Wall clock time and date at job start Mon Mar 30 2020 04:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00197 * 2 1 4 4 C 1.53004 * 109.52494 * 300.13241 * 3 2 1 5 5 C 1.53119 * 109.52104 * 180.02562 * 3 2 1 6 6 C 1.53035 * 109.31013 * 297.72835 * 5 3 2 7 7 N 1.46847 * 109.52648 * 300.88195 * 6 5 3 8 8 C 1.46895 * 110.99551 * 185.79855 * 7 6 5 9 9 C 1.53000 * 109.46942 * 52.10722 * 8 7 6 10 10 O 1.42894 * 109.47378 * 62.29486 * 9 8 7 11 11 C 1.42901 * 114.00228 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47248 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99992 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00004 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99870 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99909 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47004 * 89.99999 * 16 14 12 18 18 H 1.48498 * 109.46887 * 209.99937 * 16 14 12 19 19 H 1.48499 * 109.47208 * 330.00142 * 16 14 12 20 20 C 1.46850 * 111.23078 * 61.68271 * 7 6 5 21 21 C 1.53038 * 109.52409 * 298.27791 * 20 7 6 22 22 H 1.08998 * 109.47558 * 59.99294 * 1 2 3 23 23 H 1.08995 * 109.47540 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46662 * 299.99806 * 1 2 3 25 25 H 1.09001 * 109.46820 * 299.87415 * 4 3 2 26 26 H 1.09001 * 109.47146 * 59.87166 * 4 3 2 27 27 H 1.08993 * 109.47144 * 179.87251 * 4 3 2 28 28 H 1.08995 * 109.50006 * 57.69445 * 5 3 2 29 29 H 1.09009 * 109.50074 * 177.77208 * 5 3 2 30 30 H 1.09004 * 109.45889 * 60.86158 * 6 5 3 31 31 H 1.09004 * 109.46092 * 180.82419 * 6 5 3 32 32 H 1.09006 * 109.47069 * 172.10573 * 8 7 6 33 33 H 1.08995 * 109.47434 * 292.10219 * 8 7 6 34 34 H 1.09007 * 109.46833 * 182.29335 * 9 8 7 35 35 H 1.08998 * 109.46917 * 302.28899 * 9 8 7 36 36 H 1.08997 * 109.47175 * 299.99683 * 11 10 9 37 37 H 1.09005 * 109.46937 * 59.99495 * 11 10 9 38 38 H 0.97001 * 120.00329 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.46630 * 178.26205 * 20 7 6 40 40 H 1.08999 * 109.46066 * 58.29266 * 20 7 6 41 41 H 1.09004 * 109.50214 * 299.23994 * 21 20 7 42 42 H 1.08996 * 109.53934 * 179.13606 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5570 2.0670 -1.2472 5 6 3.5368 1.1858 -0.0006 6 6 3.9893 0.4761 1.2774 7 7 3.5400 1.2399 2.4484 8 6 4.0734 0.6629 3.6895 9 6 5.5901 0.5036 3.5672 10 8 6.1917 1.7882 3.3950 11 6 7.6147 1.7516 3.2694 12 6 8.1396 3.1531 3.0928 13 1 7.4550 3.9882 3.0775 14 6 9.4940 3.3692 2.9506 15 7 9.9520 4.5922 2.7960 16 14 10.6781 1.9248 2.9777 17 1 10.8667 1.4133 1.5963 18 1 11.9859 2.3671 3.5246 19 1 10.1231 0.8456 3.8335 20 6 2.0749 1.3276 2.4959 21 6 1.5661 2.0633 1.2542 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8787 1.5285 -2.1386 26 1 0.4703 2.1516 -1.2463 27 1 1.9990 3.0633 -1.2452 28 1 3.8563 0.6101 -0.8693 29 1 3.9798 2.1810 -0.0406 30 1 3.5577 -0.5243 1.3096 31 1 5.0769 0.4026 1.2864 32 1 3.8436 1.3236 4.5255 33 1 3.6183 -0.3124 3.8617 34 1 5.9806 0.0379 4.4722 35 1 5.8213 -0.1243 2.7067 36 1 8.0476 1.3117 4.1678 37 1 7.8875 1.1498 2.4024 38 1 10.9048 4.7443 2.6963 39 1 1.7725 1.8724 3.3902 40 1 1.6517 0.3235 2.5220 41 1 1.9781 3.0723 1.2347 42 1 0.4777 2.1151 1.2816 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339074441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:25 Heat of formation + Delta-G solvation = -87.245732 kcal Electronic energy + Delta-G solvation = -20293.172758 eV Core-core repulsion = 17273.600481 eV Total energy + Delta-G solvation = -3019.572277 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.03951 -37.61520 -36.14597 -33.28461 -32.50378 -30.99566 -29.83944 -27.94306 -27.01771 -26.36974 -23.31198 -22.45675 -21.78124 -20.63286 -19.53442 -16.82547 -16.53967 -15.90891 -15.57450 -15.47234 -15.40833 -14.81133 -14.35465 -14.17036 -14.03609 -13.44459 -12.98528 -12.79318 -12.67939 -12.52237 -12.28861 -12.18250 -11.77647 -11.64234 -11.50286 -11.19179 -11.01663 -10.85539 -10.75827 -10.58730 -10.49150 -9.94002 -9.79575 -9.54648 -9.10872 -8.76706 -8.38780 -7.95845 -6.06532 -4.04652 3.27659 3.34523 3.36260 3.68115 4.09807 4.39725 4.60891 4.70908 4.73392 4.86424 5.13847 5.17235 5.24810 5.26092 5.34741 5.37181 5.46306 5.48101 5.56621 5.60604 5.64302 5.69110 5.79500 5.85724 5.91082 5.96157 5.99261 6.07690 6.12741 6.26265 6.29374 6.38710 6.66253 7.05650 7.16670 7.34035 7.37461 7.66013 8.11280 8.74507 9.07133 9.53468 11.06697 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.031779 B = 0.004453 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.880802 B = 6286.097449 C = 6572.132696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.378 6.378 3 C 0.112 3.888 4 C -0.176 4.176 5 C -0.099 4.099 6 C 0.056 3.944 7 N -0.523 5.523 8 C 0.063 3.937 9 C 0.056 3.944 10 O -0.363 6.363 11 C 0.167 3.833 12 C -0.514 4.514 13 H 0.083 0.917 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.267 1.267 20 C 0.062 3.938 21 C -0.140 4.140 22 H 0.041 0.959 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.000 1.000 37 H -0.004 1.004 38 H 0.265 0.735 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.084 0.916 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.818 -9.980 -4.798 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.297 6.297 3 C 0.073 3.927 4 C -0.234 4.234 5 C -0.137 4.137 6 C -0.072 4.072 7 N -0.248 5.248 8 C -0.064 4.064 9 C -0.022 4.022 10 O -0.282 6.282 11 C 0.092 3.908 12 C -0.552 4.552 13 H 0.101 0.899 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.702 3.298 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.067 4.067 21 C -0.178 4.178 22 H 0.060 0.940 23 H 0.098 0.902 24 H 0.060 0.940 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.017 0.983 37 H 0.013 0.987 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.103 0.897 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.447 -9.383 -4.868 21.261 hybrid contribution 0.339 -1.531 0.079 1.570 sum -18.109 -10.914 -4.789 21.679 Atomic orbital electron populations 1.22736 0.82194 1.02178 1.00014 1.87967 1.18945 1.27822 1.94945 1.21613 0.94468 0.82866 0.93784 1.22387 1.01391 1.01355 0.98224 1.21602 0.91534 1.02810 0.97763 1.22086 1.01074 0.94398 0.89645 1.61828 1.08177 1.52631 1.02146 1.22086 0.94037 0.97455 0.92843 1.22440 0.92392 0.88485 0.98846 1.88031 1.21856 1.24722 1.93542 1.20587 0.77724 0.98562 0.93975 1.20900 0.92880 0.91753 1.49643 0.89891 1.24763 0.97731 0.95707 0.94786 1.69877 1.14157 1.19730 1.49814 0.86869 0.80885 0.83236 0.78855 1.19980 1.20852 1.19172 1.21939 0.88188 0.98708 0.97820 1.22168 1.00121 1.00883 0.94583 0.94004 0.90184 0.93957 0.91837 0.92480 0.91086 0.91049 0.89165 0.94807 0.89750 0.90039 0.94497 0.94149 0.94202 0.98253 0.98674 0.92456 0.91036 0.94996 0.89728 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.22 101.05 1.03 1.26 16 2 O -0.38 -4.56 9.21 -35.23 -0.32 -4.89 16 3 C 0.11 1.31 0.72 -90.49 -0.06 1.25 16 4 C -0.18 -1.73 8.27 37.16 0.31 -1.43 16 5 C -0.10 -1.35 5.10 -26.65 -0.14 -1.48 16 6 C 0.06 0.84 4.91 -3.83 -0.02 0.82 16 7 N -0.52 -8.18 4.67 -234.67 -1.10 -9.28 16 8 C 0.06 0.98 5.52 -3.83 -0.02 0.95 16 9 C 0.06 1.02 5.57 37.16 0.21 1.22 16 10 O -0.36 -8.65 10.23 -35.23 -0.36 -9.01 16 11 C 0.17 4.33 4.76 36.00 0.17 4.50 16 12 C -0.51 -15.54 9.99 -34.44 -0.34 -15.88 16 13 H 0.08 2.75 8.06 -52.49 -0.42 2.33 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 16 Si 0.87 21.69 27.47 -169.99 -4.67 17.02 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 20 C 0.06 0.79 5.33 -3.83 -0.02 0.77 16 21 C -0.14 -1.61 4.59 -26.65 -0.12 -1.73 16 22 H 0.04 0.33 6.42 -51.93 -0.33 -0.01 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.04 0.35 6.38 -51.93 -0.33 0.02 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.09 1.32 8.14 -51.92 -0.42 0.89 16 30 H 0.03 0.50 7.76 -51.93 -0.40 0.09 16 31 H 0.08 1.41 5.80 -51.93 -0.30 1.11 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.04 0.69 6.05 -51.93 -0.31 0.37 16 36 H 0.00 0.00 7.20 -51.93 -0.37 -0.38 16 37 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 38 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 39 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 40 H 0.03 0.41 7.76 -51.93 -0.40 0.00 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.07 0.64 6.44 -51.93 -0.33 0.30 16 LS Contribution 322.40 15.07 4.86 4.86 Total: -1.00 -32.60 322.40 -7.27 -39.87 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -7.34 Total: -3.61 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 0.89 Total: -7.72 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: -0.32 Total: -36.52 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.68 Total: -13.90 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.60 -7.27 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339074441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.381 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds