Wall clock time and date at job start Mon Mar 30 2020 04:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42903 * 109.57179 * 2 1 4 4 C 1.54523 * 109.57351 * 239.75575 * 2 1 3 5 5 C 1.45883 * 111.67183 * 162.83063 * 4 2 1 6 6 C 1.53977 * 112.66784 * 61.49804 * 5 4 2 7 7 N 1.44307 * 108.31042 * 278.59201 * 6 5 4 8 8 C 1.46903 * 110.99783 * 221.34541 * 7 6 5 9 9 C 1.52999 * 109.46906 * 66.05290 * 8 7 6 10 10 O 1.42897 * 109.47558 * 64.99416 * 9 8 7 11 11 C 1.42897 * 114.00045 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47306 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99569 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00442 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00471 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46902 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47018 * 119.99900 * 16 14 12 19 19 H 1.48489 * 109.47783 * 240.00346 * 16 14 12 20 20 C 1.47948 * 113.64238 * 95.40062 * 7 6 5 21 21 C 1.50533 * 109.67766 * 120.31446 * 2 1 3 22 22 H 1.09007 * 109.47171 * 59.99746 * 1 2 3 23 23 H 1.08999 * 109.47256 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47346 * 299.99879 * 1 2 3 25 25 H 0.96700 * 114.00311 * 299.75520 * 3 2 1 26 26 H 1.08997 * 109.04144 * 283.39299 * 4 2 1 27 27 H 1.09003 * 109.04111 * 42.27132 * 4 2 1 28 28 H 1.09000 * 108.84083 * 182.31693 * 5 4 2 29 29 H 1.08994 * 108.84349 * 300.78103 * 5 4 2 30 30 H 1.08994 * 109.69984 * 38.29959 * 6 5 4 31 31 H 1.09003 * 109.69648 * 158.89194 * 6 5 4 32 32 H 1.09009 * 109.46818 * 186.04777 * 8 7 6 33 33 H 1.08997 * 109.47637 * 306.04693 * 8 7 6 34 34 H 1.08997 * 109.47050 * 184.99886 * 9 8 7 35 35 H 1.08997 * 109.46892 * 304.99144 * 9 8 7 36 36 H 1.08996 * 109.47386 * 300.00398 * 11 10 9 37 37 H 1.09006 * 109.46805 * 60.00590 * 11 10 9 38 38 H 0.96993 * 120.00308 * 179.97438 * 15 14 12 39 39 H 1.08996 * 108.70778 * 79.13076 * 20 7 6 40 40 H 1.08995 * 108.70667 * 197.14094 * 20 7 6 41 41 H 1.08996 * 108.78931 * 332.52005 * 21 2 1 42 42 H 1.08999 * 108.79054 * 90.73326 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0086 1.3465 0.0000 4 6 2.0476 -0.7333 -1.2578 5 6 3.4485 -0.4247 -1.5230 6 6 4.3800 -0.8643 -0.3784 7 7 4.3383 0.1443 0.6528 8 6 5.6795 0.3974 1.1961 9 6 6.5594 1.0221 0.1115 10 8 6.0440 2.3083 -0.2380 11 6 6.7976 2.9815 -1.2484 12 6 6.1683 4.3203 -1.5362 13 1 5.2818 4.6265 -1.0006 14 6 6.7242 5.1541 -2.4830 15 7 7.8034 4.7810 -3.1355 16 14 5.9438 6.8132 -2.8403 17 1 4.7477 6.9934 -1.9787 18 1 6.9239 7.8924 -2.5576 19 1 5.5396 6.8732 -4.2678 20 6 3.3753 -0.1539 1.7357 21 6 2.0368 -0.7154 1.2236 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.7273 1.8640 -0.7669 26 1 1.9419 -1.8083 -1.1114 27 1 1.4483 -0.4320 -2.1170 28 1 3.7532 -0.9309 -2.4389 29 1 3.5512 0.6511 -1.6649 30 1 4.0402 -1.8177 0.0262 31 1 5.3989 -0.9655 -0.7522 32 1 5.6057 1.0807 2.0423 33 1 6.1215 -0.5428 1.5258 34 1 7.5775 1.1282 0.4860 35 1 6.5614 0.3800 -0.7692 36 1 7.8204 3.1282 -0.9016 37 1 6.8048 2.3801 -2.1575 38 1 8.1943 5.3674 -3.8019 39 1 3.8239 -0.8814 2.4120 40 1 3.1800 0.7629 2.2920 41 1 1.2930 -0.6268 2.0154 42 1 2.1675 -1.7708 0.9844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339143411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:37 Heat of formation + Delta-G solvation = -94.242061 kcal Electronic energy + Delta-G solvation = -20689.362294 eV Core-core repulsion = 17669.486633 eV Total energy + Delta-G solvation = -3019.875660 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69573 -37.12694 -35.69052 -33.16551 -32.57682 -32.18986 -29.90791 -27.72483 -26.57978 -25.51965 -23.32512 -22.18920 -21.35464 -20.03596 -19.38605 -16.32497 -16.29756 -16.11227 -15.72065 -15.28638 -14.68930 -14.44668 -14.26437 -13.65048 -13.47777 -13.25344 -13.22241 -12.81533 -12.51800 -12.21266 -12.01083 -11.77400 -11.46520 -11.31079 -10.93633 -10.84052 -10.73662 -10.68502 -10.55000 -10.37139 -10.22261 -10.19366 -9.83645 -9.45525 -8.94744 -8.67304 -7.99408 -7.60843 -6.01273 -4.01196 3.34965 3.41263 3.48773 4.18208 4.43172 4.44537 4.81125 4.82962 4.96823 5.02312 5.22574 5.32209 5.33688 5.35305 5.46041 5.59219 5.62721 5.68136 5.71092 5.78031 5.90425 5.92896 5.96831 6.08882 6.14386 6.21045 6.23405 6.27014 6.40580 6.45279 6.47509 6.84685 7.24069 7.54111 7.57382 7.73403 7.92201 8.13057 8.29588 8.77060 9.15788 9.63469 11.10659 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.005559 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.605068 B = 5035.467971 C = 5669.717446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.137 3.863 3 O -0.522 6.522 4 C -0.136 4.136 5 C -0.116 4.116 6 C 0.066 3.934 7 N -0.515 5.515 8 C 0.065 3.935 9 C 0.068 3.932 10 O -0.373 6.373 11 C 0.194 3.806 12 C -0.504 4.504 13 H 0.067 0.933 14 C 0.054 3.946 15 N -0.902 5.902 16 Si 0.905 3.095 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.083 3.917 21 C -0.106 4.106 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.368 0.632 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.028 0.972 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.031 0.969 34 H 0.034 0.966 35 H 0.034 0.966 36 H -0.001 1.001 37 H 0.001 0.999 38 H 0.261 0.739 39 H 0.018 0.982 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.481 -13.844 6.486 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.096 3.904 3 O -0.326 6.326 4 C -0.173 4.173 5 C -0.154 4.154 6 C -0.062 4.062 7 N -0.239 5.239 8 C -0.062 4.062 9 C -0.010 4.010 10 O -0.293 6.293 11 C 0.119 3.881 12 C -0.542 4.542 13 H 0.086 0.914 14 C -0.147 4.147 15 N -0.542 5.542 16 Si 0.733 3.267 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.044 4.044 21 C -0.144 4.144 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.214 0.786 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.071 0.929 39 H 0.036 0.964 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.414 -13.493 6.795 18.935 hybrid contribution -0.027 0.065 -0.680 0.683 sum -11.441 -13.428 6.115 18.671 Atomic orbital electron populations 1.22570 0.96656 1.01911 1.02325 1.20773 0.90920 0.84463 0.94275 1.86843 1.76493 1.21258 1.48027 1.21238 0.97970 0.99972 0.98151 1.20392 0.93711 1.04415 0.96904 1.21761 0.99520 0.91878 0.93055 1.60439 1.06378 1.44993 1.12130 1.22089 0.88562 0.97867 0.97705 1.22283 0.94726 0.88002 0.95997 1.87980 1.54093 1.27697 1.59494 1.20145 0.90873 0.91794 0.85248 1.21117 1.12231 1.00292 1.20593 0.91435 1.24943 0.95113 0.98796 0.95817 1.69981 1.21098 1.37339 1.25788 0.86323 0.79319 0.83121 0.77987 1.19447 1.21001 1.20995 1.22017 0.91068 0.99202 0.92136 1.21415 0.97207 0.98660 0.97079 0.92445 0.92291 0.92034 0.78612 0.92618 0.92375 0.93046 0.89217 0.95367 0.91564 0.90472 0.95087 0.94752 0.94759 0.98292 0.98112 0.92915 0.96431 0.90843 0.91399 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 8.54 37.15 0.32 -1.39 16 2 C 0.14 1.63 0.98 -91.06 -0.09 1.54 16 3 O -0.52 -7.83 10.04 -35.23 -0.35 -8.18 16 4 C -0.14 -1.58 4.58 -29.30 -0.13 -1.72 16 5 C -0.12 -1.65 5.19 -29.59 -0.15 -1.80 16 6 C 0.07 0.96 5.07 -4.70 -0.02 0.93 16 7 N -0.51 -8.19 3.27 -234.63 -0.77 -8.96 16 8 C 0.07 1.06 5.20 -3.82 -0.02 1.04 16 9 C 0.07 1.33 5.98 37.16 0.22 1.56 16 10 O -0.37 -9.41 10.27 -35.23 -0.36 -9.77 16 11 C 0.19 5.50 5.69 36.01 0.20 5.70 16 12 C -0.50 -15.22 9.43 -34.44 -0.32 -15.54 16 13 H 0.07 2.05 7.81 -52.48 -0.41 1.64 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 16 Si 0.90 22.32 29.54 -169.99 -5.02 17.29 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C 0.08 1.13 4.79 -2.77 -0.01 1.12 16 21 C -0.11 -1.22 4.77 -27.48 -0.13 -1.35 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 25 H 0.37 4.81 9.06 45.56 0.41 5.22 16 26 H 0.06 0.59 7.59 -51.93 -0.39 0.19 16 27 H 0.06 0.63 8.02 -51.93 -0.42 0.22 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.59 7.30 -51.93 -0.38 1.21 16 30 H 0.03 0.36 6.79 -51.93 -0.35 0.01 16 31 H 0.07 0.99 5.86 -51.93 -0.30 0.68 16 32 H 0.08 1.28 8.04 -51.92 -0.42 0.87 16 33 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.03 0.66 6.28 -51.93 -0.33 0.33 16 36 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 37 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.02 0.22 8.02 -51.93 -0.42 -0.20 16 40 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.07 0.69 7.70 -51.93 -0.40 0.29 16 42 H 0.06 0.66 6.66 -51.93 -0.35 0.31 16 LS Contribution 324.05 15.07 4.88 4.88 Total: -1.00 -32.67 324.05 -7.81 -40.48 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.69 Total: -0.48 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.24 Total: -8.42 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.03 Total: -35.81 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.72 Total: -17.95 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.67 -7.81 -40.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339143411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.761 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds