Wall clock time and date at job start Mon Mar 30 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.50266 * 2 1 4 4 C 1.53036 * 109.50188 * 120.07598 * 2 1 3 5 5 N 1.46850 * 109.52457 * 60.75951 * 4 2 1 6 6 C 1.46896 * 110.99729 * 185.83763 * 5 4 2 7 7 C 1.52996 * 109.47037 * 75.81199 * 6 5 4 8 8 O 1.42902 * 109.47771 * 65.02442 * 7 6 5 9 9 C 1.42900 * 114.00292 * 180.02562 * 8 7 6 10 10 C 1.50702 * 109.46933 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99939 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99684 * 179.97438 * 10 9 8 13 13 N 1.31508 * 120.00058 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99805 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47175 * 359.97438 * 14 12 10 16 16 H 1.48502 * 109.47351 * 119.99905 * 14 12 10 17 17 H 1.48498 * 109.47099 * 240.00391 * 14 12 10 18 18 C 1.46850 * 111.19494 * 61.74242 * 5 4 2 19 19 C 1.53033 * 109.52220 * 298.25807 * 18 5 4 20 20 C 1.53112 * 109.50154 * 239.87762 * 2 1 3 21 21 H 1.09008 * 109.52166 * 177.80837 * 20 2 1 22 22 O 1.42906 * 109.52138 * 57.68648 * 20 2 1 23 23 H 1.09001 * 109.47477 * 299.92683 * 1 2 3 24 24 H 1.08999 * 109.47409 * 59.92320 * 1 2 3 25 25 H 1.08996 * 109.47423 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47110 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46849 * 300.08107 * 3 2 1 28 28 H 1.09000 * 109.47068 * 60.07484 * 3 2 1 29 29 H 1.09006 * 109.46452 * 300.74410 * 4 2 1 30 30 H 1.08997 * 109.45680 * 180.77316 * 4 2 1 31 31 H 1.08996 * 109.47567 * 315.80412 * 6 5 4 32 32 H 1.09008 * 109.46522 * 195.80699 * 6 5 4 33 33 H 1.09002 * 109.47055 * 305.02370 * 7 6 5 34 34 H 1.08999 * 109.47074 * 185.02295 * 7 6 5 35 35 H 1.08997 * 109.47246 * 59.99805 * 9 8 7 36 36 H 1.09002 * 109.46904 * 299.99548 * 9 8 7 37 37 H 0.97002 * 119.99904 * 179.97438 * 13 12 10 38 38 H 1.09005 * 109.45953 * 58.27109 * 18 5 4 39 39 H 1.08996 * 109.46310 * 178.24009 * 18 5 4 40 40 H 1.09000 * 109.50656 * 299.23759 * 19 18 5 41 41 H 1.09005 * 109.50468 * 179.12150 * 19 18 5 42 42 H 0.96705 * 113.99668 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0409 -0.7229 1.2483 5 7 1.5674 -2.1130 1.2388 6 6 1.9222 -2.7985 2.4886 7 6 0.9893 -2.3328 3.6082 8 8 -0.3474 -2.7460 3.3174 9 6 -1.3037 -2.3586 4.3061 10 6 -2.6714 -2.8430 3.8990 11 1 -2.7978 -3.3915 2.9773 12 6 -3.7614 -2.5860 4.7034 13 7 -3.6073 -1.9186 5.8260 14 14 -5.4568 -3.1859 4.1985 15 1 -5.3618 -3.9052 2.9028 16 1 -5.9865 -4.1049 5.2377 17 1 -6.3700 -2.0239 4.0531 18 6 2.0845 -2.8420 0.0735 19 6 1.5749 -2.1823 -1.2098 20 6 2.0411 -0.7243 -1.2484 21 1 3.1305 -0.6906 -1.2686 22 8 1.5219 -0.0862 -2.4169 23 1 -0.3634 0.5127 0.8906 24 1 -0.3634 0.5150 -0.8893 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1308 1.4416 -0.0005 27 1 1.6765 1.9567 -0.8893 28 1 1.6788 1.9559 0.8907 29 1 1.6669 -0.2180 2.1391 30 1 3.1308 -0.7105 1.2546 31 1 2.9530 -2.5623 2.7526 32 1 1.8192 -3.8754 2.3541 33 1 1.0256 -1.2460 3.6828 34 1 1.3080 -2.7727 4.5532 35 1 -1.3149 -1.2723 4.3947 36 1 -1.0327 -2.7987 5.2657 37 1 -4.3742 -1.7375 6.3917 38 1 3.1743 -2.8195 0.0854 39 1 1.7423 -3.8761 0.1109 40 1 0.4856 -2.2166 -1.2289 41 1 1.9715 -2.7142 -2.0747 42 1 1.8060 -0.4937 -3.2466 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339112395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:44 Heat of formation + Delta-G solvation = -130.077092 kcal Electronic energy + Delta-G solvation = -20440.218200 eV Core-core repulsion = 17418.788616 eV Total energy + Delta-G solvation = -3021.429584 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.96553 -38.64185 -37.20667 -35.23742 -34.80811 -32.84584 -30.19931 -28.62874 -28.12410 -27.41015 -24.94904 -24.43865 -22.82776 -22.05167 -19.50683 -18.60954 -18.17818 -17.48969 -17.12547 -16.57032 -16.12393 -15.89821 -15.66528 -15.50275 -14.84629 -14.73891 -14.22592 -14.01676 -13.77672 -13.74150 -13.08001 -13.03431 -12.92907 -12.83305 -12.72229 -12.62755 -12.56246 -12.16818 -12.14956 -11.87605 -11.68529 -11.42998 -11.22687 -11.02203 -10.84451 -10.65950 -10.15073 -9.08372 -8.31197 -6.42679 1.39004 1.40782 1.55542 2.35485 2.90706 3.02486 3.27554 3.34170 3.68308 3.79106 4.02785 4.15120 4.25798 4.27653 4.32952 4.42489 4.43989 4.57472 4.59628 4.67733 4.73569 4.81350 4.85775 4.86237 4.90043 4.99621 5.00694 5.07614 5.14624 5.20841 5.27080 5.32573 5.41308 5.56789 5.61412 5.99084 6.18655 6.27269 6.59219 6.89046 6.98368 7.29705 8.81550 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023709 B = 0.004934 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.726980 B = 5673.351048 C = 6005.392002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.054 4.054 3 C -0.132 4.132 4 C 0.069 3.931 5 N -0.551 5.551 6 C 0.071 3.929 7 C 0.059 3.941 8 O -0.393 6.393 9 C 0.211 3.789 10 C -0.542 4.542 11 H 0.059 0.941 12 C 0.006 3.994 13 N -0.932 5.932 14 Si 0.981 3.019 15 H -0.265 1.265 16 H -0.269 1.269 17 H -0.272 1.272 18 C 0.062 3.938 19 C -0.147 4.147 20 C 0.123 3.877 21 H 0.068 0.932 22 O -0.575 6.575 23 H 0.029 0.971 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.032 0.968 34 H 0.045 0.955 35 H -0.022 1.022 36 H -0.017 1.017 37 H 0.270 0.730 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.916 1.788 -14.325 21.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.055 4.055 3 C -0.190 4.190 4 C -0.059 4.059 5 N -0.276 5.276 6 C -0.057 4.057 7 C -0.018 4.018 8 O -0.313 6.313 9 C 0.136 3.864 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.192 4.192 13 N -0.571 5.571 14 Si 0.804 3.196 15 H -0.189 1.189 16 H -0.194 1.194 17 H -0.197 1.197 18 C -0.066 4.066 19 C -0.185 4.185 20 C 0.064 3.936 21 H 0.086 0.914 22 O -0.383 6.383 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.050 0.950 34 H 0.063 0.937 35 H -0.004 1.004 36 H 0.001 0.999 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 15.000 2.132 -13.931 20.582 hybrid contribution 0.099 -0.306 0.343 0.470 sum 15.099 1.825 -13.588 20.395 Atomic orbital electron populations 1.21577 0.95037 1.01387 0.99708 1.20563 0.95861 0.95793 0.93247 1.21737 1.01157 0.94272 1.01839 1.22139 0.97408 0.88694 0.97617 1.61643 1.61373 1.02195 1.02426 1.22029 0.95853 0.99287 0.88486 1.22580 0.84091 0.97741 0.97424 1.87891 1.16589 1.78768 1.48021 1.19754 0.87609 0.92518 0.86559 1.21389 0.92472 1.36470 1.07628 0.92322 1.25943 1.03893 0.94888 0.94491 1.70078 1.32668 1.40954 1.13448 0.85164 0.77399 0.78362 0.78656 1.18943 1.19431 1.19722 1.22042 0.97522 0.97696 0.89329 1.22337 1.02004 0.96342 0.97823 1.21731 0.96345 0.90504 0.85040 0.91444 1.86503 1.76174 1.59048 1.16585 0.95219 0.92996 0.93207 0.91413 0.92081 0.93148 0.92065 0.93086 0.90835 0.90113 0.95000 0.93673 1.00381 0.99924 0.92112 0.93191 0.90791 0.92394 0.88803 0.75911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 7.86 71.98 0.57 -3.29 16 2 C -0.05 -1.36 0.60 -52.13 -0.03 -1.39 16 3 C -0.13 -2.91 8.36 71.98 0.60 -2.31 16 4 C 0.07 1.81 4.01 86.32 0.35 2.15 16 5 N -0.55 -16.03 3.82 -896.36 -3.42 -19.45 16 6 C 0.07 2.06 5.39 86.30 0.47 2.52 16 7 C 0.06 2.27 6.13 71.98 0.44 2.71 16 8 O -0.39 -20.06 10.27 -148.98 -1.53 -21.59 16 9 C 0.21 12.37 5.69 71.24 0.41 12.78 16 10 C -0.54 -33.54 9.43 25.60 0.24 -33.29 16 11 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 12 C 0.01 0.36 5.46 84.66 0.46 0.82 16 13 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 14 Si 0.98 45.81 29.54 68.60 2.03 47.84 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 18 C 0.06 1.38 5.43 86.32 0.47 1.85 16 19 C -0.15 -3.04 5.37 30.64 0.16 -2.87 16 20 C 0.12 2.47 2.63 30.67 0.08 2.55 16 21 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 22 O -0.58 -11.32 12.01 -148.98 -1.79 -13.11 16 23 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 1.61 7.64 -2.39 -0.02 1.59 16 25 H 0.05 1.82 6.01 -2.39 -0.01 1.81 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.38 7.76 -2.39 -0.02 1.36 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.84 6.65 -2.38 -0.02 1.82 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 1.65 8.00 -2.39 -0.02 1.63 16 32 H 0.08 2.31 7.79 -2.38 -0.02 2.29 16 33 H 0.03 1.23 6.70 -2.39 -0.02 1.22 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 36 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.07 1.71 7.93 -2.39 -0.02 1.69 16 40 H 0.06 1.56 6.58 -2.39 -0.02 1.54 16 41 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.39 4.08 9.09 -74.05 -0.67 3.41 16 Total: -1.00 -71.96 328.28 0.09 -71.88 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 0.31 Total: 9.47 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 4.21 Total: -17.78 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -3.14 Total: -76.70 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -3.32 Total: -34.70 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -71.96 0.09 -71.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339112395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.202 kcal (2) G-P(sol) polarization free energy of solvation -71.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds