Wall clock time and date at job start Mon Mar 30 2020 04:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46997 * 2 1 4 4 C 1.52998 * 109.54264 * 305.11189 * 3 2 1 5 5 C 1.53101 * 109.50791 * 185.00203 * 3 2 1 6 6 N 1.47008 * 109.26086 * 183.21838 * 5 3 2 7 7 C 1.46900 * 110.99941 * 182.38970 * 6 5 3 8 8 C 1.53004 * 109.46928 * 75.77376 * 7 6 5 9 9 O 1.42906 * 109.47072 * 65.06488 * 8 7 6 10 10 C 1.42906 * 113.99589 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46855 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99793 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99738 * 179.72151 * 11 10 9 14 14 N 1.31512 * 120.00385 * 0.28044 * 13 11 10 15 15 Si 1.86805 * 119.99723 * 180.27828 * 13 11 10 16 16 H 1.48496 * 109.47268 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47200 * 120.00215 * 15 13 11 18 18 H 1.48501 * 109.47000 * 240.00193 * 15 13 11 19 19 C 1.47016 * 110.75196 * 58.61780 * 6 5 3 20 20 C 1.53101 * 109.25756 * 301.38165 * 19 6 5 21 21 O 1.43016 * 109.25827 * 56.84923 * 20 19 6 22 22 H 1.09004 * 109.46910 * 299.99613 * 1 2 3 23 23 H 1.08995 * 109.47518 * 59.99296 * 1 2 3 24 24 H 1.08995 * 109.47420 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46910 * 240.00387 * 2 1 3 26 26 H 1.08997 * 109.47456 * 120.00157 * 2 1 3 27 27 H 1.08996 * 109.47346 * 299.89078 * 4 3 2 28 28 H 1.08998 * 109.47085 * 59.89640 * 4 3 2 29 29 H 1.09006 * 109.46808 * 179.89058 * 4 3 2 30 30 H 1.09000 * 109.50559 * 63.27923 * 5 3 2 31 31 H 1.08997 * 109.50440 * 303.15710 * 5 3 2 32 32 H 1.08992 * 109.47651 * 315.76947 * 7 6 5 33 33 H 1.09002 * 109.46835 * 195.76877 * 7 6 5 34 34 H 1.09008 * 109.46849 * 305.06961 * 8 7 6 35 35 H 1.08997 * 109.47471 * 185.06677 * 8 7 6 36 36 H 1.08997 * 109.47371 * 59.99847 * 10 9 8 37 37 H 1.08998 * 109.47025 * 299.99977 * 10 9 8 38 38 H 0.96993 * 120.00145 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.50989 * 61.31657 * 19 6 5 40 40 H 1.09001 * 109.50677 * 181.44952 * 19 6 5 41 41 H 1.08997 * 109.50731 * 296.91960 * 20 19 6 42 42 H 1.08993 * 109.54178 * 176.80275 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4286 2.2015 -1.1795 5 6 3.5658 1.4454 -0.1258 6 7 4.0562 2.8290 -0.0477 7 6 5.5140 2.8814 -0.2213 8 6 5.8590 2.6851 -1.6989 9 8 5.3496 3.7840 -2.4571 10 6 5.6187 3.6980 -3.8580 11 6 5.0392 4.9015 -4.5556 12 1 4.5180 5.6568 -3.9861 13 6 5.1800 5.0416 -5.9200 14 7 5.8151 4.1221 -6.6134 15 14 4.4684 6.5373 -6.7837 16 1 3.8064 7.4163 -5.7866 17 1 5.5598 7.2860 -7.4570 18 1 3.4726 6.0983 -7.7942 19 6 3.6540 3.4534 1.2210 20 6 2.1272 3.4306 1.3333 21 8 1.6664 2.0811 1.2240 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.7168 1.7166 -2.1122 28 1 0.3424 2.1992 -1.0892 29 1 1.7912 3.2295 -1.1772 30 1 3.8528 1.0109 -1.0834 31 1 3.9989 0.8594 0.6848 32 1 5.9788 2.0914 0.3685 33 1 5.8850 3.8504 0.1128 34 1 5.4107 1.7580 -2.0566 35 1 6.9415 2.6339 -1.8156 36 1 5.1653 2.7921 -4.2601 37 1 6.6962 3.6676 -4.0197 38 1 5.9144 4.2209 -7.5732 39 1 4.0885 2.8996 2.0532 40 1 4.0053 4.4849 1.2465 41 1 1.6943 4.0290 0.5318 42 1 1.8264 3.8409 2.2972 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339113412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:31 Heat of formation + Delta-G solvation = -95.789830 kcal Electronic energy + Delta-G solvation = -20389.372334 eV Core-core repulsion = 17369.429558 eV Total energy + Delta-G solvation = -3019.942776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08003 -37.02182 -35.46109 -34.42400 -32.66332 -30.19119 -29.91498 -27.95068 -26.82805 -25.40980 -24.11814 -22.32085 -21.95637 -20.64062 -19.16935 -16.55769 -16.37518 -16.20390 -15.60537 -15.08306 -14.99553 -14.63394 -14.46477 -14.18665 -13.92722 -13.49563 -13.27737 -12.90126 -12.37962 -12.14132 -11.89014 -11.83063 -11.68652 -11.60748 -11.29033 -11.14978 -10.99521 -10.78183 -10.74789 -10.70576 -10.36647 -10.10301 -9.99246 -9.41420 -9.03282 -8.76505 -8.12791 -8.06772 -6.07321 -4.08057 3.31178 3.37607 3.44450 3.76252 3.92467 4.38333 4.71886 4.86290 4.93311 5.01929 5.09075 5.20843 5.26720 5.29363 5.37037 5.44519 5.59383 5.62939 5.65059 5.70883 5.74312 5.83216 5.89363 5.93237 5.98942 6.06092 6.10151 6.12015 6.21767 6.29985 6.31644 6.64171 7.13270 7.15756 7.19920 7.31665 7.48314 7.84784 8.21280 8.66620 9.07171 9.56820 11.04466 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.004906 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.098123 B = 5705.644420 C = 6082.792239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C 0.120 3.880 4 C -0.170 4.170 5 C 0.031 3.969 6 N -0.518 5.518 7 C 0.061 3.939 8 C 0.070 3.930 9 O -0.380 6.380 10 C 0.194 3.806 11 C -0.508 4.508 12 H 0.066 0.934 13 C 0.055 3.945 14 N -0.900 5.900 15 Si 0.906 3.094 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.020 3.980 20 C 0.062 3.938 21 O -0.379 6.379 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.038 0.962 36 H 0.002 0.998 37 H 0.001 0.999 38 H 0.262 0.738 39 H 0.034 0.966 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.507 -6.783 15.476 18.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C 0.081 3.919 4 C -0.227 4.227 5 C -0.097 4.097 6 N -0.243 5.243 7 C -0.067 4.067 8 C -0.008 4.008 9 O -0.299 6.299 10 C 0.120 3.880 11 C -0.547 4.547 12 H 0.085 0.915 13 C -0.146 4.146 14 N -0.540 5.540 15 Si 0.733 3.267 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.108 4.108 20 C -0.015 4.015 21 O -0.298 6.298 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.104 0.896 41 H 0.083 0.917 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.871 -6.486 15.129 17.838 hybrid contribution 0.580 0.142 -0.300 0.668 sum -6.291 -6.344 14.829 17.313 Atomic orbital electron populations 1.21761 0.95159 1.01175 1.02557 1.21483 0.96912 0.93843 1.02385 1.21542 0.92302 0.93007 0.85076 1.22320 1.00228 1.02628 0.97541 1.22805 0.95442 0.89751 1.01717 1.62067 1.12705 1.16767 1.32775 1.22171 0.86889 1.01375 0.96254 1.22199 0.96364 0.91432 0.90853 1.87935 1.78644 1.41964 1.21376 1.20167 0.94987 0.97246 0.75602 1.21094 1.35365 1.06264 0.91954 0.91529 1.24941 0.95483 0.97032 0.97100 1.69972 1.42421 1.34247 1.07357 0.86314 0.78728 0.82293 0.79363 1.19477 1.20913 1.20888 1.22777 0.96981 1.00505 0.90542 1.22640 0.92656 0.84231 1.02007 1.87955 1.77072 1.26298 1.38482 0.92137 0.92215 0.93102 0.90565 0.91611 0.91548 0.92399 0.90443 0.89571 0.94716 0.94152 0.90154 0.94772 0.94392 0.97976 0.98098 0.92809 0.94734 0.89643 0.91721 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.32 37.16 0.35 -1.18 16 2 C -0.11 -1.20 5.24 -26.73 -0.14 -1.34 16 3 C 0.12 1.58 0.80 -90.57 -0.07 1.51 16 4 C -0.17 -2.43 7.68 37.16 0.29 -2.15 16 5 C 0.03 0.44 4.17 -3.71 -0.02 0.42 16 6 N -0.52 -7.95 3.98 -234.31 -0.93 -8.88 16 7 C 0.06 0.93 5.38 -3.82 -0.02 0.91 16 8 C 0.07 1.31 6.13 37.16 0.23 1.54 16 9 O -0.38 -9.30 10.27 -35.23 -0.36 -9.66 16 10 C 0.19 5.41 5.69 36.01 0.20 5.62 16 11 C -0.51 -15.16 9.43 -34.44 -0.32 -15.48 16 12 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 15 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 C 0.02 0.26 5.60 -3.71 -0.02 0.24 16 20 C 0.06 0.76 6.61 37.21 0.25 1.00 16 21 O -0.38 -5.13 9.83 -35.23 -0.35 -5.48 16 22 H 0.06 0.65 7.83 -51.93 -0.41 0.25 16 23 H 0.06 0.62 6.35 -51.93 -0.33 0.29 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.75 6.34 -51.93 -0.33 0.42 16 29 H 0.08 1.27 6.12 -51.93 -0.32 0.95 16 30 H 0.09 1.26 6.74 -51.93 -0.35 0.91 16 31 H 0.03 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.04 0.53 7.99 -51.93 -0.41 0.11 16 33 H 0.08 1.22 7.86 -51.93 -0.41 0.81 16 34 H 0.03 0.63 6.75 -51.92 -0.35 0.28 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 38 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 1.05 8.02 -51.93 -0.42 0.64 16 41 H 0.06 0.85 6.49 -51.93 -0.34 0.51 16 42 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -31.81 327.75 -7.80 -39.61 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -7.43 Total: -3.72 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 0.62 Total: -7.40 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.20 Total: -35.35 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.71 Total: -15.13 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.81 -7.80 -39.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339113412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.180 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds