Wall clock time and date at job start Mon Mar 30 2020 04:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 C 1.52997 * 109.88005 * 65.30016 * 3 2 1 5 5 O 1.42896 * 109.47161 * 294.82604 * 4 3 2 6 6 C 1.54323 * 110.01984 * 304.18441 * 3 2 1 7 7 C 1.55137 * 103.01632 * 218.23567 * 6 3 2 8 8 C 1.54910 * 101.65560 * 35.65333 * 7 6 3 9 9 N 1.47438 * 109.88700 * 186.33504 * 3 2 1 10 10 C 1.46896 * 111.00447 * 356.30838 * 9 3 2 11 11 C 1.52999 * 109.47411 * 176.94780 * 10 9 3 12 12 O 1.42904 * 109.46972 * 65.00156 * 11 10 9 13 13 C 1.42901 * 113.99726 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46695 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00150 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99577 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99538 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00229 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47142 * 89.99397 * 18 16 14 20 20 H 1.48504 * 109.46713 * 209.99536 * 18 16 14 21 21 H 1.48497 * 109.46783 * 329.99154 * 18 16 14 22 22 H 1.08999 * 109.47415 * 53.01808 * 1 2 3 23 23 H 1.09000 * 109.46872 * 173.01587 * 1 2 3 24 24 H 1.09004 * 109.47469 * 293.01380 * 1 2 3 25 25 H 1.09002 * 109.47402 * 239.99600 * 2 1 3 26 26 H 1.09005 * 109.47179 * 119.99831 * 2 1 3 27 27 H 1.08996 * 109.47074 * 174.82251 * 4 3 2 28 28 H 1.09001 * 109.47019 * 54.82464 * 4 3 2 29 29 H 0.96699 * 113.99783 * 180.02562 * 5 4 3 30 30 H 1.08999 * 110.70648 * 336.61739 * 6 3 2 31 31 H 1.08995 * 110.70507 * 99.85139 * 6 3 2 32 32 H 1.09000 * 110.99166 * 277.56580 * 7 6 3 33 33 H 1.09000 * 111.02596 * 153.75938 * 7 6 3 34 34 H 1.09000 * 110.37181 * 204.10012 * 8 7 6 35 35 H 1.09004 * 110.46614 * 81.80685 * 8 7 6 36 36 H 1.09002 * 109.47451 * 296.94899 * 10 9 3 37 37 H 1.09001 * 109.47175 * 56.94672 * 10 9 3 38 38 H 1.08999 * 109.47176 * 185.00073 * 11 10 9 39 39 H 1.08991 * 109.47248 * 304.99824 * 11 10 9 40 40 H 1.09000 * 109.46820 * 299.99572 * 13 12 11 41 41 H 1.08996 * 109.47017 * 60.00029 * 13 12 11 42 42 H 0.96999 * 119.99674 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6465 2.1335 1.3072 5 8 0.2236 2.2441 1.3779 6 6 1.4480 2.2122 -1.1995 7 6 2.6307 3.1041 -1.6604 8 6 3.8430 2.1756 -1.3999 9 7 3.5063 1.4561 -0.1530 10 6 4.0464 0.0901 -0.1712 11 6 5.5572 0.1421 -0.4072 12 8 6.1906 0.7843 0.7013 13 6 7.6108 0.8856 0.5803 14 6 8.1706 1.5759 1.7975 15 1 7.5081 1.9039 2.5848 16 6 9.5287 1.7876 1.9063 17 7 10.0171 2.3904 2.9682 18 14 10.6746 1.2196 0.5448 19 1 10.8361 2.3079 -0.4525 20 1 11.9990 0.8776 1.1232 21 1 10.0998 0.0217 -0.1182 22 1 -0.3634 0.6182 -0.8209 23 1 -0.3633 -1.0201 -0.1250 24 1 -0.3634 0.4018 0.9459 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0905 3.1284 1.3401 28 1 2.0077 1.5463 2.1515 29 1 -0.0979 2.6739 2.1823 30 1 1.1529 1.5238 -1.9914 31 1 0.6030 2.8247 -0.8852 32 1 2.6955 4.0094 -1.0567 33 1 2.5466 3.3486 -2.7193 34 1 4.7501 2.7647 -1.2651 35 1 3.9674 1.4714 -2.2226 36 1 3.8444 -0.3933 0.7846 37 1 3.5729 -0.4772 -0.9725 38 1 5.9441 -0.8717 -0.5093 39 1 5.7635 0.7032 -1.3185 40 1 8.0406 -0.1127 0.4985 41 1 7.8593 1.4624 -0.3105 42 1 10.9725 2.5397 3.0446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339113681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:03 Heat of formation + Delta-G solvation = -87.382309 kcal Electronic energy + Delta-G solvation = -20405.192597 eV Core-core repulsion = 17385.614398 eV Total energy + Delta-G solvation = -3019.578199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.20726 -37.02885 -36.20002 -33.17187 -32.90498 -32.20023 -29.03335 -28.28796 -26.86870 -25.23090 -23.38560 -22.27310 -21.79237 -20.57504 -18.36574 -17.35715 -16.78852 -16.22636 -15.88550 -15.43749 -15.10954 -14.58404 -14.46003 -14.17633 -13.72550 -13.33877 -13.16589 -12.69871 -12.59972 -12.19045 -12.11874 -11.93014 -11.60612 -11.51665 -11.27188 -11.01914 -10.95077 -10.85577 -10.73531 -10.56189 -10.35985 -10.22631 -9.83002 -9.67233 -9.13020 -8.78871 -8.40721 -8.05869 -6.08092 -4.06282 3.26246 3.33090 3.34722 3.69919 4.38204 4.51657 4.60454 4.63946 4.82750 4.86956 5.15425 5.20209 5.23307 5.34080 5.40410 5.45949 5.50580 5.54141 5.64948 5.66126 5.76747 5.85815 5.92020 5.92945 5.97052 6.02477 6.06765 6.18171 6.23720 6.27026 6.32027 6.49333 6.64494 7.04113 7.19273 7.26621 7.61730 7.64392 8.09508 8.72857 9.05199 9.51865 11.05160 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.031897 B = 0.004518 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.621040 B = 6196.322197 C = 6320.525643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.131 4.131 3 C 0.104 3.896 4 C 0.097 3.903 5 O -0.570 6.570 6 C -0.125 4.125 7 C -0.132 4.132 8 C 0.045 3.955 9 N -0.507 5.507 10 C 0.056 3.944 11 C 0.058 3.942 12 O -0.364 6.364 13 C 0.168 3.832 14 C -0.514 4.514 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.875 3.125 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.267 1.267 22 H 0.051 0.949 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.373 0.627 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.037 0.963 40 H 0.000 1.000 41 H -0.004 1.004 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.807 -2.552 -9.105 21.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.014 3.986 4 C 0.019 3.981 5 O -0.375 6.375 6 C -0.163 4.163 7 C -0.171 4.171 8 C -0.083 4.083 9 N -0.231 5.231 10 C -0.072 4.072 11 C -0.020 4.020 12 O -0.283 6.283 13 C 0.092 3.908 14 C -0.552 4.552 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.702 3.298 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.192 1.192 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.098 0.902 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.220 0.780 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.017 0.983 41 H 0.013 0.987 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.438 -2.471 -9.000 20.666 hybrid contribution 0.717 -0.547 -1.041 1.377 sum -17.721 -3.018 -10.041 20.591 Atomic orbital electron populations 1.21876 0.94888 1.00037 1.03837 1.22054 0.97131 0.95892 1.01888 1.21624 0.87557 0.94691 0.94689 1.21969 0.79872 0.99626 0.96637 1.86464 1.21938 1.82953 1.46139 1.22798 0.98403 0.98413 0.96727 1.22747 0.94582 0.98714 1.01012 1.23058 0.98991 0.96139 0.90082 1.63259 1.08324 1.15763 1.35797 1.22393 0.93731 0.89494 1.01578 1.22429 0.92158 0.96202 0.91205 1.88018 1.21541 1.78878 1.39854 1.20581 0.77759 0.95013 0.97438 1.20899 0.92790 1.37442 1.04088 0.89926 1.24765 0.97635 0.94836 0.95752 1.69880 1.13309 1.42354 1.28022 0.86862 0.80663 0.79697 0.82577 1.19987 1.20828 1.19193 0.92976 0.94146 0.90209 0.92114 0.91460 0.93005 0.93268 0.77980 0.91754 0.89952 0.90710 0.91139 0.89631 0.93938 0.89799 0.93560 0.94173 0.94450 0.98274 0.98674 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.86 37.15 0.33 -1.23 16 2 C -0.13 -1.52 3.65 -26.73 -0.10 -1.62 16 3 C 0.10 1.31 0.86 -130.61 -0.11 1.20 16 4 C 0.10 1.19 6.23 37.16 0.23 1.42 16 5 O -0.57 -5.69 9.36 -35.23 -0.33 -6.02 16 6 C -0.13 -1.41 4.62 -24.91 -0.12 -1.53 16 7 C -0.13 -1.53 7.08 -24.59 -0.17 -1.70 16 8 C 0.04 0.62 5.28 -2.30 -0.01 0.61 16 9 N -0.51 -7.65 4.84 -215.75 -1.04 -8.69 16 10 C 0.06 0.84 4.14 -3.83 -0.02 0.82 16 11 C 0.06 1.04 5.88 37.16 0.22 1.26 16 12 O -0.36 -8.66 10.27 -35.23 -0.36 -9.03 16 13 C 0.17 4.34 4.76 36.01 0.17 4.52 16 14 C -0.51 -15.55 9.99 -34.44 -0.34 -15.90 16 15 H 0.08 2.74 8.06 -52.49 -0.42 2.32 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 18 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 22 H 0.05 0.54 6.58 -51.93 -0.34 0.20 16 23 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.87 5.79 -51.93 -0.30 0.57 16 25 H 0.06 0.69 6.26 -51.93 -0.33 0.36 16 26 H 0.07 0.82 7.05 -51.93 -0.37 0.45 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.37 2.29 9.12 45.56 0.42 2.70 16 30 H 0.06 0.69 7.39 -51.93 -0.38 0.31 16 31 H 0.08 0.93 7.08 -51.93 -0.37 0.56 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.34 8.12 -51.93 -0.42 0.92 16 35 H 0.04 0.55 7.46 -51.93 -0.39 0.16 16 36 H 0.08 1.30 7.05 -51.93 -0.37 0.93 16 37 H 0.05 0.59 6.16 -51.93 -0.32 0.27 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.04 0.64 6.67 -51.93 -0.35 0.29 16 40 H 0.00 -0.01 7.20 -51.93 -0.37 -0.38 16 41 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 42 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -32.75 318.17 -7.26 -40.01 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.40 Total: -0.73 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.02 Total: -10.11 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.27 Total: -35.92 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.69 Total: -15.05 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.75 -7.26 -40.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339113681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.376 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds