Wall clock time and date at job start Mon Mar 30 2020 05:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47047 * 2 1 4 4 C 1.52995 * 109.47414 * 120.00100 * 2 1 3 5 5 H 1.09004 * 109.50508 * 60.08922 * 4 2 1 6 6 C 1.53094 * 109.54445 * 180.19794 * 4 2 1 7 7 N 1.47014 * 109.25808 * 176.80675 * 6 4 2 8 8 C 1.46906 * 111.00158 * 177.60442 * 7 6 4 9 9 C 1.52998 * 109.47215 * 189.67898 * 8 7 6 10 10 O 1.42897 * 109.46795 * 65.00306 * 9 8 7 11 11 C 1.42905 * 113.99899 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47179 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47008 * 110.75409 * 301.38228 * 7 6 4 21 21 C 1.53094 * 109.25715 * 58.61518 * 20 7 6 22 22 O 1.43013 * 109.25935 * 303.15200 * 21 20 7 23 23 H 1.08995 * 109.47459 * 299.99453 * 1 2 3 24 24 H 1.09007 * 109.47227 * 60.00158 * 1 2 3 25 25 H 1.09005 * 109.47055 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47073 * 240.00407 * 2 1 3 27 27 H 1.09004 * 109.47467 * 300.00044 * 3 2 1 28 28 H 1.09001 * 109.46851 * 60.00271 * 3 2 1 29 29 H 1.08999 * 109.47243 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.50922 * 56.87060 * 6 4 2 31 31 H 1.09006 * 109.50894 * 296.73869 * 6 4 2 32 32 H 1.09000 * 109.46758 * 69.68121 * 8 7 6 33 33 H 1.08993 * 109.47047 * 309.68698 * 8 7 6 34 34 H 1.08995 * 109.47274 * 305.00344 * 9 8 7 35 35 H 1.09002 * 109.46559 * 184.99809 * 9 8 7 36 36 H 1.09007 * 109.46810 * 59.99780 * 11 10 9 37 37 H 1.09003 * 109.46936 * 300.00543 * 11 10 9 38 38 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.51067 * 178.54963 * 20 7 6 40 40 H 1.09001 * 109.50574 * 298.64087 * 20 7 6 41 41 H 1.09002 * 109.50886 * 63.09186 * 21 20 7 42 42 H 1.09002 * 109.50838 * 183.22037 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6783 -1.7495 1.2489 6 6 3.5709 -0.7179 1.2533 7 7 4.0539 -1.3441 2.4926 8 6 5.5212 -1.4124 2.5108 9 6 5.9770 -2.2773 3.6878 10 8 5.5384 -3.6226 3.4881 11 6 5.9146 -4.5181 4.5363 12 6 5.4036 -5.9008 4.2232 13 1 4.8475 -6.0781 3.3145 14 6 5.6459 -6.9396 5.0969 15 7 6.3235 -6.7238 6.2032 16 14 5.0118 -8.6533 4.7091 17 1 3.6512 -8.8188 5.2805 18 1 4.9564 -8.8393 3.2368 19 1 5.9239 -9.6644 5.3018 20 6 3.5451 -0.6275 3.6710 21 6 2.0145 -0.6317 3.6426 22 8 1.5637 -0.0477 2.4174 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1299 1.4425 -0.0005 30 1 3.9328 0.3088 1.1994 31 1 3.9385 -1.2796 0.3945 32 1 5.9303 -0.4078 2.6183 33 1 5.8761 -1.8513 1.5784 34 1 5.5484 -1.8888 4.6116 35 1 7.0647 -2.2559 3.7545 36 1 5.4851 -4.1761 5.4780 37 1 7.0011 -4.5431 4.6204 38 1 6.4936 -7.4545 6.8180 39 1 3.8937 -1.1231 4.5771 40 1 3.9072 0.4006 3.6561 41 1 1.6519 -1.6573 3.7121 42 1 1.6332 -0.0526 4.4837 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339078373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:18 Heat of formation + Delta-G solvation = -121.535959 kcal Electronic energy + Delta-G solvation = -19993.515746 eV Core-core repulsion = 16972.456534 eV Total energy + Delta-G solvation = -3021.059212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91059 -38.73708 -36.91675 -35.96044 -34.87260 -31.34838 -31.16189 -29.14081 -28.02973 -26.99986 -25.02241 -24.48398 -23.23464 -21.49933 -20.66500 -18.62687 -17.66794 -17.46245 -17.28219 -16.57491 -16.25783 -16.18607 -15.90540 -15.69444 -15.06470 -14.79461 -14.73944 -14.26115 -13.79957 -13.66596 -13.40317 -13.06301 -12.98678 -12.76714 -12.74917 -12.59163 -12.53377 -12.23408 -12.07344 -11.85549 -11.67654 -11.56949 -11.29352 -11.16482 -10.85717 -10.54974 -10.18959 -9.24326 -8.32108 -6.44062 1.39504 1.42456 1.54569 2.34957 2.72288 2.85186 3.01617 3.21238 3.76737 3.89254 3.96075 4.06979 4.13442 4.17997 4.23720 4.26908 4.42711 4.49363 4.53394 4.62638 4.64826 4.72599 4.80389 4.80887 4.88023 4.91980 4.94463 4.96993 5.07074 5.09856 5.18283 5.23339 5.45144 5.53364 5.55317 5.96369 6.01154 6.04258 6.23419 6.56373 6.85583 7.28230 8.80321 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.027447 B = 0.004177 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.893302 B = 6702.258907 C = 7128.359001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.141 4.141 4 C 0.096 3.904 5 H 0.048 0.952 6 C 0.028 3.972 7 N -0.552 5.552 8 C 0.071 3.929 9 C 0.057 3.943 10 O -0.395 6.395 11 C 0.210 3.790 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.007 3.993 15 N -0.931 5.931 16 Si 0.982 3.018 17 H -0.268 1.268 18 H -0.265 1.265 19 H -0.273 1.273 20 C 0.019 3.981 21 C 0.067 3.933 22 O -0.383 6.383 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.048 0.952 36 H -0.018 1.018 37 H -0.016 1.016 38 H 0.271 0.729 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.043 0.957 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.107 16.524 -10.648 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.103 4.103 3 C -0.198 4.198 4 C 0.038 3.962 5 H 0.066 0.934 6 C -0.100 4.100 7 N -0.277 5.277 8 C -0.057 4.057 9 C -0.021 4.021 10 O -0.315 6.315 11 C 0.135 3.865 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.191 4.191 15 N -0.571 5.571 16 Si 0.805 3.195 17 H -0.193 1.193 18 H -0.189 1.189 19 H -0.198 1.198 20 C -0.108 4.108 21 C -0.010 4.010 22 O -0.302 6.302 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.000 1.000 37 H 0.002 0.998 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.434 16.072 -10.647 21.043 hybrid contribution 0.745 -0.335 0.683 1.065 sum -7.689 15.737 -9.964 20.151 Atomic orbital electron populations 1.21726 0.94157 1.01688 1.02181 1.21173 0.96970 0.97173 0.95028 1.21788 1.00817 0.95092 1.02078 1.22249 0.91865 0.95567 0.86497 0.93405 1.22868 0.96255 0.98270 0.92605 1.62021 1.09820 1.53172 1.02727 1.22060 0.87124 0.97780 0.98700 1.22599 0.97523 0.83882 0.98048 1.87902 1.78604 1.18222 1.46777 1.19785 0.92815 0.88514 0.85420 1.21376 1.36095 0.93539 1.07371 0.92259 1.25952 0.94914 1.04022 0.94263 1.70070 1.40688 1.34431 1.11870 0.85196 0.78402 0.77028 0.78864 1.19329 1.18906 1.19785 1.22789 0.96956 0.96759 0.94344 1.22656 0.92229 0.98700 0.87460 1.87914 1.72892 1.55549 1.13843 0.92944 0.91214 0.93182 0.88822 0.91415 0.93055 0.92619 0.92783 0.89552 0.91238 0.89996 0.94304 0.93348 1.00020 0.99843 0.92054 0.90747 0.93171 0.93878 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.05 71.98 0.65 -1.78 16 2 C -0.08 -1.54 2.82 -10.80 -0.03 -1.57 16 3 C -0.14 -2.29 8.70 71.98 0.63 -1.66 16 4 C 0.10 2.31 2.54 30.62 0.08 2.39 16 5 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 6 C 0.03 0.68 4.66 86.31 0.40 1.08 16 7 N -0.55 -16.81 4.68 -895.24 -4.19 -21.00 16 8 C 0.07 2.11 5.34 86.30 0.46 2.57 16 9 C 0.06 2.15 6.00 71.98 0.43 2.58 16 10 O -0.40 -19.97 10.27 -148.98 -1.53 -21.50 16 11 C 0.21 12.12 5.69 71.23 0.41 12.53 16 12 C -0.55 -33.40 9.43 25.60 0.24 -33.16 16 13 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 14 C 0.01 0.40 5.46 84.66 0.46 0.86 16 15 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 16 Si 0.98 45.14 29.54 68.60 2.03 47.16 16 17 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 20 C 0.02 0.54 5.44 86.31 0.47 1.00 16 21 C 0.07 1.71 7.01 72.01 0.50 2.21 16 22 O -0.38 -9.81 9.13 -148.98 -1.36 -11.17 16 23 H 0.05 1.02 7.68 -2.39 -0.02 1.00 16 24 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.96 7.68 -2.39 -0.02 0.94 16 29 H 0.05 0.89 6.36 -2.39 -0.02 0.87 16 30 H 0.05 1.19 6.27 -2.39 -0.01 1.18 16 31 H 0.09 2.03 8.09 -2.38 -0.02 2.01 16 32 H 0.07 1.65 8.12 -2.39 -0.02 1.64 16 33 H 0.08 2.43 8.04 -2.39 -0.02 2.41 16 34 H 0.04 1.44 6.29 -2.39 -0.02 1.43 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 36 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 37 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 38 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 39 H 0.07 2.25 6.28 -2.39 -0.01 2.24 16 40 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -68.55 330.86 0.90 -67.65 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.96 Total: 8.28 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 4.70 Total: -12.94 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -3.90 Total: -77.48 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -2.89 Total: -32.67 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.55 0.90 -67.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339078373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.884 kcal (2) G-P(sol) polarization free energy of solvation -68.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds