -1.54 16 2 C 0.14 2.84 0.99 -10.79 -0.01 2.83 16 3 C -0.17 -3.36 8.28 71.98 0.60 -2.77 16 4 O -0.58 -13.19 11.99 -148.98 -1.79 -14.98 16 5 C 0.04 0.81 1.93 45.06 0.09 0.89 16 6 H 0.05 1.19 7.99 -2.39 -0.02 1.17 16 7 C -0.11 -2.10 5.38 31.49 0.17 -1.93 16 8 C -0.12 -2.89 7.00 31.49 0.22 -2.67 16 9 C 0.04 1.35 5.61 86.44 0.49 1.83 16 10 N -0.50 -14.64 4.05 -856.65 -3.47 -18.11 16 11 C 0.05 1.41 5.05 86.30 0.44 1.84 16 12 C 0.06 2.17 6.28 71.98 0.45 2.62 16 13 O -0.39 -19.22 8.20 -148.98 -1.22 -20.44 16 14 C 0.20 11.22 5.00 71.24 0.36 11.58 16 15 C -0.62 -37.50 9.43 25.60 0.24 -37.26 16 16 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 17 C -0.03 -1.69 5.46 84.66 0.46 -1.23 16 18 N -0.93 -58.00 13.65 21.45 0.29 -57.70 16 19 Si 1.13 50.83 29.90 68.60 2.05 52.88 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H 0.09 1.07 7.24 -2.39 -0.02 1.05 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 1.34 7.51 -2.38 -0.02 1.32 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.35 6.14 -2.39 -0.01 1.34 16 29 H 0.38 8.00 6.52 -74.06 -0.48 7.52 16 30 H 0.09 1.47 5.53 -2.39 -0.01 1.45 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.03 0.98 7.67 -2.39 -0.02 0.96 16 35 H 0.06 2.44 6.95 -2.38 -0.02 2.43 16 36 H 0.12 2.84 4.62 -2.39 -0.01 2.83 16 37 H 0.03 1.10 7.63 -2.38 -0.02 1.08 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.66 8.14 -2.38 -0.02 1.65 16 40 H -0.02 -1.25 8.01 -2.39 -0.02 -1.27 16 41 H -0.02 -1.26 8.01 -2.39 -0.02 -1.28 16 42 H 0.26 16.12 7.22 -92.71 -0.67 15.45 16 Total: -1.00 -69.12 322.03 0.58 -68.54 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.61 Total: 15.60 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 4.11 Total: -25.79 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -3.18 Total: -75.81 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -3.01 Total: -35.42 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.05 Total: 52.88 kcal Total: -69.12 0.58 -68.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339044753.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.975 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds