Wall clock time and date at job start Mon Mar 30 2020 04:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99889 * 2 1 4 4 H 1.48506 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48486 * 109.47303 * 299.99867 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00229 * 3 2 1 7 7 C 1.37880 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99512 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99934 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.42891 * 114.00210 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47454 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46859 * 64.99850 * 12 11 10 14 14 C 1.46899 * 110.99927 * 180.02562 * 13 12 11 15 15 H 1.08997 * 110.05677 * 33.58188 * 14 13 12 16 16 C 1.53878 * 110.02986 * 272.16849 * 14 13 12 17 17 C 1.54266 * 106.59974 * 240.71440 * 16 14 13 18 18 C 1.54895 * 104.19552 * 336.39401 * 17 16 14 19 19 C 1.54268 * 110.03401 * 155.00333 * 14 13 12 20 20 H 1.09003 * 110.59444 * 24.16024 * 19 14 13 21 21 C 1.52999 * 110.48215 * 261.57473 * 19 14 13 22 22 C 1.53006 * 109.46626 * 178.77049 * 21 19 14 23 23 O 1.42906 * 109.46748 * 179.97438 * 22 21 19 24 24 H 0.96996 * 120.00057 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47184 * 60.00199 * 9 7 2 26 26 H 1.09000 * 109.47086 * 300.00024 * 9 7 2 27 27 H 1.08998 * 109.47212 * 60.00086 * 11 10 9 28 28 H 1.09001 * 109.47449 * 300.00202 * 11 10 9 29 29 H 1.09001 * 109.46808 * 305.00543 * 12 11 10 30 30 H 1.08996 * 109.47194 * 185.00183 * 12 11 10 31 31 H 1.00897 * 111.00220 * 303.96182 * 13 12 11 32 32 H 1.09000 * 110.03306 * 121.43305 * 16 14 13 33 33 H 1.09002 * 110.07495 * 0.02562 * 16 14 13 34 34 H 1.08997 * 110.48817 * 217.71386 * 17 16 14 35 35 H 1.09002 * 110.59705 * 95.12287 * 17 16 14 36 36 H 1.09007 * 110.75377 * 279.62637 * 18 17 16 37 37 H 1.08994 * 110.91953 * 156.33346 * 18 17 16 38 38 H 1.08993 * 109.47839 * 58.77118 * 21 19 14 39 39 H 1.09000 * 109.47160 * 298.76680 * 21 19 14 40 40 H 1.09000 * 109.47050 * 299.99699 * 22 21 19 41 41 H 1.09001 * 109.46801 * 59.99811 * 22 21 19 42 42 H 0.96698 * 113.99401 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6480 -5.9562 0.0006 13 7 3.4072 -5.8879 1.2565 14 6 4.4586 -6.9132 1.2925 15 1 4.8510 -7.0816 0.2896 16 6 3.8956 -8.2256 1.8654 17 6 4.7097 -8.5358 3.1385 18 6 6.0467 -7.7828 2.9273 19 6 5.5952 -6.4716 2.2374 20 1 5.2254 -5.7599 2.9756 21 6 6.7490 -5.8619 1.4388 22 6 7.8486 -5.4047 2.3995 23 8 8.9265 -4.8357 1.6535 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 0.9453 -4.9822 -0.8903 28 1 0.9446 -4.9827 0.8897 29 1 3.3222 -5.7955 -0.8406 30 1 2.1821 -6.9375 -0.0894 31 1 3.7956 -4.9670 1.3946 32 1 4.0148 -9.0310 1.1406 33 1 2.8420 -8.1027 2.1166 34 1 4.8855 -9.6079 3.2272 35 1 4.1958 -8.1600 4.0233 36 1 6.7120 -8.3517 2.2778 37 1 6.5290 -7.5711 3.8815 38 1 6.3850 -5.0065 0.8698 39 1 7.1518 -6.6086 0.7545 40 1 7.4458 -4.6579 3.0838 41 1 8.2126 -6.2602 2.9685 42 1 9.6608 -4.5232 2.1996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339124808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:27 Heat of formation + Delta-G solvation = -125.675731 kcal Electronic energy + Delta-G solvation = -19425.226725 eV Core-core repulsion = 16403.987999 eV Total energy + Delta-G solvation = -3021.238726 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.21447 -37.08524 -36.67556 -34.24066 -32.61965 -32.15276 -29.28945 -27.15132 -26.93344 -25.54707 -22.49139 -22.35538 -21.57316 -20.06018 -19.73635 -17.47613 -16.51367 -16.27756 -15.59674 -15.36189 -15.18907 -14.89605 -14.38783 -14.10987 -13.96576 -13.70171 -13.29598 -13.23554 -12.39278 -12.22714 -11.80961 -11.53126 -11.40147 -11.36832 -11.13119 -11.00493 -10.80542 -10.76676 -10.69394 -10.63961 -10.53835 -10.36043 -10.06240 -9.96154 -9.07630 -8.81136 -8.17326 -8.15094 -6.09709 -4.11272 3.29905 3.36349 3.42892 3.97662 4.35897 4.36975 4.48876 4.62101 4.83313 4.96857 4.99654 5.10758 5.26901 5.29172 5.37363 5.41871 5.46427 5.49958 5.59548 5.60108 5.70605 5.77599 5.82706 5.91819 5.98274 6.06730 6.09257 6.17398 6.26564 6.27601 6.31334 6.40860 7.13282 7.32782 7.45794 7.47143 7.71046 7.80829 8.16984 8.59730 9.02453 9.53663 11.01903 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.004450 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.732459 B = 6291.279612 C = 7564.909763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.399 6.399 11 C 0.062 3.938 12 C 0.065 3.935 13 N -0.680 5.680 14 C 0.087 3.913 15 H 0.046 0.954 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.119 4.119 19 C -0.093 4.093 20 H 0.088 0.912 21 C -0.115 4.115 22 C 0.076 3.924 23 O -0.576 6.576 24 H 0.263 0.737 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.039 0.961 28 H 0.046 0.954 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.355 0.645 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.236 -16.440 5.878 21.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.319 6.319 11 C -0.016 4.016 12 C -0.064 4.064 13 N -0.314 5.314 14 C -0.023 4.023 15 H 0.064 0.936 16 C -0.154 4.154 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.112 4.112 20 H 0.106 0.894 21 C -0.153 4.153 22 C -0.001 4.001 23 O -0.381 6.381 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.175 0.825 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 11.421 -16.809 5.711 21.109 hybrid contribution 0.914 1.392 -0.186 1.676 sum 12.335 -15.417 5.525 20.502 Atomic orbital electron populations 1.69974 1.06102 1.27014 1.50686 1.24946 0.94957 0.99412 0.95175 0.86300 0.80035 0.82669 0.77614 1.19493 1.20858 1.20835 1.21095 0.94038 0.89406 1.50629 0.91582 1.20176 0.88712 0.83495 0.95361 1.87786 1.35767 1.13134 1.95222 1.22294 0.94565 0.85296 0.99433 1.21988 0.95932 0.97891 0.90569 1.60676 1.26646 1.08840 1.35201 1.22176 0.90163 0.92663 0.97288 0.93642 1.22209 1.00837 0.95803 0.96593 1.22297 0.95717 0.99453 0.98372 1.22547 0.97305 0.95725 1.00088 1.22134 0.94081 0.97373 0.97567 0.89420 1.21591 0.94196 1.01357 0.98148 1.22219 0.87673 0.96377 0.93846 1.86497 1.31214 1.82216 1.38190 0.92729 0.97856 0.97624 0.94262 0.93611 0.94848 0.90820 0.82474 0.92506 0.90505 0.92115 0.91468 0.91555 0.91698 0.90887 0.91391 0.93492 0.93753 0.77625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16 8 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 9 C 0.20 5.48 5.69 36.00 0.20 5.68 16 10 O -0.40 -9.66 9.85 -35.23 -0.35 -10.01 16 11 C 0.06 1.18 6.28 37.16 0.23 1.41 16 12 C 0.07 1.02 5.93 -3.82 -0.02 0.99 16 13 N -0.68 -10.20 6.17 -105.54 -0.65 -10.85 16 14 C 0.09 1.06 2.82 -66.59 -0.19 0.87 16 15 H 0.05 0.57 7.51 -51.93 -0.39 0.19 16 16 C -0.12 -1.24 6.55 -25.61 -0.17 -1.41 16 17 C -0.12 -1.11 6.83 -25.07 -0.17 -1.28 16 18 C -0.12 -1.06 5.51 -24.74 -0.14 -1.20 16 19 C -0.09 -1.01 2.32 -88.96 -0.21 -1.21 16 20 H 0.09 1.04 7.96 -51.93 -0.41 0.62 16 21 C -0.12 -1.32 4.94 -26.73 -0.13 -1.45 16 22 C 0.08 0.77 6.89 37.16 0.26 1.03 16 23 O -0.58 -6.43 13.66 -35.23 -0.48 -6.91 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.53 8.07 -51.93 -0.42 0.11 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.36 5.97 7.88 -39.29 -0.31 5.66 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.57 8.02 -51.92 -0.42 0.15 16 37 H 0.06 0.52 8.00 -51.93 -0.42 0.10 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.04 0.37 7.38 -51.93 -0.38 -0.01 16 42 H 0.38 2.38 9.12 45.56 0.42 2.80 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -32.21 339.96 -8.33 -40.54 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.94 Total: 2.12 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -0.75 Total: -10.61 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.09 Total: -37.27 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.83 Total: -16.92 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.21 -8.33 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339124808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.135 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds