Wall clock time and date at job start Mon Mar 30 2020 04:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99889 * 2 1 4 4 H 1.48506 * 109.46825 * 179.97438 * 3 2 1 5 5 H 1.48486 * 109.47303 * 299.99867 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00229 * 3 2 1 7 7 C 1.37880 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99512 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99934 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.42891 * 114.00210 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47454 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46859 * 64.99850 * 12 11 10 14 14 C 1.46899 * 110.99927 * 180.02562 * 13 12 11 15 15 H 1.08997 * 110.05677 * 33.58188 * 14 13 12 16 16 C 1.53878 * 110.02986 * 272.16849 * 14 13 12 17 17 C 1.54266 * 106.59974 * 240.71440 * 16 14 13 18 18 C 1.54895 * 104.19552 * 336.39401 * 17 16 14 19 19 C 1.54268 * 110.03401 * 155.00333 * 14 13 12 20 20 H 1.09003 * 110.59444 * 24.16024 * 19 14 13 21 21 C 1.52999 * 110.48215 * 261.57473 * 19 14 13 22 22 C 1.53006 * 109.46626 * 178.77049 * 21 19 14 23 23 O 1.42906 * 109.46748 * 179.97438 * 22 21 19 24 24 H 0.96996 * 120.00057 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47184 * 60.00199 * 9 7 2 26 26 H 1.09000 * 109.47086 * 300.00024 * 9 7 2 27 27 H 1.08998 * 109.47212 * 60.00086 * 11 10 9 28 28 H 1.09001 * 109.47449 * 300.00202 * 11 10 9 29 29 H 1.09001 * 109.46808 * 305.00543 * 12 11 10 30 30 H 1.08996 * 109.47194 * 185.00183 * 12 11 10 31 31 H 1.00897 * 111.00220 * 303.96182 * 13 12 11 32 32 H 1.09000 * 110.03306 * 121.43305 * 16 14 13 33 33 H 1.09002 * 110.07495 * 0.02562 * 16 14 13 34 34 H 1.08997 * 110.48817 * 217.71386 * 17 16 14 35 35 H 1.09002 * 110.59705 * 95.12287 * 17 16 14 36 36 H 1.09007 * 110.75377 * 279.62637 * 18 17 16 37 37 H 1.08994 * 110.91953 * 156.33346 * 18 17 16 38 38 H 1.08993 * 109.47839 * 58.77118 * 21 19 14 39 39 H 1.09000 * 109.47160 * 298.76680 * 21 19 14 40 40 H 1.09000 * 109.47050 * 299.99699 * 22 21 19 41 41 H 1.09001 * 109.46801 * 59.99811 * 22 21 19 42 42 H 0.96698 * 113.99401 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5854 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6480 -5.9562 0.0006 13 7 3.4072 -5.8879 1.2565 14 6 4.4586 -6.9132 1.2925 15 1 4.8510 -7.0816 0.2896 16 6 3.8956 -8.2256 1.8654 17 6 4.7097 -8.5358 3.1385 18 6 6.0467 -7.7828 2.9273 19 6 5.5952 -6.4716 2.2374 20 1 5.2254 -5.7599 2.9756 21 6 6.7490 -5.8619 1.4388 22 6 7.8486 -5.4047 2.3995 23 8 8.9265 -4.8357 1.6535 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 0.9453 -4.9822 -0.8903 28 1 0.9446 -4.9827 0.8897 29 1 3.3222 -5.7955 -0.8406 30 1 2.1821 -6.9375 -0.0894 31 1 3.7956 -4.9670 1.3946 32 1 4.0148 -9.0310 1.1406 33 1 2.8420 -8.1027 2.1166 34 1 4.8855 -9.6079 3.2272 35 1 4.1958 -8.1600 4.0233 36 1 6.7120 -8.3517 2.2778 37 1 6.5290 -7.5711 3.8815 38 1 6.3850 -5.0065 0.8698 39 1 7.1518 -6.6086 0.7545 40 1 7.4458 -4.6579 3.0838 41 1 8.2126 -6.2602 2.9685 42 1 9.6608 -4.5232 2.1996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339124808.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:27 Heat of formation + Delta-G solvation = -149.743398 kcal Electronic energy + Delta-G solvation = -19426.270378 eV Core-core repulsion = 16403.987999 eV Total energy + Delta-G solvation = -3022.282379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.15329 -38.69765 -37.69594 -35.60936 -34.73041 -33.00215 -30.74822 -28.97437 -27.90768 -26.71341 -24.54118 -23.34025 -22.94381 -20.95770 -20.66440 -18.66465 -18.27759 -17.67935 -17.09535 -16.76821 -16.38101 -16.27567 -15.79792 -15.47628 -15.00128 -14.87670 -14.75454 -14.19985 -14.00491 -13.39191 -13.30617 -13.04843 -12.84133 -12.66920 -12.61471 -12.34092 -12.19215 -11.96228 -11.87773 -11.73236 -11.57891 -11.42374 -11.31431 -11.26020 -10.89136 -10.84854 -10.25024 -9.36085 -8.33590 -6.46054 1.38872 1.40311 1.55000 2.33554 3.00284 3.12085 3.19860 3.32957 3.64338 3.78977 3.98582 4.16618 4.19592 4.31586 4.33674 4.49052 4.51232 4.53906 4.60873 4.65126 4.68425 4.75381 4.79280 4.81117 4.92919 4.94033 5.07977 5.11603 5.16090 5.17211 5.26645 5.30259 5.40247 5.53411 5.53902 5.94210 6.18238 6.41522 6.51670 6.80153 6.89530 7.26005 8.79091 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.004450 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.732459 B = 6291.279612 C = 7564.909763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.211 3.789 10 O -0.409 6.409 11 C 0.055 3.945 12 C 0.076 3.924 13 N -0.687 5.687 14 C 0.083 3.917 15 H 0.042 0.958 16 C -0.114 4.114 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.088 4.088 20 H 0.076 0.924 21 C -0.113 4.113 22 C 0.077 3.923 23 O -0.600 6.600 24 H 0.271 0.729 25 H -0.015 1.015 26 H -0.014 1.014 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.028 0.972 30 H 0.102 0.898 31 H 0.341 0.659 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.670 -17.069 6.522 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.585 4.585 8 H 0.079 0.921 9 C 0.136 3.864 10 O -0.329 6.329 11 C -0.022 4.022 12 C -0.053 4.053 13 N -0.319 5.319 14 C -0.026 4.026 15 H 0.060 0.940 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.107 4.107 20 H 0.094 0.906 21 C -0.150 4.150 22 C 0.000 4.000 23 O -0.408 6.408 24 H 0.080 0.920 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.120 0.880 31 H 0.159 0.841 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 12.863 -17.473 6.365 22.611 hybrid contribution 0.438 1.514 -0.398 1.626 sum 13.301 -15.958 5.967 21.614 Atomic orbital electron populations 1.70076 1.07763 1.28610 1.50517 1.25955 0.95945 1.03360 0.93868 0.85139 0.78601 0.77335 0.78344 1.18939 1.19598 1.19531 1.21401 0.94022 0.90852 1.52233 0.92134 1.19800 0.88574 0.84626 0.93399 1.87755 1.35575 1.14384 1.95210 1.22599 0.96063 0.83860 0.99706 1.21933 0.95001 0.97627 0.90784 1.60755 1.27750 1.08685 1.34707 1.22322 0.90019 0.92629 0.97653 0.94044 1.22195 1.00252 0.95087 0.97701 1.22289 0.95362 1.00631 0.97220 1.22529 0.97415 0.94226 1.00704 1.22071 0.93383 0.98290 0.96981 0.90604 1.21546 0.94933 1.00191 0.98373 1.22230 0.87205 0.97258 0.93326 1.86442 1.32202 1.82527 1.39670 0.92011 0.99743 0.99673 0.93452 0.93794 0.95352 0.87967 0.84110 0.91222 0.91733 0.90254 0.91905 0.90603 0.90195 0.93973 0.91308 0.93528 0.91307 0.75346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.98 45.03 29.54 68.60 2.03 47.06 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -33.28 9.43 25.60 0.24 -33.03 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 12.19 5.69 71.23 0.41 12.59 16 10 O -0.41 -20.46 9.85 -148.98 -1.47 -21.93 16 11 C 0.05 2.13 6.28 71.98 0.45 2.58 16 12 C 0.08 2.34 5.93 86.30 0.51 2.85 16 13 N -0.69 -20.73 6.17 -487.82 -3.01 -23.74 16 14 C 0.08 1.97 2.82 45.64 0.13 2.10 16 15 H 0.04 1.02 7.51 -2.39 -0.02 1.00 16 16 C -0.11 -2.25 6.55 31.32 0.21 -2.04 16 17 C -0.12 -1.87 6.83 31.67 0.22 -1.66 16 18 C -0.11 -1.71 5.51 31.89 0.18 -1.53 16 19 C -0.09 -1.85 2.32 -9.72 -0.02 -1.87 16 20 H 0.08 1.78 7.96 -2.39 -0.02 1.76 16 21 C -0.11 -2.54 4.94 30.60 0.15 -2.39 16 22 C 0.08 1.47 6.89 71.98 0.50 1.96 16 23 O -0.60 -12.75 13.66 -148.98 -2.04 -14.79 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.45 16 25 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.03 0.90 8.07 -2.39 -0.02 0.88 16 30 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.34 11.86 7.88 -89.70 -0.71 11.16 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.44 7.92 -2.39 -0.02 1.42 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.06 8.02 -2.38 -0.02 1.04 16 37 H 0.08 1.02 8.00 -2.39 -0.02 1.01 16 38 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.51 8.10 -2.39 -0.02 1.49 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.98 7.38 -2.39 -0.02 0.96 16 42 H 0.40 4.45 9.12 -74.06 -0.68 3.78 16 Total: -1.00 -69.58 339.96 -1.17 -70.76 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.40 Total: 18.61 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 3.42 Total: -19.56 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -2.72 Total: -80.16 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -3.50 Total: -36.72 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.58 -1.17 -70.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339124808.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.987 kcal (2) G-P(sol) polarization free energy of solvation -69.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds