Wall clock time and date at job start Mon Mar 30 2020 05:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47047 * 2 1 4 4 C 1.52995 * 109.47414 * 120.00100 * 2 1 3 5 5 H 1.09004 * 109.50508 * 60.08922 * 4 2 1 6 6 C 1.53094 * 109.54445 * 180.19794 * 4 2 1 7 7 N 1.47014 * 109.25808 * 176.80675 * 6 4 2 8 8 C 1.46906 * 111.00158 * 177.60442 * 7 6 4 9 9 C 1.52998 * 109.47215 * 189.67898 * 8 7 6 10 10 O 1.42897 * 109.46795 * 65.00306 * 9 8 7 11 11 C 1.42905 * 113.99899 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47179 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47008 * 110.75409 * 301.38228 * 7 6 4 21 21 C 1.53094 * 109.25715 * 58.61518 * 20 7 6 22 22 O 1.43013 * 109.25935 * 303.15200 * 21 20 7 23 23 H 1.08995 * 109.47459 * 299.99453 * 1 2 3 24 24 H 1.09007 * 109.47227 * 60.00158 * 1 2 3 25 25 H 1.09005 * 109.47055 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47073 * 240.00407 * 2 1 3 27 27 H 1.09004 * 109.47467 * 300.00044 * 3 2 1 28 28 H 1.09001 * 109.46851 * 60.00271 * 3 2 1 29 29 H 1.08999 * 109.47243 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.50922 * 56.87060 * 6 4 2 31 31 H 1.09006 * 109.50894 * 296.73869 * 6 4 2 32 32 H 1.09000 * 109.46758 * 69.68121 * 8 7 6 33 33 H 1.08993 * 109.47047 * 309.68698 * 8 7 6 34 34 H 1.08995 * 109.47274 * 305.00344 * 9 8 7 35 35 H 1.09002 * 109.46559 * 184.99809 * 9 8 7 36 36 H 1.09007 * 109.46810 * 59.99780 * 11 10 9 37 37 H 1.09003 * 109.46936 * 300.00543 * 11 10 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.51067 * 178.54963 * 20 7 6 40 40 H 1.09001 * 109.50574 * 298.64087 * 20 7 6 41 41 H 1.09002 * 109.50886 * 63.09186 * 21 20 7 42 42 H 1.09002 * 109.50838 * 183.22037 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6783 -1.7495 1.2489 6 6 3.5709 -0.7179 1.2533 7 7 4.0539 -1.3441 2.4926 8 6 5.5212 -1.4124 2.5108 9 6 5.9770 -2.2773 3.6878 10 8 5.5384 -3.6226 3.4881 11 6 5.9146 -4.5181 4.5363 12 6 5.4036 -5.9008 4.2232 13 1 4.8475 -6.0781 3.3145 14 6 5.6459 -6.9396 5.0969 15 7 6.3235 -6.7238 6.2032 16 14 5.0118 -8.6533 4.7091 17 1 3.6512 -8.8188 5.2805 18 1 4.9564 -8.8393 3.2368 19 1 5.9239 -9.6644 5.3018 20 6 3.5451 -0.6275 3.6710 21 6 2.0145 -0.6317 3.6426 22 8 1.5637 -0.0477 2.4174 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4425 -0.0005 30 1 3.9328 0.3088 1.1994 31 1 3.9385 -1.2796 0.3945 32 1 5.9303 -0.4078 2.6183 33 1 5.8761 -1.8513 1.5784 34 1 5.5484 -1.8888 4.6116 35 1 7.0647 -2.2559 3.7545 36 1 5.4851 -4.1761 5.4780 37 1 7.0011 -4.5431 4.6204 38 1 6.4936 -7.4545 6.8180 39 1 3.8937 -1.1231 4.5771 40 1 3.9072 0.4006 3.6561 41 1 1.6519 -1.6573 3.7121 42 1 1.6332 -0.0526 4.4837 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339078373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:18 Heat of formation + Delta-G solvation = -99.668710 kcal Electronic energy + Delta-G solvation = -19992.567511 eV Core-core repulsion = 16972.456534 eV Total energy + Delta-G solvation = -3020.110977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85503 -37.10816 -35.61409 -34.96383 -32.66519 -30.18615 -29.87386 -27.35413 -27.04757 -25.70913 -23.97385 -22.31660 -21.98638 -20.34440 -19.73855 -16.56430 -16.33767 -16.24980 -15.64415 -15.30079 -15.12252 -14.59172 -14.48424 -14.28956 -14.02770 -13.49874 -13.28520 -13.04236 -12.76771 -12.19390 -12.08101 -11.85647 -11.78663 -11.59384 -11.22187 -11.09017 -10.90001 -10.77633 -10.77299 -10.75101 -10.47393 -10.20075 -9.98701 -9.46310 -9.05561 -8.76935 -8.14666 -8.07634 -6.07681 -4.08580 3.32666 3.37400 3.43187 3.76378 3.90292 4.37895 4.66760 4.76397 4.90372 4.94175 5.06215 5.13476 5.22026 5.28874 5.33220 5.39428 5.54311 5.57052 5.59532 5.64217 5.68672 5.75015 5.80684 5.84805 5.90981 5.95624 6.01351 6.05082 6.13038 6.21644 6.28047 6.31273 7.11803 7.13195 7.18550 7.27287 7.46799 7.84190 8.20357 8.65175 9.06159 9.56218 11.04043 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.027447 B = 0.004177 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.893302 B = 6702.258907 C = 7128.359001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.098 3.902 5 H 0.068 0.932 6 C 0.024 3.976 7 N -0.522 5.522 8 C 0.062 3.938 9 C 0.066 3.934 10 O -0.380 6.380 11 C 0.194 3.806 12 C -0.510 4.510 13 H 0.066 0.934 14 C 0.055 3.945 15 N -0.901 5.901 16 Si 0.907 3.093 17 H -0.279 1.279 18 H -0.272 1.272 19 H -0.286 1.286 20 C 0.017 3.983 21 C 0.065 3.935 22 O -0.381 6.381 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.039 0.961 36 H 0.003 0.997 37 H 0.002 0.998 38 H 0.263 0.737 39 H 0.090 0.910 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 16.133 -9.489 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.203 4.203 4 C 0.040 3.960 5 H 0.086 0.914 6 C -0.104 4.104 7 N -0.247 5.247 8 C -0.066 4.066 9 C -0.012 4.012 10 O -0.299 6.299 11 C 0.120 3.880 12 C -0.549 4.549 13 H 0.085 0.915 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.734 3.266 17 H -0.205 1.205 18 H -0.196 1.196 19 H -0.211 1.211 20 C -0.111 4.111 21 C -0.012 4.012 22 O -0.300 6.300 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.902 15.651 -9.481 19.932 hybrid contribution 0.564 -0.293 0.308 0.706 sum -7.338 15.358 -9.173 19.336 Atomic orbital electron populations 1.21748 0.94529 1.01840 1.01879 1.21135 0.96662 0.96787 0.96011 1.21831 1.00786 0.95791 1.01844 1.22163 0.92036 0.96144 0.85646 0.91378 1.22848 0.96113 0.97767 0.93716 1.62069 1.09769 1.51624 1.01264 1.22152 0.86698 0.97187 1.00525 1.22251 0.96794 0.86225 0.95907 1.87949 1.78225 1.15866 1.47901 1.20177 0.94351 0.88089 0.85405 1.21064 1.34866 0.92001 1.06942 0.91539 1.24949 0.95299 0.99471 0.94836 1.69968 1.40313 1.32649 1.11074 0.86347 0.78582 0.82930 0.78695 1.20482 1.19626 1.21141 1.22821 0.96449 0.96415 0.95418 1.22630 0.92739 0.99247 0.86558 1.87906 1.72798 1.55612 1.13662 0.91830 0.92971 0.92769 0.90106 0.93048 0.91900 0.92765 0.94105 0.89933 0.94365 0.90020 0.94614 0.94247 0.97967 0.98029 0.92737 0.89173 0.94669 0.91910 0.88731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.05 37.16 0.34 -1.00 16 2 C -0.09 -0.87 2.82 -90.62 -0.26 -1.12 16 3 C -0.15 -1.35 8.70 37.16 0.32 -1.03 16 4 C 0.10 1.22 2.54 -26.69 -0.07 1.15 16 5 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 6 C 0.02 0.31 4.66 -3.71 -0.02 0.29 16 7 N -0.52 -8.14 4.68 -234.32 -1.10 -9.24 16 8 C 0.06 0.96 5.34 -3.82 -0.02 0.94 16 9 C 0.07 1.25 6.00 37.16 0.22 1.47 16 10 O -0.38 -9.38 10.27 -35.23 -0.36 -9.74 16 11 C 0.19 5.43 5.69 36.00 0.20 5.63 16 12 C -0.51 -15.30 9.43 -34.44 -0.32 -15.63 16 13 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 16 Si 0.91 22.14 29.54 -169.99 -5.02 17.11 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.02 0.24 5.44 -3.72 -0.02 0.22 16 21 C 0.07 0.85 7.01 37.21 0.26 1.11 16 22 O -0.38 -5.04 9.13 -35.23 -0.32 -5.36 16 23 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 24 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16 29 H 0.05 0.50 6.36 -51.93 -0.33 0.17 16 30 H 0.04 0.50 6.27 -51.93 -0.33 0.17 16 31 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 32 H 0.04 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 34 H 0.04 0.66 6.29 -51.93 -0.33 0.33 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.00 0.07 8.14 -51.92 -0.42 -0.35 16 37 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 39 H 0.09 1.35 6.28 -51.93 -0.33 1.03 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -31.92 330.86 -8.09 -40.02 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -7.56 Total: -4.82 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 0.54 Total: -6.45 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.36 Total: -35.76 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.68 Total: -15.10 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.92 -8.09 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339078373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.651 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds