Wall clock time and date at job start Mon Mar 30 2020 04:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46997 * 2 1 4 4 C 1.52998 * 109.54264 * 305.11189 * 3 2 1 5 5 C 1.53101 * 109.50791 * 185.00203 * 3 2 1 6 6 N 1.47008 * 109.26086 * 183.21838 * 5 3 2 7 7 C 1.46900 * 110.99941 * 182.38970 * 6 5 3 8 8 C 1.53004 * 109.46928 * 75.77376 * 7 6 5 9 9 O 1.42906 * 109.47072 * 65.06488 * 8 7 6 10 10 C 1.42906 * 113.99589 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46855 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99793 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99738 * 179.72151 * 11 10 9 14 14 N 1.31512 * 120.00385 * 0.28044 * 13 11 10 15 15 Si 1.86805 * 119.99723 * 180.27828 * 13 11 10 16 16 H 1.48496 * 109.47268 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47200 * 120.00215 * 15 13 11 18 18 H 1.48501 * 109.47000 * 240.00193 * 15 13 11 19 19 C 1.47016 * 110.75196 * 58.61780 * 6 5 3 20 20 C 1.53101 * 109.25756 * 301.38165 * 19 6 5 21 21 O 1.43016 * 109.25827 * 56.84923 * 20 19 6 22 22 H 1.09004 * 109.46910 * 299.99613 * 1 2 3 23 23 H 1.08995 * 109.47518 * 59.99296 * 1 2 3 24 24 H 1.08995 * 109.47420 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46910 * 240.00387 * 2 1 3 26 26 H 1.08997 * 109.47456 * 120.00157 * 2 1 3 27 27 H 1.08996 * 109.47346 * 299.89078 * 4 3 2 28 28 H 1.08998 * 109.47085 * 59.89640 * 4 3 2 29 29 H 1.09006 * 109.46808 * 179.89058 * 4 3 2 30 30 H 1.09000 * 109.50559 * 63.27923 * 5 3 2 31 31 H 1.08997 * 109.50440 * 303.15710 * 5 3 2 32 32 H 1.08992 * 109.47651 * 315.76947 * 7 6 5 33 33 H 1.09002 * 109.46835 * 195.76877 * 7 6 5 34 34 H 1.09008 * 109.46849 * 305.06961 * 8 7 6 35 35 H 1.08997 * 109.47471 * 185.06677 * 8 7 6 36 36 H 1.08997 * 109.47371 * 59.99847 * 10 9 8 37 37 H 1.08998 * 109.47025 * 299.99977 * 10 9 8 38 38 H 0.96993 * 120.00145 * 180.02562 * 14 13 11 39 39 H 1.09000 * 109.50989 * 61.31657 * 19 6 5 40 40 H 1.09001 * 109.50677 * 181.44952 * 19 6 5 41 41 H 1.08997 * 109.50731 * 296.91960 * 20 19 6 42 42 H 1.08993 * 109.54178 * 176.80275 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4286 2.2015 -1.1795 5 6 3.5658 1.4454 -0.1258 6 7 4.0562 2.8290 -0.0477 7 6 5.5140 2.8814 -0.2213 8 6 5.8590 2.6851 -1.6989 9 8 5.3496 3.7840 -2.4571 10 6 5.6187 3.6980 -3.8580 11 6 5.0392 4.9015 -4.5556 12 1 4.5180 5.6568 -3.9861 13 6 5.1800 5.0416 -5.9200 14 7 5.8151 4.1221 -6.6134 15 14 4.4684 6.5373 -6.7837 16 1 3.8064 7.4163 -5.7866 17 1 5.5598 7.2860 -7.4570 18 1 3.4726 6.0983 -7.7942 19 6 3.6540 3.4534 1.2210 20 6 2.1272 3.4306 1.3333 21 8 1.6664 2.0811 1.2240 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 1.7168 1.7166 -2.1122 28 1 0.3424 2.1992 -1.0892 29 1 1.7912 3.2295 -1.1772 30 1 3.8528 1.0109 -1.0834 31 1 3.9989 0.8594 0.6848 32 1 5.9788 2.0914 0.3685 33 1 5.8850 3.8504 0.1128 34 1 5.4107 1.7580 -2.0566 35 1 6.9415 2.6339 -1.8156 36 1 5.1653 2.7921 -4.2601 37 1 6.6962 3.6676 -4.0197 38 1 5.9144 4.2209 -7.5732 39 1 4.0885 2.8996 2.0532 40 1 4.0053 4.4849 1.2465 41 1 1.6943 4.0290 0.5318 42 1 1.8264 3.8409 2.2972 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339113412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:31 Heat of formation + Delta-G solvation = -117.299620 kcal Electronic energy + Delta-G solvation = -20390.305069 eV Core-core repulsion = 17369.429558 eV Total energy + Delta-G solvation = -3020.875511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.14701 -38.69084 -36.83063 -35.41671 -34.86230 -31.50124 -30.94827 -29.46056 -28.59766 -26.65081 -25.09689 -24.47950 -23.18516 -21.81328 -20.21825 -18.61432 -17.68608 -17.55434 -17.07861 -16.51447 -16.35217 -16.09456 -15.85711 -15.56784 -15.07707 -14.77036 -14.69838 -14.19277 -13.76846 -13.65406 -13.13029 -13.06885 -12.88757 -12.84478 -12.74200 -12.67343 -12.56753 -12.47037 -12.12009 -11.96779 -11.67048 -11.60994 -11.23941 -11.11713 -10.85596 -10.49930 -10.17417 -9.21511 -8.31401 -6.43036 1.39597 1.40963 1.55805 2.35266 2.72308 2.86846 3.02405 3.23743 3.72734 3.89202 3.95327 4.05922 4.14735 4.23270 4.33466 4.38613 4.42246 4.48885 4.59970 4.61870 4.67788 4.69190 4.72605 4.78961 4.83792 4.92137 4.94926 4.99733 5.11321 5.12314 5.19692 5.22903 5.38181 5.53502 5.56383 5.97735 6.03512 6.07325 6.28586 6.57867 6.87341 7.29327 8.81282 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.004906 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.098123 B = 5705.644420 C = 6082.792239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C 0.121 3.879 4 C -0.164 4.164 5 C 0.033 3.967 6 N -0.546 5.546 7 C 0.070 3.930 8 C 0.061 3.939 9 O -0.394 6.394 10 C 0.211 3.789 11 C -0.542 4.542 12 H 0.059 0.941 13 C 0.007 3.993 14 N -0.932 5.932 15 Si 0.981 3.019 16 H -0.265 1.265 17 H -0.270 1.270 18 H -0.272 1.272 19 C 0.022 3.978 20 C 0.060 3.940 21 O -0.383 6.383 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.034 0.966 35 H 0.047 0.953 36 H -0.019 1.019 37 H -0.017 1.017 38 H 0.270 0.730 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 -6.564 16.388 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C 0.082 3.918 4 C -0.222 4.222 5 C -0.095 4.095 6 N -0.271 5.271 7 C -0.058 4.058 8 C -0.017 4.017 9 O -0.313 6.313 10 C 0.135 3.865 11 C -0.580 4.580 12 H 0.077 0.923 13 C -0.191 4.191 14 N -0.571 5.571 15 Si 0.804 3.196 16 H -0.189 1.189 17 H -0.196 1.196 18 H -0.197 1.197 19 C -0.105 4.105 20 C -0.017 4.017 21 O -0.302 6.302 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.065 0.935 36 H -0.002 1.002 37 H 0.001 0.999 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.521 -6.281 16.066 18.819 hybrid contribution 0.809 0.020 -0.541 0.973 sum -6.713 -6.261 15.525 18.036 Atomic orbital electron populations 1.21730 0.94446 1.02143 1.02004 1.21507 0.97518 0.92381 1.03066 1.21570 0.91759 0.94017 0.84482 1.22253 1.00986 1.01139 0.97788 1.22794 0.96054 0.89292 1.01407 1.62000 1.12626 1.17765 1.34687 1.22075 0.87548 1.02580 0.93599 1.22540 0.96795 0.89812 0.92519 1.87892 1.79202 1.44444 1.19773 1.19768 0.93325 0.95829 0.77544 1.21385 1.36589 1.07009 0.93019 0.92263 1.25935 0.95299 1.00362 0.97551 1.70073 1.42854 1.36115 1.08077 0.85165 0.78313 0.78032 0.78078 1.18908 1.19566 1.19677 1.22807 0.97343 1.00647 0.89729 1.22764 0.92266 0.83656 1.02993 1.87954 1.77175 1.26794 1.38292 0.92671 0.92720 0.91418 0.90049 0.90745 0.92779 0.91268 0.92945 0.90937 0.93443 0.91139 0.89953 0.94798 0.93533 1.00174 0.99948 0.92100 0.93392 0.89315 0.93156 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.32 71.98 0.67 -2.08 16 2 C -0.11 -2.21 5.24 30.59 0.16 -2.05 16 3 C 0.12 3.09 0.80 -10.76 -0.01 3.08 16 4 C -0.16 -4.76 7.68 71.98 0.55 -4.21 16 5 C 0.03 0.89 4.17 86.32 0.36 1.25 16 6 N -0.55 -16.31 3.98 -895.21 -3.56 -19.87 16 7 C 0.07 2.05 5.38 86.30 0.46 2.52 16 8 C 0.06 2.31 6.13 71.98 0.44 2.75 16 9 O -0.39 -19.76 10.27 -148.98 -1.53 -21.29 16 10 C 0.21 12.14 5.69 71.24 0.41 12.55 16 11 C -0.54 -33.03 9.43 25.60 0.24 -32.78 16 12 H 0.06 3.60 7.81 -2.91 -0.02 3.58 16 13 C 0.01 0.39 5.46 84.65 0.46 0.86 16 14 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 15 Si 0.98 45.08 29.54 68.60 2.03 47.11 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 C 0.02 0.54 5.60 86.31 0.48 1.03 16 20 C 0.06 1.38 6.61 72.02 0.48 1.86 16 21 O -0.38 -9.76 9.83 -148.98 -1.46 -11.23 16 22 H 0.05 1.10 7.83 -2.38 -0.02 1.08 16 23 H 0.05 1.07 6.35 -2.39 -0.02 1.06 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.07 1.79 6.34 -2.39 -0.02 1.77 16 29 H 0.05 1.77 6.12 -2.38 -0.01 1.75 16 30 H 0.07 2.13 6.74 -2.39 -0.02 2.12 16 31 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 32 H 0.07 1.67 7.99 -2.39 -0.02 1.66 16 33 H 0.08 2.39 7.86 -2.39 -0.02 2.37 16 34 H 0.03 1.28 6.75 -2.38 -0.02 1.27 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 37 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 2.06 8.02 -2.39 -0.02 2.04 16 41 H 0.05 1.31 6.49 -2.39 -0.02 1.29 16 42 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -68.27 327.75 1.43 -66.84 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.96 Total: 10.16 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 4.71 Total: -15.24 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -3.27 Total: -76.34 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -3.00 Total: -32.52 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -68.27 1.43 -66.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339113412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.464 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds