Wall clock time and date at job start Mon Mar 30 2020 04:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42903 * 109.57179 * 2 1 4 4 C 1.54523 * 109.57351 * 239.75575 * 2 1 3 5 5 C 1.45883 * 111.67183 * 162.83063 * 4 2 1 6 6 C 1.53977 * 112.66784 * 61.49804 * 5 4 2 7 7 N 1.44307 * 108.31042 * 278.59201 * 6 5 4 8 8 C 1.46903 * 110.99783 * 221.34541 * 7 6 5 9 9 C 1.52999 * 109.46906 * 66.05290 * 8 7 6 10 10 O 1.42897 * 109.47558 * 64.99416 * 9 8 7 11 11 C 1.42897 * 114.00045 * 179.97438 * 10 9 8 12 12 C 1.50701 * 109.47306 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99569 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00442 * 180.02562 * 12 11 10 15 15 N 1.31519 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00471 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46902 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47018 * 119.99900 * 16 14 12 19 19 H 1.48489 * 109.47783 * 240.00346 * 16 14 12 20 20 C 1.47948 * 113.64238 * 95.40062 * 7 6 5 21 21 C 1.50533 * 109.67766 * 120.31446 * 2 1 3 22 22 H 1.09007 * 109.47171 * 59.99746 * 1 2 3 23 23 H 1.08999 * 109.47256 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47346 * 299.99879 * 1 2 3 25 25 H 0.96700 * 114.00311 * 299.75520 * 3 2 1 26 26 H 1.08997 * 109.04144 * 283.39299 * 4 2 1 27 27 H 1.09003 * 109.04111 * 42.27132 * 4 2 1 28 28 H 1.09000 * 108.84083 * 182.31693 * 5 4 2 29 29 H 1.08994 * 108.84349 * 300.78103 * 5 4 2 30 30 H 1.08994 * 109.69984 * 38.29959 * 6 5 4 31 31 H 1.09003 * 109.69648 * 158.89194 * 6 5 4 32 32 H 1.09009 * 109.46818 * 186.04777 * 8 7 6 33 33 H 1.08997 * 109.47637 * 306.04693 * 8 7 6 34 34 H 1.08997 * 109.47050 * 184.99886 * 9 8 7 35 35 H 1.08997 * 109.46892 * 304.99144 * 9 8 7 36 36 H 1.08996 * 109.47386 * 300.00398 * 11 10 9 37 37 H 1.09006 * 109.46805 * 60.00590 * 11 10 9 38 38 H 0.96993 * 120.00308 * 179.97438 * 15 14 12 39 39 H 1.08996 * 108.70778 * 79.13076 * 20 7 6 40 40 H 1.08995 * 108.70667 * 197.14094 * 20 7 6 41 41 H 1.08996 * 108.78931 * 332.52005 * 21 2 1 42 42 H 1.08999 * 108.79054 * 90.73326 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0086 1.3465 0.0000 4 6 2.0476 -0.7333 -1.2578 5 6 3.4485 -0.4247 -1.5230 6 6 4.3800 -0.8643 -0.3784 7 7 4.3383 0.1443 0.6528 8 6 5.6795 0.3974 1.1961 9 6 6.5594 1.0221 0.1115 10 8 6.0440 2.3083 -0.2380 11 6 6.7976 2.9815 -1.2484 12 6 6.1683 4.3203 -1.5362 13 1 5.2818 4.6265 -1.0006 14 6 6.7242 5.1541 -2.4830 15 7 7.8034 4.7810 -3.1355 16 14 5.9438 6.8132 -2.8403 17 1 4.7477 6.9934 -1.9787 18 1 6.9239 7.8924 -2.5576 19 1 5.5396 6.8732 -4.2678 20 6 3.3753 -0.1539 1.7357 21 6 2.0368 -0.7154 1.2236 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.7273 1.8640 -0.7669 26 1 1.9419 -1.8083 -1.1114 27 1 1.4483 -0.4320 -2.1170 28 1 3.7532 -0.9309 -2.4389 29 1 3.5512 0.6511 -1.6649 30 1 4.0402 -1.8177 0.0262 31 1 5.3989 -0.9655 -0.7522 32 1 5.6057 1.0807 2.0423 33 1 6.1215 -0.5428 1.5258 34 1 7.5775 1.1282 0.4860 35 1 6.5614 0.3800 -0.7692 36 1 7.8204 3.1282 -0.9016 37 1 6.8048 2.3801 -2.1575 38 1 8.1943 5.3674 -3.8019 39 1 3.8239 -0.8814 2.4120 40 1 3.1800 0.7629 2.2920 41 1 1.2930 -0.6268 2.0154 42 1 2.1675 -1.7708 0.9844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339143411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:36 Heat of formation + Delta-G solvation = -117.704868 kcal Electronic energy + Delta-G solvation = -20690.379717 eV Core-core repulsion = 17669.486633 eV Total energy + Delta-G solvation = -3020.893084 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74837 -38.70859 -37.20165 -34.90414 -34.19193 -33.23492 -31.23648 -29.34377 -28.18060 -26.71254 -24.47845 -24.29376 -22.74680 -21.09746 -20.45734 -18.58345 -17.57768 -17.37270 -17.14358 -16.72921 -16.20797 -16.03611 -15.73677 -15.03045 -14.78431 -14.60101 -14.35533 -14.07485 -13.82980 -13.55155 -13.12586 -13.07955 -12.98182 -12.73383 -12.68449 -12.63151 -12.21369 -11.96350 -11.87865 -11.74976 -11.53155 -11.41281 -11.18424 -11.14918 -10.82173 -10.43974 -10.10865 -8.76330 -8.29009 -6.40210 1.40315 1.41973 1.57232 2.37355 3.01883 3.04455 3.30975 3.49585 3.88903 3.94744 4.04431 4.14297 4.20250 4.29532 4.36648 4.42965 4.53264 4.60097 4.64389 4.69312 4.79096 4.82492 4.86551 4.92692 4.93811 5.03566 5.07208 5.15661 5.21759 5.22944 5.28657 5.45507 5.47903 5.59456 5.66899 6.02035 6.35449 6.58391 6.64074 6.92811 7.13630 7.32254 8.83797 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.005559 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.605068 B = 5035.467971 C = 5669.717446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 O -0.551 6.551 4 C -0.132 4.132 5 C -0.111 4.111 6 C 0.067 3.933 7 N -0.539 5.539 8 C 0.073 3.927 9 C 0.060 3.940 10 O -0.389 6.389 11 C 0.211 3.789 12 C -0.538 4.538 13 H 0.058 0.942 14 C 0.005 3.995 15 N -0.933 5.933 16 Si 0.982 3.018 17 H -0.265 1.265 18 H -0.271 1.271 19 H -0.271 1.271 20 C 0.083 3.917 21 C -0.106 4.106 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.370 0.630 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.036 0.964 36 H -0.020 1.020 37 H -0.021 1.021 38 H 0.270 0.730 39 H 0.036 0.964 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.946 -14.608 6.794 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.090 3.910 3 O -0.356 6.356 4 C -0.170 4.170 5 C -0.149 4.149 6 C -0.061 4.061 7 N -0.265 5.265 8 C -0.054 4.054 9 C -0.018 4.018 10 O -0.308 6.308 11 C 0.136 3.864 12 C -0.576 4.576 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.573 5.573 16 Si 0.805 3.195 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.196 1.196 20 C -0.044 4.044 21 C -0.144 4.144 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.216 0.784 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.054 0.946 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.882 -14.286 7.115 20.510 hybrid contribution 0.479 0.227 -0.763 0.929 sum -12.403 -14.059 6.352 19.795 Atomic orbital electron populations 1.22478 0.94725 1.03124 1.02364 1.20997 0.92397 0.83058 0.94543 1.86814 1.77333 1.23026 1.48405 1.21196 0.96112 1.01194 0.98462 1.20337 0.95707 1.01559 0.97319 1.21768 0.99064 0.92573 0.92704 1.60331 1.06397 1.46393 1.13330 1.21984 0.88810 0.98785 0.95849 1.22623 0.96056 0.85730 0.97348 1.87943 1.54208 1.30212 1.58436 1.19746 0.90048 0.91535 0.85078 1.21376 1.12667 1.01673 1.21874 0.92344 1.25944 0.95376 1.03033 0.94884 1.70084 1.22131 1.39107 1.25980 0.85153 0.78536 0.77512 0.78309 1.18936 1.19654 1.19573 1.22018 0.91834 0.98827 0.91680 1.21481 0.96200 0.99345 0.97341 0.92202 0.90402 0.92278 0.78371 0.90456 0.91772 0.92612 0.93518 0.92909 0.92627 0.91167 0.91771 0.94031 0.94571 1.00273 1.00297 0.92159 0.94626 0.93016 0.89943 0.90027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 8.54 71.98 0.62 -2.27 16 2 C 0.13 2.90 0.98 -11.08 -0.01 2.89 16 3 O -0.55 -16.70 10.04 -148.98 -1.50 -18.19 16 4 C -0.13 -2.85 4.58 28.93 0.13 -2.71 16 5 C -0.11 -3.12 5.19 28.74 0.15 -2.97 16 6 C 0.07 1.86 5.07 87.12 0.44 2.30 16 7 N -0.54 -16.87 3.27 -896.23 -2.93 -19.80 16 8 C 0.07 2.35 5.20 86.30 0.45 2.80 16 9 C 0.06 2.39 5.98 71.98 0.43 2.82 16 10 O -0.39 -20.34 10.27 -148.98 -1.53 -21.87 16 11 C 0.21 12.51 5.69 71.24 0.41 12.91 16 12 C -0.54 -33.44 9.43 25.60 0.24 -33.20 16 13 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 14 C 0.01 0.33 5.46 84.65 0.46 0.79 16 15 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 16 Si 0.98 45.81 29.54 68.60 2.03 47.83 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 C 0.08 2.15 4.79 86.41 0.41 2.57 16 21 C -0.11 -2.18 4.77 30.11 0.14 -2.03 16 22 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 23 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.06 1.04 8.09 -2.39 -0.02 1.02 16 25 H 0.37 10.12 9.06 -74.06 -0.67 9.45 16 26 H 0.08 1.36 7.59 -2.39 -0.02 1.34 16 27 H 0.06 1.30 8.02 -2.39 -0.02 1.28 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.72 7.30 -2.39 -0.02 1.70 16 30 H 0.05 1.20 6.79 -2.39 -0.02 1.18 16 31 H 0.06 1.63 5.86 -2.39 -0.01 1.61 16 32 H 0.07 2.33 8.04 -2.38 -0.02 2.31 16 33 H 0.06 1.64 8.12 -2.39 -0.02 1.62 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 1.43 6.28 -2.39 -0.02 1.42 16 36 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 37 H -0.02 -1.28 8.14 -2.38 -0.02 -1.30 16 38 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.04 0.79 8.02 -2.39 -0.02 0.77 16 40 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 1.46 7.70 -2.39 -0.02 1.44 16 42 H 0.08 1.38 6.66 -2.39 -0.02 1.37 16 Total: -1.00 -71.45 324.05 0.54 -70.91 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.31 Total: 14.63 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.87 Total: -16.11 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.65 Total: -77.20 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -3.03 Total: -40.07 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.45 0.54 -70.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339143411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.794 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds