Wall clock time and date at job start Mon Mar 30 2020 04:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 C 1.52997 * 109.88005 * 65.30016 * 3 2 1 5 5 O 1.42896 * 109.47161 * 294.82604 * 4 3 2 6 6 C 1.54323 * 110.01984 * 304.18441 * 3 2 1 7 7 C 1.55137 * 103.01632 * 218.23567 * 6 3 2 8 8 C 1.54910 * 101.65560 * 35.65333 * 7 6 3 9 9 N 1.47438 * 109.88700 * 186.33504 * 3 2 1 10 10 C 1.46896 * 111.00447 * 356.30838 * 9 3 2 11 11 C 1.52999 * 109.47411 * 176.94780 * 10 9 3 12 12 O 1.42904 * 109.46972 * 65.00156 * 11 10 9 13 13 C 1.42901 * 113.99726 * 180.02562 * 12 11 10 14 14 C 1.50704 * 109.46695 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00150 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99577 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99538 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00229 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47142 * 89.99397 * 18 16 14 20 20 H 1.48504 * 109.46713 * 209.99536 * 18 16 14 21 21 H 1.48497 * 109.46783 * 329.99154 * 18 16 14 22 22 H 1.08999 * 109.47415 * 53.01808 * 1 2 3 23 23 H 1.09000 * 109.46872 * 173.01587 * 1 2 3 24 24 H 1.09004 * 109.47469 * 293.01380 * 1 2 3 25 25 H 1.09002 * 109.47402 * 239.99600 * 2 1 3 26 26 H 1.09005 * 109.47179 * 119.99831 * 2 1 3 27 27 H 1.08996 * 109.47074 * 174.82251 * 4 3 2 28 28 H 1.09001 * 109.47019 * 54.82464 * 4 3 2 29 29 H 0.96699 * 113.99783 * 180.02562 * 5 4 3 30 30 H 1.08999 * 110.70648 * 336.61739 * 6 3 2 31 31 H 1.08995 * 110.70507 * 99.85139 * 6 3 2 32 32 H 1.09000 * 110.99166 * 277.56580 * 7 6 3 33 33 H 1.09000 * 111.02596 * 153.75938 * 7 6 3 34 34 H 1.09000 * 110.37181 * 204.10012 * 8 7 6 35 35 H 1.09004 * 110.46614 * 81.80685 * 8 7 6 36 36 H 1.09002 * 109.47451 * 296.94899 * 10 9 3 37 37 H 1.09001 * 109.47175 * 56.94672 * 10 9 3 38 38 H 1.08999 * 109.47176 * 185.00073 * 11 10 9 39 39 H 1.08991 * 109.47248 * 304.99824 * 11 10 9 40 40 H 1.09000 * 109.46820 * 299.99572 * 13 12 11 41 41 H 1.08996 * 109.47017 * 60.00029 * 13 12 11 42 42 H 0.96999 * 119.99674 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6465 2.1335 1.3072 5 8 0.2236 2.2441 1.3779 6 6 1.4480 2.2122 -1.1995 7 6 2.6307 3.1041 -1.6604 8 6 3.8430 2.1756 -1.3999 9 7 3.5063 1.4561 -0.1530 10 6 4.0464 0.0901 -0.1712 11 6 5.5572 0.1421 -0.4072 12 8 6.1906 0.7843 0.7013 13 6 7.6108 0.8856 0.5803 14 6 8.1706 1.5759 1.7975 15 1 7.5081 1.9039 2.5848 16 6 9.5287 1.7876 1.9063 17 7 10.0171 2.3904 2.9682 18 14 10.6746 1.2196 0.5448 19 1 10.8361 2.3079 -0.4525 20 1 11.9990 0.8776 1.1232 21 1 10.0998 0.0217 -0.1182 22 1 -0.3634 0.6182 -0.8209 23 1 -0.3633 -1.0201 -0.1250 24 1 -0.3634 0.4018 0.9459 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 2.0905 3.1284 1.3401 28 1 2.0077 1.5463 2.1515 29 1 -0.0979 2.6739 2.1823 30 1 1.1529 1.5238 -1.9914 31 1 0.6030 2.8247 -0.8852 32 1 2.6955 4.0094 -1.0567 33 1 2.5466 3.3486 -2.7193 34 1 4.7501 2.7647 -1.2651 35 1 3.9674 1.4714 -2.2226 36 1 3.8444 -0.3933 0.7846 37 1 3.5729 -0.4772 -0.9725 38 1 5.9441 -0.8717 -0.5093 39 1 5.7635 0.7032 -1.3185 40 1 8.0406 -0.1127 0.4985 41 1 7.8593 1.4624 -0.3105 42 1 10.9725 2.5397 3.0446 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339113681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:03 Heat of formation + Delta-G solvation = -112.860426 kcal Electronic energy + Delta-G solvation = -20406.297411 eV Core-core repulsion = 17385.614398 eV Total energy + Delta-G solvation = -3020.683013 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.23038 -38.61129 -37.26467 -34.94257 -34.06778 -33.62181 -30.48912 -29.69567 -28.32961 -26.26734 -24.34831 -23.92780 -23.39319 -21.67721 -19.44087 -18.96340 -18.26437 -17.50695 -17.20824 -16.70018 -16.48250 -16.25169 -15.68404 -15.46709 -14.93883 -14.67865 -14.56814 -14.13695 -13.82623 -13.50657 -13.38428 -13.10062 -12.89685 -12.85069 -12.52551 -12.39791 -12.20445 -11.96085 -11.90810 -11.86813 -11.77893 -11.51200 -11.31736 -11.18112 -10.91714 -10.58375 -10.29636 -9.13299 -8.36937 -6.44459 1.32277 1.35691 1.46559 2.29317 2.70597 2.95580 3.11528 3.56681 3.67698 3.82843 3.92632 4.17173 4.20774 4.25775 4.33351 4.39243 4.46773 4.51003 4.53870 4.56449 4.63496 4.68022 4.74328 4.90846 4.93098 4.96435 5.02164 5.04116 5.10557 5.17721 5.22018 5.35673 5.38123 5.44909 5.65444 5.94493 6.15653 6.20167 6.59864 6.80566 6.92903 7.20291 8.80542 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.031897 B = 0.004518 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.621040 B = 6196.322197 C = 6320.525643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.100 3.900 4 C 0.104 3.896 5 O -0.567 6.567 6 C -0.115 4.115 7 C -0.126 4.126 8 C 0.043 3.957 9 N -0.537 5.537 10 C 0.063 3.937 11 C 0.050 3.950 12 O -0.392 6.392 13 C 0.180 3.820 14 C -0.543 4.543 15 H 0.027 0.973 16 C 0.013 3.987 17 N -0.944 5.944 18 Si 0.956 3.044 19 H -0.260 1.260 20 H -0.272 1.272 21 H -0.246 1.246 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.033 0.967 29 H 0.391 0.609 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.010 0.990 41 H 0.007 0.993 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.366 -3.728 -11.820 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C 0.011 3.989 4 C 0.025 3.975 5 O -0.374 6.374 6 C -0.154 4.154 7 C -0.164 4.164 8 C -0.085 4.085 9 N -0.262 5.262 10 C -0.065 4.065 11 C -0.027 4.027 12 O -0.312 6.312 13 C 0.104 3.896 14 C -0.580 4.580 15 H 0.046 0.954 16 C -0.185 4.185 17 N -0.583 5.583 18 Si 0.777 3.223 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.170 1.170 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.240 0.760 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.027 0.973 41 H 0.024 0.976 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.039 -3.644 -11.706 22.645 hybrid contribution 0.784 -0.129 -0.077 0.798 sum -18.255 -3.773 -11.783 22.053 Atomic orbital electron populations 1.21814 0.93841 1.00731 1.03635 1.22009 0.97951 0.94935 1.01679 1.21697 0.86240 0.95741 0.95241 1.21770 0.80993 0.98454 0.96287 1.86426 1.20302 1.83238 1.47476 1.22735 0.98041 0.98298 0.96293 1.22717 0.93605 0.97863 1.02223 1.23024 0.98842 0.96529 0.90059 1.63165 1.10155 1.15962 1.36920 1.22336 0.91902 0.90056 1.02177 1.22788 0.93570 0.96604 0.89787 1.87976 1.20420 1.79967 1.42813 1.20278 0.79153 0.94819 0.95377 1.21157 0.93077 1.38956 1.04850 0.95423 1.25844 0.99426 0.94339 0.98869 1.70039 1.14290 1.43388 1.30588 0.85598 0.77782 0.80174 0.78705 1.18416 1.19739 1.16958 0.92645 0.93114 0.90797 0.91392 0.92509 0.94520 0.94874 0.75976 0.90494 0.89767 0.91719 0.88913 0.92386 0.92486 0.90814 0.90462 0.92542 0.93386 0.97267 0.97581 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.86 71.98 0.64 -2.02 16 2 C -0.13 -2.72 3.65 30.59 0.11 -2.61 16 3 C 0.10 2.41 0.86 3.87 0.00 2.42 16 4 C 0.10 2.55 6.23 71.98 0.45 3.00 16 5 O -0.57 -10.71 9.36 -148.98 -1.39 -12.10 16 6 C -0.12 -2.35 4.62 31.78 0.15 -2.21 16 7 C -0.13 -2.71 7.08 31.98 0.23 -2.48 16 8 C 0.04 1.14 5.28 86.77 0.46 1.60 16 9 N -0.54 -15.94 4.84 -836.50 -4.05 -19.99 16 10 C 0.06 1.81 4.14 86.30 0.36 2.17 16 11 C 0.05 1.71 5.88 71.98 0.42 2.14 16 12 O -0.39 -18.88 10.27 -148.98 -1.53 -20.41 16 13 C 0.18 9.27 4.76 71.24 0.34 9.61 16 14 C -0.54 -33.95 9.99 25.60 0.26 -33.69 16 15 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 16 C 0.01 0.78 5.47 84.65 0.46 1.24 16 17 N -0.94 -60.38 13.96 21.45 0.30 -60.08 16 18 Si 0.96 44.04 27.47 68.60 1.88 45.92 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.25 -10.44 6.54 99.48 0.65 -9.79 16 22 H 0.05 1.00 6.58 -2.39 -0.02 0.98 16 23 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 1.47 5.79 -2.38 -0.01 1.46 16 25 H 0.07 1.34 6.26 -2.39 -0.01 1.33 16 26 H 0.06 1.32 7.05 -2.38 -0.02 1.31 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.39 4.37 9.12 -74.06 -0.68 3.70 16 30 H 0.08 1.40 7.39 -2.39 -0.02 1.38 16 31 H 0.08 1.71 7.08 -2.39 -0.02 1.69 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.84 8.12 -2.39 -0.02 1.82 16 35 H 0.06 1.33 7.46 -2.38 -0.02 1.31 16 36 H 0.07 2.26 7.05 -2.39 -0.02 2.24 16 37 H 0.08 1.75 6.16 -2.39 -0.01 1.74 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.56 6.67 -2.39 -0.02 1.54 16 40 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16 41 H 0.01 0.32 7.57 -2.39 -0.02 0.30 16 42 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -72.72 318.17 -0.66 -73.38 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.26 Total: 14.12 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 3.87 Total: -20.84 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -3.75 Total: -80.07 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -2.92 Total: -32.51 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -72.72 -0.66 -73.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339113681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.484 kcal (2) G-P(sol) polarization free energy of solvation -72.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds