Wall clock time and date at job start Mon Mar 30 2020 05:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46611 * 2 1 4 4 C 1.53005 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.51202 * 54.90973 * 4 3 2 6 6 C 1.53093 * 109.50791 * 175.00290 * 4 3 2 7 7 N 1.47018 * 109.26249 * 176.78235 * 6 4 3 8 8 C 1.46894 * 110.99995 * 177.60443 * 7 6 4 9 9 C 1.53009 * 109.46764 * 170.00103 * 8 7 6 10 10 O 1.42899 * 109.47113 * 64.99856 * 9 8 7 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46878 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.47012 * 110.74751 * 301.38238 * 7 6 4 21 21 C 1.53103 * 109.26189 * 58.61588 * 20 7 6 22 22 O 1.43017 * 109.50472 * 294.77850 * 4 3 2 23 23 H 1.09005 * 109.47647 * 299.99589 * 1 2 3 24 24 H 1.08998 * 109.47967 * 60.00054 * 1 2 3 25 25 H 1.09006 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47299 * 240.00501 * 2 1 3 27 27 H 1.08996 * 109.47520 * 119.99674 * 2 1 3 28 28 H 1.09002 * 109.47320 * 60.00400 * 3 2 1 29 29 H 1.08996 * 109.47438 * 300.00046 * 3 2 1 30 30 H 1.08999 * 109.50935 * 56.84579 * 6 4 3 31 31 H 1.09007 * 109.50489 * 296.71584 * 6 4 3 32 32 H 1.09000 * 109.47283 * 50.00052 * 8 7 6 33 33 H 1.09002 * 109.47562 * 289.99372 * 8 7 6 34 34 H 1.09007 * 109.46516 * 304.99789 * 9 8 7 35 35 H 1.09004 * 109.47113 * 185.00258 * 9 8 7 36 36 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 37 37 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 38 38 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.50332 * 178.54963 * 20 7 6 40 40 H 1.08998 * 109.50836 * 298.67792 * 20 7 6 41 41 H 1.08993 * 109.50720 * 183.21392 * 21 20 7 42 42 H 1.08997 * 109.53876 * 63.10186 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8522 -0.8415 6 6 4.0810 2.8803 -0.1263 7 7 5.5491 2.8816 -0.0489 8 6 6.0842 4.2385 -0.2225 9 6 7.5779 4.2440 0.1093 10 8 8.2793 3.4368 -0.8385 11 6 9.6897 3.3737 -0.6173 12 6 10.3245 2.5005 -1.6687 13 1 9.7123 2.0401 -2.4300 14 6 11.6871 2.2901 -1.6593 15 7 12.4327 2.8511 -0.7326 16 14 12.4741 1.2083 -2.9630 17 1 11.4256 0.7006 -3.8840 18 1 13.4658 2.0020 -3.7323 19 1 13.1566 0.0626 -2.3096 20 6 6.0042 2.2939 1.2195 21 6 5.4739 0.8621 1.3318 22 8 4.0479 0.8775 1.2231 23 1 -0.3634 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6765 1.9564 -0.8899 30 1 3.6732 3.4838 0.6846 31 1 3.7667 3.2959 -1.0838 32 1 5.5612 4.9235 0.4450 33 1 5.9403 4.5566 -1.2551 34 1 7.7289 3.8420 1.1113 35 1 7.9558 5.2655 0.0669 36 1 9.8843 2.9535 0.3695 37 1 10.1117 4.3771 -0.6745 38 1 13.3913 2.7028 -0.7258 39 1 7.0939 2.2815 1.2446 40 1 5.6272 2.8880 2.0519 41 1 5.7609 0.4422 2.2958 42 1 5.8935 0.2540 0.5304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339058382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:16 Heat of formation + Delta-G solvation = -102.362402 kcal Electronic energy + Delta-G solvation = -19708.398379 eV Core-core repulsion = 16688.170594 eV Total energy + Delta-G solvation = -3020.227785 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72497 -37.16131 -35.48427 -34.86977 -32.68756 -31.34418 -29.80511 -27.82166 -26.79300 -24.85485 -23.53591 -22.30502 -21.59895 -20.86318 -20.00686 -16.64011 -16.51009 -16.28727 -15.66540 -15.29876 -14.97626 -14.63184 -14.59013 -14.42911 -14.17953 -13.43435 -13.42908 -12.95650 -12.82476 -12.32461 -12.11371 -11.89917 -11.77054 -11.44298 -11.12259 -11.07137 -11.05262 -10.82701 -10.77554 -10.73188 -10.48646 -10.24085 -9.97453 -9.46260 -9.07210 -8.80536 -8.17117 -8.11210 -6.09861 -4.10906 3.30206 3.36675 3.43761 3.77329 3.91549 4.36122 4.59924 4.83740 4.89585 4.94047 5.08489 5.13475 5.16847 5.26821 5.27730 5.35562 5.43894 5.52975 5.58104 5.62106 5.64404 5.68855 5.75338 5.85911 5.87558 5.96926 5.98424 6.06496 6.12269 6.19981 6.22617 6.28124 7.08976 7.13469 7.17470 7.28800 7.42940 7.82262 8.17220 8.60640 9.03843 9.54086 11.01848 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.028591 B = 0.003855 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.104167 B = 7261.538445 C = 7708.725422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.093 3.907 5 H 0.068 0.932 6 C 0.024 3.976 7 N -0.523 5.523 8 C 0.062 3.938 9 C 0.058 3.942 10 O -0.380 6.380 11 C 0.193 3.807 12 C -0.510 4.510 13 H 0.067 0.933 14 C 0.055 3.945 15 N -0.900 5.900 16 Si 0.907 3.093 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.014 3.986 21 C 0.065 3.935 22 O -0.385 6.385 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.041 0.959 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.263 0.737 39 H 0.099 0.901 40 H 0.034 0.966 41 H 0.096 0.904 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.049 -1.411 3.941 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.035 3.965 5 H 0.086 0.914 6 C -0.104 4.104 7 N -0.248 5.248 8 C -0.066 4.066 9 C -0.020 4.020 10 O -0.300 6.300 11 C 0.119 3.881 12 C -0.548 4.548 13 H 0.086 0.914 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.734 3.266 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.114 4.114 21 C -0.011 4.011 22 O -0.304 6.304 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.053 0.947 41 H 0.114 0.886 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.886 -1.850 3.600 20.294 hybrid contribution 0.715 0.402 0.138 0.831 sum -19.172 -1.449 3.738 19.586 Atomic orbital electron populations 1.21780 0.96101 1.01478 1.01568 1.21464 0.95329 0.96510 1.02643 1.21610 0.92773 0.97840 1.02553 1.22169 0.93889 0.92715 0.87703 0.91419 1.22801 0.88664 0.97440 1.01530 1.62135 1.07403 1.21314 1.33930 1.22174 0.94276 0.88218 1.01902 1.22391 0.91172 0.95005 0.93440 1.87970 1.22354 1.68802 1.50825 1.20199 0.75187 0.96088 0.96635 1.21097 0.92016 1.29121 1.12609 0.91437 1.24955 0.96868 0.96354 0.96431 1.69975 1.05797 1.44273 1.33921 0.86291 0.79131 0.79944 0.81205 1.19433 1.20894 1.20860 1.22890 1.02568 0.95887 0.90012 1.22657 0.80380 0.95731 1.02374 1.87922 1.21442 1.82295 1.38723 0.92878 0.92915 0.92867 0.92075 0.91202 0.91360 0.90636 0.94539 0.89957 0.94355 0.89839 0.94236 0.94099 0.97951 0.97943 0.92765 0.88243 0.94743 0.88634 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.15 0.37 -0.79 16 2 C -0.12 -1.12 5.83 -26.73 -0.16 -1.28 16 3 C -0.11 -1.06 4.92 -26.73 -0.13 -1.19 16 4 C 0.09 1.15 2.80 -26.68 -0.07 1.07 16 5 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 6 C 0.02 0.31 4.91 -3.71 -0.02 0.29 16 7 N -0.52 -8.21 4.82 -234.30 -1.13 -9.34 16 8 C 0.06 0.96 5.66 -3.82 -0.02 0.94 16 9 C 0.06 1.08 5.43 37.16 0.20 1.28 16 10 O -0.38 -9.23 10.27 -35.23 -0.36 -9.60 16 11 C 0.19 5.33 5.69 36.01 0.20 5.53 16 12 C -0.51 -15.15 9.43 -34.44 -0.32 -15.48 16 13 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 14 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 16 Si 0.91 22.02 29.54 -169.99 -5.02 16.99 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.01 0.22 4.94 -3.71 -0.02 0.20 16 21 C 0.07 0.90 7.01 37.21 0.26 1.17 16 22 O -0.38 -5.30 10.02 -35.23 -0.35 -5.66 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.72 7.83 -51.93 -0.41 0.31 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.04 0.71 5.95 -51.93 -0.31 0.40 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 37 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.10 1.69 5.94 -51.93 -0.31 1.39 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 335.46 15.07 5.06 5.06 Total: -1.00 -31.64 335.46 -8.63 -40.27 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -7.75 Total: -4.62 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 0.19 Total: -6.76 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.39 Total: -35.69 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.71 Total: -15.25 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.64 -8.63 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339058382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.090 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds