Wall clock time and date at job start Mon Mar 30 2020 04:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00079 * 2 1 4 4 C 1.50701 * 110.45489 * 300.92527 * 3 2 1 5 5 O 1.21276 * 120.00465 * 145.81901 * 4 3 2 6 6 N 1.34785 * 119.99732 * 325.53897 * 4 3 2 7 7 C 1.46497 * 119.99911 * 175.40557 * 6 4 3 8 8 C 1.52998 * 109.47387 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47643 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47505 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99569 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00508 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99450 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00451 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47232 * 90.00224 * 14 12 10 16 16 H 1.48497 * 109.47181 * 210.00581 * 14 12 10 17 17 H 1.48504 * 109.46877 * 330.00638 * 14 12 10 18 18 C 1.54509 * 110.62970 * 178.23909 * 3 2 1 19 19 C 1.54475 * 104.06452 * 241.29194 * 18 3 2 20 20 O 1.44430 * 104.80213 * 336.02609 * 19 18 3 21 21 C 1.44417 * 105.27655 * 40.50918 * 20 19 18 22 22 H 1.08996 * 109.47170 * 295.16259 * 1 2 3 23 23 H 1.09003 * 109.46780 * 55.16656 * 1 2 3 24 24 H 1.08995 * 109.46583 * 175.16555 * 1 2 3 25 25 H 0.96993 * 120.00165 * 355.40634 * 6 4 3 26 26 H 1.09002 * 109.47081 * 300.00420 * 7 6 4 27 27 H 1.08999 * 109.47310 * 59.99759 * 7 6 4 28 28 H 1.09004 * 109.46562 * 300.00316 * 8 7 6 29 29 H 1.08999 * 109.47436 * 59.99415 * 8 7 6 30 30 H 1.09002 * 109.47013 * 300.00114 * 9 8 7 31 31 H 1.09005 * 109.47011 * 59.99687 * 9 8 7 32 32 H 0.97005 * 119.99769 * 179.97438 * 13 12 10 33 33 H 1.08995 * 110.50911 * 359.94098 * 18 3 2 34 34 H 1.09003 * 110.50957 * 122.65345 * 18 3 2 35 35 H 1.09000 * 110.37801 * 217.19023 * 19 18 3 36 36 H 1.09000 * 110.46519 * 94.89959 * 19 18 3 37 37 H 1.09009 * 110.36933 * 200.66090 * 21 20 19 38 38 H 1.09000 * 110.46998 * 78.36988 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5616 2.0817 -1.2113 5 8 1.3923 3.2801 -1.1350 6 7 1.3539 1.4448 -2.3809 7 6 0.8217 2.1801 -3.5308 8 6 0.6817 1.2310 -4.7226 9 6 0.1253 1.9987 -5.9234 10 6 -0.0121 1.0640 -7.0975 11 1 0.2690 0.0261 -6.9971 12 6 -0.4974 1.5336 -8.2995 13 7 -0.8401 2.7974 -8.4216 14 14 -0.6684 0.3748 -9.7546 15 1 -2.0169 -0.2466 -9.7368 16 1 -0.4907 1.1361 -11.0171 17 1 0.3668 -0.6863 -9.6665 18 6 3.5521 1.2148 0.0444 19 6 3.9322 1.9277 1.3611 20 8 2.8261 2.8160 1.6324 21 6 1.6413 2.0623 1.2951 22 1 -0.3633 0.4369 0.9301 23 1 -0.3633 0.5870 -0.8436 24 1 -0.3632 -1.0240 -0.0866 25 1 1.5567 0.4998 -2.4612 26 1 -0.1553 2.5921 -3.2781 27 1 1.5021 2.9913 -3.7899 28 1 1.6585 0.8187 -4.9754 29 1 0.0011 0.4200 -4.4633 30 1 -0.8516 2.4107 -5.6703 31 1 0.8056 2.8099 -6.1829 32 1 -1.1813 3.1279 -9.2674 33 1 3.8729 0.1734 0.0675 34 1 3.9898 1.7316 -0.8097 35 1 4.8530 2.4966 1.2325 36 1 4.0440 1.2036 2.1680 37 1 0.8022 2.7346 1.1157 38 1 1.3986 1.3575 2.0904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352434591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:16 Heat of formation + Delta-G solvation = -136.489359 kcal Electronic energy + Delta-G solvation = -19556.521382 eV Core-core repulsion = 16398.980647 eV Total energy + Delta-G solvation = -3157.540735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00471 -38.50760 -37.36841 -35.47381 -33.32855 -31.94464 -31.11467 -29.19470 -26.98958 -26.91910 -24.11898 -22.87511 -22.10839 -20.73480 -19.77981 -18.12656 -17.23245 -16.49328 -16.15047 -15.68603 -15.57528 -15.18508 -14.92935 -14.56900 -14.43314 -14.15144 -13.86539 -13.27957 -12.82265 -12.32561 -12.20150 -11.97798 -11.86341 -11.74667 -11.53815 -11.47596 -10.92878 -10.78454 -10.63358 -10.56865 -10.04649 -9.91123 -9.74081 -9.32571 -9.13131 -8.85338 -8.39895 -6.04403 -4.07721 2.49478 2.98847 3.26858 3.29042 3.35633 3.38545 3.80230 4.22680 4.35723 4.42081 4.58802 4.79770 4.86938 5.05873 5.09158 5.22366 5.31453 5.36785 5.41808 5.46224 5.48938 5.61537 5.64540 5.70848 6.09652 6.36610 6.39627 6.53813 6.63724 6.78925 6.95018 7.59287 7.60086 7.71967 7.93915 8.21714 8.35216 8.98860 9.56695 11.06881 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.041899 B = 0.003658 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.114451 B = 7653.109130 C = 7839.907414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.363 6.363 3 C 0.065 3.935 4 C 0.494 3.506 5 O -0.526 6.526 6 N -0.717 5.717 7 C 0.114 3.886 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.523 4.523 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.137 4.137 19 C 0.045 3.955 20 O -0.358 6.358 21 C 0.041 3.959 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.096 0.904 25 H 0.403 0.597 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.261 0.739 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 -6.190 19.605 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.282 6.282 3 C 0.022 3.978 4 C 0.277 3.723 5 O -0.402 6.402 6 N -0.368 5.368 7 C -0.008 4.008 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.561 4.561 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.175 4.175 19 C -0.031 4.031 20 O -0.276 6.276 21 C -0.037 4.037 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.115 0.885 25 H 0.238 0.762 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.313 -5.130 19.593 21.214 hybrid contribution -0.315 -1.085 -1.107 1.582 sum 5.997 -6.215 18.485 20.404 Atomic orbital electron populations 1.22992 0.80088 1.03826 1.01097 1.87988 1.20642 1.24737 1.94830 1.23263 0.95948 0.84165 0.94432 1.20762 0.78306 0.88300 0.84921 1.90750 1.50616 1.14143 1.84733 1.46271 1.65049 1.14104 1.11403 1.21711 0.98683 0.95744 0.84688 1.21889 1.01049 0.98088 0.94790 1.19031 0.96288 0.95475 0.90579 1.21194 1.43135 0.95913 0.95900 0.92631 1.25028 0.95431 0.95108 0.98878 1.69967 1.43762 1.13825 1.25702 0.86574 0.78443 0.80816 0.82044 1.20648 1.21183 1.19870 1.22926 0.90668 1.03723 1.00212 1.23459 0.91561 0.93183 0.94937 1.89214 1.14605 1.36749 1.87019 1.23822 0.90621 0.95655 0.93553 0.93473 0.92814 0.88538 0.76211 0.91749 0.91558 0.92649 0.92702 0.96295 0.96252 0.92901 0.88006 0.89088 0.88363 0.91585 0.87790 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.40 101.05 1.05 1.20 16 2 O -0.36 -3.84 9.75 -35.23 -0.34 -4.18 16 3 C 0.07 0.77 1.04 -90.20 -0.09 0.67 16 4 C 0.49 7.41 5.36 -10.98 -0.06 7.35 16 5 O -0.53 -9.93 15.93 5.56 0.09 -9.84 16 6 N -0.72 -10.40 4.68 -60.30 -0.28 -10.68 16 7 C 0.11 1.99 5.68 -4.04 -0.02 1.97 16 8 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 11 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 14 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.14 -1.34 6.53 -25.17 -0.16 -1.50 16 19 C 0.05 0.42 7.63 37.93 0.29 0.71 16 20 O -0.36 -4.59 11.65 -35.23 -0.41 -5.00 16 21 C 0.04 0.48 5.52 37.93 0.21 0.69 16 22 H 0.05 0.38 7.36 -51.93 -0.38 -0.01 16 23 H 0.05 0.58 6.51 -51.93 -0.34 0.24 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.40 5.05 8.02 -40.82 -0.33 4.72 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.10 0.80 8.00 -51.93 -0.42 0.39 16 34 H 0.09 0.94 7.73 -51.93 -0.40 0.54 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.10 1.31 7.37 -51.92 -0.38 0.92 16 38 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -32.60 315.37 -5.97 -38.57 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.00 Total: 0.24 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 0.52 Total: -4.23 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.45 Total: -36.64 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.67 Total: -19.03 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.60 -5.97 -38.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352434591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.919 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds