Wall clock time and date at job start Mon Mar 30 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.50266 * 2 1 4 4 C 1.53036 * 109.50188 * 120.07598 * 2 1 3 5 5 N 1.46850 * 109.52457 * 60.75951 * 4 2 1 6 6 C 1.46896 * 110.99729 * 185.83763 * 5 4 2 7 7 C 1.52996 * 109.47037 * 75.81199 * 6 5 4 8 8 O 1.42902 * 109.47771 * 65.02442 * 7 6 5 9 9 C 1.42900 * 114.00292 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46933 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99939 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99684 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00058 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99805 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47175 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47351 * 119.99905 * 14 12 10 17 17 H 1.48498 * 109.47099 * 240.00391 * 14 12 10 18 18 C 1.46850 * 111.19494 * 61.74242 * 5 4 2 19 19 C 1.53033 * 109.52220 * 298.25807 * 18 5 4 20 20 C 1.53112 * 109.50154 * 239.87762 * 2 1 3 21 21 H 1.09008 * 109.52166 * 177.80837 * 20 2 1 22 22 O 1.42906 * 109.52138 * 57.68648 * 20 2 1 23 23 H 1.09001 * 109.47477 * 299.92683 * 1 2 3 24 24 H 1.08999 * 109.47409 * 59.92320 * 1 2 3 25 25 H 1.08996 * 109.47423 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47110 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46849 * 300.08107 * 3 2 1 28 28 H 1.09000 * 109.47068 * 60.07484 * 3 2 1 29 29 H 1.09006 * 109.46452 * 300.74410 * 4 2 1 30 30 H 1.08997 * 109.45680 * 180.77316 * 4 2 1 31 31 H 1.08996 * 109.47567 * 315.80412 * 6 5 4 32 32 H 1.09008 * 109.46522 * 195.80699 * 6 5 4 33 33 H 1.09002 * 109.47055 * 305.02370 * 7 6 5 34 34 H 1.08999 * 109.47074 * 185.02295 * 7 6 5 35 35 H 1.08997 * 109.47246 * 59.99805 * 9 8 7 36 36 H 1.09002 * 109.46904 * 299.99548 * 9 8 7 37 37 H 0.97002 * 119.99904 * 179.97438 * 13 12 10 38 38 H 1.09005 * 109.45953 * 58.27109 * 18 5 4 39 39 H 1.08996 * 109.46310 * 178.24009 * 18 5 4 40 40 H 1.09000 * 109.50656 * 299.23759 * 19 18 5 41 41 H 1.09005 * 109.50468 * 179.12150 * 19 18 5 42 42 H 0.96705 * 113.99668 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0409 -0.7229 1.2483 5 7 1.5674 -2.1130 1.2388 6 6 1.9222 -2.7985 2.4886 7 6 0.9893 -2.3328 3.6082 8 8 -0.3474 -2.7460 3.3174 9 6 -1.3037 -2.3586 4.3061 10 6 -2.6714 -2.8430 3.8990 11 1 -2.7978 -3.3915 2.9773 12 6 -3.7614 -2.5860 4.7034 13 7 -3.6073 -1.9186 5.8260 14 14 -5.4568 -3.1859 4.1985 15 1 -5.3618 -3.9052 2.9028 16 1 -5.9865 -4.1049 5.2377 17 1 -6.3700 -2.0239 4.0531 18 6 2.0845 -2.8420 0.0735 19 6 1.5749 -2.1823 -1.2098 20 6 2.0411 -0.7243 -1.2484 21 1 3.1305 -0.6906 -1.2686 22 8 1.5219 -0.0862 -2.4169 23 1 -0.3634 0.5127 0.8906 24 1 -0.3634 0.5150 -0.8893 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1308 1.4416 -0.0005 27 1 1.6765 1.9567 -0.8893 28 1 1.6788 1.9559 0.8907 29 1 1.6669 -0.2180 2.1391 30 1 3.1308 -0.7105 1.2546 31 1 2.9530 -2.5623 2.7526 32 1 1.8192 -3.8754 2.3541 33 1 1.0256 -1.2460 3.6828 34 1 1.3080 -2.7727 4.5532 35 1 -1.3149 -1.2723 4.3947 36 1 -1.0327 -2.7987 5.2657 37 1 -4.3742 -1.7375 6.3917 38 1 3.1743 -2.8195 0.0854 39 1 1.7423 -3.8761 0.1109 40 1 0.4856 -2.2166 -1.2289 41 1 1.9715 -2.7142 -2.0747 42 1 1.8060 -0.4937 -3.2466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339112395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:44 Heat of formation + Delta-G solvation = -105.762219 kcal Electronic energy + Delta-G solvation = -20439.163828 eV Core-core repulsion = 17418.788616 eV Total energy + Delta-G solvation = -3020.375212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.95405 -37.07611 -35.92754 -34.10340 -32.68446 -31.72492 -28.61879 -27.00089 -26.72910 -26.31111 -23.82528 -22.24791 -21.75538 -20.81536 -18.49886 -17.31967 -16.33629 -16.08588 -15.58689 -15.09607 -14.66508 -14.49692 -14.38291 -14.16880 -13.58696 -13.21429 -13.07147 -12.96288 -12.41494 -12.15945 -11.93307 -11.76050 -11.59160 -11.39796 -11.28208 -11.09422 -10.80069 -10.75384 -10.69754 -10.42824 -10.33111 -10.07501 -9.90548 -9.78727 -8.99740 -8.72773 -8.07458 -8.00672 -6.04318 -4.04733 3.33573 3.39878 3.46923 3.96829 4.16071 4.41295 4.64853 4.72141 4.92265 5.00259 5.12627 5.26262 5.32430 5.37102 5.41029 5.47000 5.55771 5.65257 5.69476 5.77481 5.82355 5.95450 5.96988 6.05628 6.11776 6.16659 6.20191 6.27412 6.33854 6.45308 6.50248 6.88683 7.18452 7.29100 7.30190 7.52183 7.58621 7.88053 8.24822 8.70602 9.10714 9.59996 11.07508 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023709 B = 0.004934 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.726980 B = 5673.351048 C = 6005.392002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.051 4.051 3 C -0.138 4.138 4 C 0.066 3.934 5 N -0.521 5.521 6 C 0.062 3.938 7 C 0.069 3.931 8 O -0.379 6.379 9 C 0.195 3.805 10 C -0.507 4.507 11 H 0.067 0.933 12 C 0.055 3.945 13 N -0.901 5.901 14 Si 0.905 3.095 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.061 3.939 19 C -0.151 4.151 20 C 0.116 3.884 21 H 0.045 0.955 22 O -0.561 6.561 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.027 0.973 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.003 0.997 36 H 0.001 0.999 37 H 0.262 0.738 38 H 0.025 0.975 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.851 2.288 -12.884 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.062 4.062 5 N -0.245 5.245 6 C -0.066 4.066 7 C -0.009 4.009 8 O -0.298 6.298 9 C 0.120 3.880 10 C -0.546 4.546 11 H 0.085 0.915 12 C -0.146 4.146 13 N -0.540 5.540 14 Si 0.733 3.267 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.067 4.067 19 C -0.189 4.189 20 C 0.057 3.943 21 H 0.063 0.937 22 O -0.365 6.365 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 13.904 2.635 -12.470 18.862 hybrid contribution 0.376 -0.497 -0.103 0.631 sum 14.279 2.138 -12.574 19.146 Atomic orbital electron populations 1.21693 0.92442 1.03463 1.00936 1.20541 0.98079 0.94520 0.92026 1.21794 0.99968 0.95454 1.02320 1.22195 0.96193 0.89487 0.98304 1.61739 1.59774 1.01319 1.01680 1.22132 0.95561 0.99395 0.89515 1.22207 0.86172 0.97603 0.94905 1.87934 1.14423 1.78586 1.48885 1.20161 0.86874 0.94377 0.86585 1.21099 0.90928 1.35250 1.07291 0.91527 1.24939 0.99446 0.95351 0.94846 1.69975 1.30895 1.40621 1.12547 0.86317 0.83285 0.78466 0.78647 1.19479 1.20947 1.20900 1.21999 0.96194 0.98270 0.90228 1.22363 1.03801 0.95719 0.97042 1.21844 0.95433 0.91232 0.85800 0.93669 1.86546 1.75735 1.58605 1.15641 0.92915 0.93007 0.90775 0.93452 0.91732 0.92497 0.89871 0.95527 0.94256 0.90234 0.94736 0.94509 0.97964 0.98143 0.92844 0.95642 0.90336 0.89413 0.91806 0.78224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.86 37.16 0.29 -1.70 16 2 C -0.05 -0.67 0.60 -154.43 -0.09 -0.76 16 3 C -0.14 -1.61 8.36 37.16 0.31 -1.30 16 4 C 0.07 0.90 4.01 -3.83 -0.02 0.89 16 5 N -0.52 -7.80 3.82 -234.67 -0.90 -8.70 16 6 C 0.06 0.93 5.39 -3.83 -0.02 0.91 16 7 C 0.07 1.31 6.13 37.16 0.23 1.54 16 8 O -0.38 -9.33 10.27 -35.23 -0.36 -9.69 16 9 C 0.19 5.46 5.69 36.01 0.20 5.66 16 10 C -0.51 -15.26 9.43 -34.44 -0.32 -15.58 16 11 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 14 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 15 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 C 0.06 0.75 5.43 -3.83 -0.02 0.73 16 19 C -0.15 -1.71 5.37 -26.65 -0.14 -1.86 16 20 C 0.12 1.31 2.63 -26.61 -0.07 1.24 16 21 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 22 O -0.56 -6.15 12.01 -35.23 -0.42 -6.57 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.78 7.64 -51.93 -0.40 0.38 16 25 H 0.07 1.29 6.01 -51.93 -0.31 0.98 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.77 7.76 -51.93 -0.40 0.37 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.23 6.65 -51.93 -0.35 0.89 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.50 8.00 -51.93 -0.42 0.08 16 32 H 0.08 1.19 7.79 -51.92 -0.40 0.78 16 33 H 0.03 0.64 6.70 -51.93 -0.35 0.30 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 36 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.97 7.93 -51.93 -0.41 0.56 16 40 H 0.09 1.19 6.58 -51.93 -0.34 0.85 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.37 2.48 9.09 45.56 0.41 2.89 16 LS Contribution 328.28 15.07 4.95 4.95 Total: -1.00 -32.67 328.28 -7.50 -40.18 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -6.74 Total: -2.03 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 0.25 Total: -8.71 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.16 Total: -35.40 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.79 Total: -16.26 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.67 -7.50 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339112395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.584 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds