Wall clock time and date at job start Mon Mar 30 2020 04:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00197 * 2 1 4 4 C 1.53004 * 109.52494 * 300.13241 * 3 2 1 5 5 C 1.53119 * 109.52104 * 180.02562 * 3 2 1 6 6 C 1.53035 * 109.31013 * 297.72835 * 5 3 2 7 7 N 1.46847 * 109.52648 * 300.88195 * 6 5 3 8 8 C 1.46895 * 110.99551 * 185.79855 * 7 6 5 9 9 C 1.53000 * 109.46942 * 52.10722 * 8 7 6 10 10 O 1.42894 * 109.47378 * 62.29486 * 9 8 7 11 11 C 1.42901 * 114.00228 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47248 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99992 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00004 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99870 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99909 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47004 * 89.99999 * 16 14 12 18 18 H 1.48498 * 109.46887 * 209.99937 * 16 14 12 19 19 H 1.48499 * 109.47208 * 330.00142 * 16 14 12 20 20 C 1.46850 * 111.23078 * 61.68271 * 7 6 5 21 21 C 1.53038 * 109.52409 * 298.27791 * 20 7 6 22 22 H 1.08998 * 109.47558 * 59.99294 * 1 2 3 23 23 H 1.08995 * 109.47540 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46662 * 299.99806 * 1 2 3 25 25 H 1.09001 * 109.46820 * 299.87415 * 4 3 2 26 26 H 1.09001 * 109.47146 * 59.87166 * 4 3 2 27 27 H 1.08993 * 109.47144 * 179.87251 * 4 3 2 28 28 H 1.08995 * 109.50006 * 57.69445 * 5 3 2 29 29 H 1.09009 * 109.50074 * 177.77208 * 5 3 2 30 30 H 1.09004 * 109.45889 * 60.86158 * 6 5 3 31 31 H 1.09004 * 109.46092 * 180.82419 * 6 5 3 32 32 H 1.09006 * 109.47069 * 172.10573 * 8 7 6 33 33 H 1.08995 * 109.47434 * 292.10219 * 8 7 6 34 34 H 1.09007 * 109.46833 * 182.29335 * 9 8 7 35 35 H 1.08998 * 109.46917 * 302.28899 * 9 8 7 36 36 H 1.08997 * 109.47175 * 299.99683 * 11 10 9 37 37 H 1.09005 * 109.46937 * 59.99495 * 11 10 9 38 38 H 0.97001 * 120.00329 * 179.97438 * 15 14 12 39 39 H 1.08994 * 109.46630 * 178.26205 * 20 7 6 40 40 H 1.08999 * 109.46066 * 58.29266 * 20 7 6 41 41 H 1.09004 * 109.50214 * 299.23994 * 21 20 7 42 42 H 1.08996 * 109.53934 * 179.13606 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5570 2.0670 -1.2472 5 6 3.5368 1.1858 -0.0006 6 6 3.9893 0.4761 1.2774 7 7 3.5400 1.2399 2.4484 8 6 4.0734 0.6629 3.6895 9 6 5.5901 0.5036 3.5672 10 8 6.1917 1.7882 3.3950 11 6 7.6147 1.7516 3.2694 12 6 8.1396 3.1531 3.0928 13 1 7.4550 3.9882 3.0775 14 6 9.4940 3.3692 2.9506 15 7 9.9520 4.5922 2.7960 16 14 10.6781 1.9248 2.9777 17 1 10.8667 1.4133 1.5963 18 1 11.9859 2.3671 3.5246 19 1 10.1231 0.8456 3.8335 20 6 2.0749 1.3276 2.4959 21 6 1.5661 2.0633 1.2542 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8787 1.5285 -2.1386 26 1 0.4703 2.1516 -1.2463 27 1 1.9990 3.0633 -1.2452 28 1 3.8563 0.6101 -0.8693 29 1 3.9798 2.1810 -0.0406 30 1 3.5577 -0.5243 1.3096 31 1 5.0769 0.4026 1.2864 32 1 3.8436 1.3236 4.5255 33 1 3.6183 -0.3124 3.8617 34 1 5.9806 0.0379 4.4722 35 1 5.8213 -0.1243 2.7067 36 1 8.0476 1.3117 4.1678 37 1 7.8875 1.1498 2.4024 38 1 10.9048 4.7443 2.6963 39 1 1.7725 1.8724 3.3902 40 1 1.6517 0.3235 2.5220 41 1 1.9781 3.0723 1.2347 42 1 0.4777 2.1151 1.2816 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339074441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:25 Heat of formation + Delta-G solvation = -110.987892 kcal Electronic energy + Delta-G solvation = -20294.202295 eV Core-core repulsion = 17273.600481 eV Total energy + Delta-G solvation = -3020.601814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.01903 -38.99974 -37.55596 -34.91186 -34.14498 -32.07103 -31.16078 -29.72797 -27.92957 -27.49640 -24.41345 -23.95535 -23.52666 -21.82808 -20.50422 -19.01870 -17.72494 -17.36298 -16.91057 -16.47945 -16.34789 -16.30601 -15.78895 -15.72452 -15.20274 -14.70319 -14.37797 -14.15368 -13.96141 -13.87735 -13.44736 -13.11280 -13.04724 -12.89722 -12.77369 -12.59406 -12.46077 -12.19861 -12.04080 -11.91980 -11.78113 -11.59678 -11.31371 -10.97578 -10.89301 -10.38566 -10.27094 -9.10225 -8.35582 -6.42882 1.33318 1.36485 1.47351 2.30360 2.81744 2.96820 2.98483 3.17109 3.71064 3.77403 3.92165 4.07548 4.24251 4.27920 4.38087 4.45581 4.49256 4.50737 4.53867 4.57702 4.61932 4.66790 4.71375 4.74330 4.84277 4.88365 4.90809 4.94905 5.01434 5.05101 5.12866 5.19598 5.27029 5.30354 5.46218 5.95935 6.19954 6.26564 6.36017 6.61457 6.81440 7.21706 8.81814 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.031779 B = 0.004453 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.880802 B = 6286.097449 C = 6572.132696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.396 6.396 3 C 0.115 3.885 4 C -0.172 4.172 5 C -0.102 4.102 6 C 0.061 3.939 7 N -0.549 5.549 8 C 0.068 3.932 9 C 0.048 3.952 10 O -0.390 6.390 11 C 0.179 3.821 12 C -0.542 4.542 13 H 0.029 0.971 14 C 0.014 3.986 15 N -0.943 5.943 16 Si 0.955 3.045 17 H -0.260 1.260 18 H -0.273 1.273 19 H -0.246 1.246 20 C 0.063 3.937 21 C -0.137 4.137 22 H 0.053 0.947 23 H 0.092 0.908 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.049 0.951 36 H 0.010 0.990 37 H 0.006 0.994 38 H 0.273 0.727 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.580 -12.357 -4.887 23.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.316 6.316 3 C 0.076 3.924 4 C -0.230 4.230 5 C -0.139 4.139 6 C -0.067 4.067 7 N -0.274 5.274 8 C -0.060 4.060 9 C -0.029 4.029 10 O -0.309 6.309 11 C 0.103 3.897 12 C -0.579 4.579 13 H 0.047 0.953 14 C -0.184 4.184 15 N -0.583 5.583 16 Si 0.776 3.224 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.170 1.170 20 C -0.065 4.065 21 C -0.175 4.175 22 H 0.071 0.929 23 H 0.110 0.890 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.024 0.976 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.247 -11.764 -4.954 23.095 hybrid contribution 0.466 -0.727 0.109 0.871 sum -18.781 -12.491 -4.845 23.070 Atomic orbital electron populations 1.22932 0.80465 1.03372 1.00905 1.87931 1.20838 1.27677 1.95118 1.21495 0.93008 0.83264 0.94638 1.22346 1.02477 1.00878 0.97279 1.21578 0.93447 1.01582 0.97339 1.21979 0.99655 0.94811 0.90217 1.61817 1.10071 1.53253 1.02293 1.22060 0.92238 0.98922 0.92780 1.22772 0.93871 0.86263 0.99966 1.87984 1.20689 1.28437 1.93806 1.20286 0.79140 0.95700 0.94564 1.21148 0.93020 0.92719 1.51038 0.95305 1.25825 0.99704 0.99381 0.93517 1.70034 1.15171 1.22662 1.50404 0.85619 0.77806 0.79012 0.79962 1.18435 1.19756 1.16988 1.21984 0.86471 0.99284 0.98713 1.22165 1.01468 0.99861 0.94033 0.92865 0.88959 0.93238 0.91753 0.90736 0.91335 0.90515 0.91070 0.94289 0.92024 0.90351 0.91597 0.92485 0.93300 0.97270 0.97607 0.91835 0.90532 0.94337 0.91071 0.89209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.22 113.37 1.16 1.44 16 2 O -0.40 -8.76 9.21 -148.98 -1.37 -10.13 16 3 C 0.12 2.55 0.72 -10.71 -0.01 2.55 16 4 C -0.17 -3.14 8.27 71.98 0.60 -2.54 16 5 C -0.10 -2.76 5.10 30.65 0.16 -2.60 16 6 C 0.06 1.82 4.91 86.33 0.42 2.25 16 7 N -0.55 -16.88 4.67 -896.37 -4.18 -21.06 16 8 C 0.07 1.99 5.52 86.30 0.48 2.47 16 9 C 0.05 1.69 5.57 71.98 0.40 2.09 16 10 O -0.39 -18.78 10.23 -148.98 -1.52 -20.31 16 11 C 0.18 9.25 4.76 71.23 0.34 9.59 16 12 C -0.54 -33.84 9.99 25.60 0.26 -33.58 16 13 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 14 C 0.01 0.81 5.47 84.66 0.46 1.28 16 15 N -0.94 -60.32 13.96 21.45 0.30 -60.02 16 16 Si 0.95 44.13 27.47 68.60 1.88 46.02 16 17 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.25 -10.52 6.54 99.48 0.65 -9.86 16 20 C 0.06 1.53 5.33 86.33 0.46 1.99 16 21 C -0.14 -2.99 4.59 30.65 0.14 -2.85 16 22 H 0.05 0.67 6.42 -2.39 -0.02 0.66 16 23 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.05 0.66 6.38 -2.39 -0.02 0.65 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.09 6.54 -2.39 -0.02 1.07 16 27 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.04 1.11 7.76 -2.39 -0.02 1.09 16 31 H 0.06 2.08 5.80 -2.39 -0.01 2.07 16 32 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.06 1.80 8.14 -2.38 -0.02 1.79 16 35 H 0.05 1.63 6.05 -2.39 -0.01 1.62 16 36 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16 37 H 0.01 0.31 7.57 -2.38 -0.02 0.29 16 38 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 39 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 40 H 0.04 0.89 7.76 -2.39 -0.02 0.87 16 41 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.09 1.51 6.44 -2.39 -0.02 1.49 16 Total: -1.00 -72.07 322.40 0.88 -71.19 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.91 Total: 12.24 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: 4.86 Total: -17.92 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -3.88 Total: -81.08 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -2.90 Total: -30.44 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.02 kcal Total: -72.07 0.88 -71.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339074441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.802 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds