Wall clock time and date at job start Mon Mar 30 2020 05:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46611 * 2 1 4 4 C 1.53005 * 109.46932 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.51202 * 54.90973 * 4 3 2 6 6 C 1.53093 * 109.50791 * 175.00290 * 4 3 2 7 7 N 1.47018 * 109.26249 * 176.78235 * 6 4 3 8 8 C 1.46894 * 110.99995 * 177.60443 * 7 6 4 9 9 C 1.53009 * 109.46764 * 170.00103 * 8 7 6 10 10 O 1.42899 * 109.47113 * 64.99856 * 9 8 7 11 11 C 1.42903 * 113.99629 * 180.02562 * 10 9 8 12 12 C 1.50701 * 109.46878 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47432 * 0.02562 * 16 14 12 18 18 H 1.48506 * 109.46890 * 120.00210 * 16 14 12 19 19 H 1.48501 * 109.47062 * 240.00257 * 16 14 12 20 20 C 1.47012 * 110.74751 * 301.38238 * 7 6 4 21 21 C 1.53103 * 109.26189 * 58.61588 * 20 7 6 22 22 O 1.43017 * 109.50472 * 294.77850 * 4 3 2 23 23 H 1.09005 * 109.47647 * 299.99589 * 1 2 3 24 24 H 1.08998 * 109.47967 * 60.00054 * 1 2 3 25 25 H 1.09006 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47299 * 240.00501 * 2 1 3 27 27 H 1.08996 * 109.47520 * 119.99674 * 2 1 3 28 28 H 1.09002 * 109.47320 * 60.00400 * 3 2 1 29 29 H 1.08996 * 109.47438 * 300.00046 * 3 2 1 30 30 H 1.08999 * 109.50935 * 56.84579 * 6 4 3 31 31 H 1.09007 * 109.50489 * 296.71584 * 6 4 3 32 32 H 1.09000 * 109.47283 * 50.00052 * 8 7 6 33 33 H 1.09002 * 109.47562 * 289.99372 * 8 7 6 34 34 H 1.09007 * 109.46516 * 304.99789 * 9 8 7 35 35 H 1.09004 * 109.47113 * 185.00258 * 9 8 7 36 36 H 1.09002 * 109.47382 * 59.99956 * 11 10 9 37 37 H 1.09001 * 109.46938 * 299.99942 * 11 10 9 38 38 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.50332 * 178.54963 * 20 7 6 40 40 H 1.08998 * 109.50836 * 298.67792 * 20 7 6 41 41 H 1.08993 * 109.50720 * 183.21392 * 21 20 7 42 42 H 1.08997 * 109.53876 * 63.10186 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8522 -0.8415 6 6 4.0810 2.8803 -0.1263 7 7 5.5491 2.8816 -0.0489 8 6 6.0842 4.2385 -0.2225 9 6 7.5779 4.2440 0.1093 10 8 8.2793 3.4368 -0.8385 11 6 9.6897 3.3737 -0.6173 12 6 10.3245 2.5005 -1.6687 13 1 9.7123 2.0401 -2.4300 14 6 11.6871 2.2901 -1.6593 15 7 12.4327 2.8511 -0.7326 16 14 12.4741 1.2083 -2.9630 17 1 11.4256 0.7006 -3.8840 18 1 13.4658 2.0020 -3.7323 19 1 13.1566 0.0626 -2.3096 20 6 6.0042 2.2939 1.2195 21 6 5.4739 0.8621 1.3318 22 8 4.0479 0.8775 1.2231 23 1 -0.3634 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.6765 1.9564 0.8900 29 1 1.6765 1.9564 -0.8899 30 1 3.6732 3.4838 0.6846 31 1 3.7667 3.2959 -1.0838 32 1 5.5612 4.9235 0.4450 33 1 5.9403 4.5566 -1.2551 34 1 7.7289 3.8420 1.1113 35 1 7.9558 5.2655 0.0669 36 1 9.8843 2.9535 0.3695 37 1 10.1117 4.3771 -0.6745 38 1 13.3913 2.7028 -0.7258 39 1 7.0939 2.2815 1.2446 40 1 5.6272 2.8880 2.0519 41 1 5.7609 0.4422 2.2958 42 1 5.8935 0.2540 0.5304 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339058382.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:15 Heat of formation + Delta-G solvation = -123.915747 kcal Electronic energy + Delta-G solvation = -19709.333002 eV Core-core repulsion = 16688.170594 eV Total energy + Delta-G solvation = -3021.162408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.83258 -38.77332 -36.81846 -35.77827 -34.87449 -32.30005 -31.23616 -29.31611 -28.38255 -25.97437 -24.66225 -24.46701 -22.62289 -21.79209 -21.17736 -18.63270 -17.79940 -17.56587 -17.37025 -16.61669 -16.29305 -16.03107 -15.84698 -15.62366 -15.40814 -14.99778 -14.73270 -14.12614 -13.82719 -13.65381 -13.53413 -13.12914 -12.96920 -12.78683 -12.74864 -12.55911 -12.34649 -12.23401 -12.05655 -11.87756 -11.73923 -11.50061 -11.30369 -11.21086 -10.86942 -10.56300 -10.20751 -9.28669 -8.32826 -6.44588 1.39567 1.40807 1.55856 2.34506 2.70640 2.84849 3.01018 3.18949 3.71753 3.94285 3.96043 4.09615 4.14426 4.18412 4.21623 4.28184 4.34107 4.46597 4.51539 4.59775 4.63422 4.69908 4.75679 4.80731 4.83196 4.88531 4.94741 4.98876 5.02634 5.11786 5.17322 5.29999 5.39370 5.51290 5.55117 5.94762 5.97724 6.03884 6.22516 6.54801 6.83845 7.27610 8.79741 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.028591 B = 0.003855 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.104167 B = 7261.538445 C = 7708.725422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.103 4.103 4 C 0.090 3.910 5 H 0.054 0.946 6 C 0.027 3.973 7 N -0.549 5.549 8 C 0.070 3.930 9 C 0.049 3.951 10 O -0.395 6.395 11 C 0.209 3.791 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.006 3.994 15 N -0.931 5.931 16 Si 0.982 3.018 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.018 3.982 21 C 0.068 3.932 22 O -0.390 6.390 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.049 0.951 36 H -0.016 1.016 37 H -0.016 1.016 38 H 0.271 0.729 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.264 -1.596 3.407 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.141 4.141 4 C 0.032 3.968 5 H 0.072 0.928 6 C -0.101 4.101 7 N -0.274 5.274 8 C -0.057 4.057 9 C -0.028 4.028 10 O -0.314 6.314 11 C 0.134 3.866 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.571 5.571 16 Si 0.805 3.195 17 H -0.189 1.189 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.110 4.110 21 C -0.009 4.009 22 O -0.309 6.309 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.114 0.886 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.002 0.998 37 H 0.002 0.998 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.064 0.936 41 H 0.132 0.868 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.127 -2.022 3.078 21.446 hybrid contribution 1.044 0.501 0.355 1.211 sum -20.084 -1.521 3.433 20.432 Atomic orbital electron populations 1.21750 0.94654 1.02017 1.02167 1.21444 0.96575 0.96104 1.01788 1.21606 0.90565 0.98300 1.03579 1.22320 0.95612 0.92185 0.86696 0.92820 1.22858 0.86707 0.97872 1.02629 1.62110 1.09445 1.21463 1.34410 1.22106 0.91889 0.89095 1.02645 1.22719 0.92870 0.94519 0.92715 1.87922 1.20623 1.70188 1.52696 1.19799 0.77087 0.94471 0.95217 1.21393 0.92992 1.30429 1.13374 0.92255 1.25953 0.97115 0.97454 0.98722 1.70072 1.06483 1.45070 1.35430 0.85146 0.78118 0.78076 0.78130 1.18937 1.19599 1.19598 1.22789 1.00966 0.96836 0.90375 1.22634 0.80611 0.94844 1.02788 1.87926 1.21027 1.82480 1.39460 0.92546 0.92015 0.92436 0.92379 0.92679 0.91016 0.88804 0.93512 0.88612 0.91223 0.89847 0.93778 0.93277 0.99846 0.99835 0.92055 0.90903 0.93563 0.86800 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.25 16 2 C -0.12 -2.07 5.83 30.59 0.18 -1.89 16 3 C -0.10 -1.77 4.92 30.60 0.15 -1.62 16 4 C 0.09 2.10 2.80 30.63 0.09 2.19 16 5 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 6 C 0.03 0.64 4.91 86.31 0.42 1.06 16 7 N -0.55 -16.78 4.82 -895.19 -4.32 -21.09 16 8 C 0.07 2.08 5.66 86.31 0.49 2.57 16 9 C 0.05 1.83 5.43 71.99 0.39 2.22 16 10 O -0.39 -19.65 10.27 -148.98 -1.53 -21.18 16 11 C 0.21 11.95 5.69 71.24 0.41 12.36 16 12 C -0.54 -33.01 9.43 25.60 0.24 -32.77 16 13 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 14 C 0.01 0.34 5.46 84.66 0.46 0.80 16 15 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 16 Si 0.98 44.97 29.54 68.60 2.03 47.00 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 C 0.02 0.55 4.94 86.32 0.43 0.98 16 21 C 0.07 1.88 7.01 72.02 0.50 2.38 16 22 O -0.39 -10.41 10.02 -148.98 -1.49 -11.90 16 23 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.10 7.83 -2.39 -0.02 1.08 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.04 1.61 5.95 -2.38 -0.01 1.60 16 35 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 36 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 37 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 38 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.07 2.55 5.94 -2.38 -0.01 2.54 16 40 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -67.92 335.46 0.39 -67.53 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.95 Total: 8.79 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 4.47 Total: -12.98 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -4.03 Total: -77.26 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -3.02 Total: -33.08 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.92 0.39 -67.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339058382.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.386 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds