Wall clock time and date at job start Mon Mar 30 2020 04:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00079 * 2 1 4 4 C 1.50701 * 110.45489 * 300.92527 * 3 2 1 5 5 O 1.21276 * 120.00465 * 145.81901 * 4 3 2 6 6 N 1.34785 * 119.99732 * 325.53897 * 4 3 2 7 7 C 1.46497 * 119.99911 * 175.40557 * 6 4 3 8 8 C 1.52998 * 109.47387 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47643 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47505 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99569 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00508 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99450 * 0.02562 * 12 10 9 14 14 Si 1.86791 * 120.00451 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47232 * 90.00224 * 14 12 10 16 16 H 1.48497 * 109.47181 * 210.00581 * 14 12 10 17 17 H 1.48504 * 109.46877 * 330.00638 * 14 12 10 18 18 C 1.54509 * 110.62970 * 178.23909 * 3 2 1 19 19 C 1.54475 * 104.06452 * 241.29194 * 18 3 2 20 20 O 1.44430 * 104.80213 * 336.02609 * 19 18 3 21 21 C 1.44417 * 105.27655 * 40.50918 * 20 19 18 22 22 H 1.08996 * 109.47170 * 295.16259 * 1 2 3 23 23 H 1.09003 * 109.46780 * 55.16656 * 1 2 3 24 24 H 1.08995 * 109.46583 * 175.16555 * 1 2 3 25 25 H 0.96993 * 120.00165 * 355.40634 * 6 4 3 26 26 H 1.09002 * 109.47081 * 300.00420 * 7 6 4 27 27 H 1.08999 * 109.47310 * 59.99759 * 7 6 4 28 28 H 1.09004 * 109.46562 * 300.00316 * 8 7 6 29 29 H 1.08999 * 109.47436 * 59.99415 * 8 7 6 30 30 H 1.09002 * 109.47013 * 300.00114 * 9 8 7 31 31 H 1.09005 * 109.47011 * 59.99687 * 9 8 7 32 32 H 0.97005 * 119.99769 * 179.97438 * 13 12 10 33 33 H 1.08995 * 110.50911 * 359.94098 * 18 3 2 34 34 H 1.09003 * 110.50957 * 122.65345 * 18 3 2 35 35 H 1.09000 * 110.37801 * 217.19023 * 19 18 3 36 36 H 1.09000 * 110.46519 * 94.89959 * 19 18 3 37 37 H 1.09009 * 110.36933 * 200.66090 * 21 20 19 38 38 H 1.09000 * 110.46998 * 78.36988 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5616 2.0817 -1.2113 5 8 1.3923 3.2801 -1.1350 6 7 1.3539 1.4448 -2.3809 7 6 0.8217 2.1801 -3.5308 8 6 0.6817 1.2310 -4.7226 9 6 0.1253 1.9987 -5.9234 10 6 -0.0121 1.0640 -7.0975 11 1 0.2690 0.0261 -6.9971 12 6 -0.4974 1.5336 -8.2995 13 7 -0.8401 2.7974 -8.4216 14 14 -0.6684 0.3748 -9.7546 15 1 -2.0169 -0.2466 -9.7368 16 1 -0.4907 1.1361 -11.0171 17 1 0.3668 -0.6863 -9.6665 18 6 3.5521 1.2148 0.0444 19 6 3.9322 1.9277 1.3611 20 8 2.8261 2.8160 1.6324 21 6 1.6413 2.0623 1.2951 22 1 -0.3633 0.4369 0.9301 23 1 -0.3633 0.5870 -0.8436 24 1 -0.3632 -1.0240 -0.0866 25 1 1.5567 0.4998 -2.4612 26 1 -0.1553 2.5921 -3.2781 27 1 1.5021 2.9913 -3.7899 28 1 1.6585 0.8187 -4.9754 29 1 0.0011 0.4200 -4.4633 30 1 -0.8516 2.4107 -5.6703 31 1 0.8056 2.8099 -6.1829 32 1 -1.1813 3.1279 -9.2674 33 1 3.8729 0.1734 0.0675 34 1 3.9898 1.7316 -0.8097 35 1 4.8530 2.4966 1.2325 36 1 4.0440 1.2036 2.1680 37 1 0.8022 2.7346 1.1157 38 1 1.3986 1.3575 2.0904 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352434591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:16 Heat of formation + Delta-G solvation = -160.824376 kcal Electronic energy + Delta-G solvation = -19557.576627 eV Core-core repulsion = 16398.980647 eV Total energy + Delta-G solvation = -3158.595981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.01809 -39.61371 -38.23881 -37.02615 -35.21407 -33.16996 -32.55583 -30.05131 -28.71096 -27.72645 -25.66045 -23.99124 -23.21547 -22.36874 -20.97731 -19.18930 -18.57996 -18.05402 -17.16198 -16.88653 -16.80302 -16.45059 -16.15891 -15.86671 -15.51800 -15.38222 -15.01452 -14.33975 -14.21266 -13.79422 -13.76022 -13.50744 -12.95597 -12.76957 -12.72817 -12.58382 -12.46421 -12.38188 -12.20493 -11.71651 -11.64614 -11.42662 -11.24042 -10.88575 -10.56701 -10.53123 -10.19155 -8.20711 -6.32424 1.30687 1.41483 1.42754 1.53808 1.90566 2.34299 2.41708 3.00299 3.13243 3.35655 3.40433 3.64205 4.06224 4.09435 4.14465 4.17365 4.30629 4.39044 4.43496 4.49693 4.55639 4.73934 4.77175 4.79942 4.88352 4.88891 4.91765 5.12634 5.32004 5.49382 5.58302 5.67336 5.82077 5.82984 6.20329 6.41682 6.84847 7.03296 7.37436 8.91417 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.041899 B = 0.003658 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.114451 B = 7653.109130 C = 7839.907414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.358 6.358 3 C 0.072 3.928 4 C 0.493 3.507 5 O -0.570 6.570 6 N -0.705 5.705 7 C 0.128 3.872 8 C -0.101 4.101 9 C 0.024 3.976 10 C -0.542 4.542 11 H 0.067 0.933 12 C -0.003 4.003 13 N -0.935 5.935 14 Si 0.968 3.032 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.260 1.260 18 C -0.136 4.136 19 C 0.042 3.958 20 O -0.387 6.387 21 C 0.042 3.958 22 H 0.059 0.941 23 H 0.034 0.966 24 H 0.119 0.881 25 H 0.416 0.584 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.069 0.931 30 H -0.007 1.007 31 H -0.009 1.009 32 H 0.263 0.737 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.193 -8.849 20.403 23.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.276 6.276 3 C 0.028 3.972 4 C 0.278 3.722 5 O -0.449 6.449 6 N -0.357 5.357 7 C 0.004 3.996 8 C -0.138 4.138 9 C -0.014 4.014 10 C -0.579 4.579 11 H 0.085 0.915 12 C -0.200 4.200 13 N -0.575 5.575 14 Si 0.792 3.208 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.184 1.184 18 C -0.173 4.173 19 C -0.034 4.034 20 O -0.306 6.306 21 C -0.036 4.036 22 H 0.078 0.922 23 H 0.053 0.947 24 H 0.138 0.862 25 H 0.253 0.747 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.011 0.989 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.112 -7.836 20.408 22.988 hybrid contribution -0.572 -0.231 -1.324 1.461 sum 6.540 -8.067 19.084 21.727 Atomic orbital electron populations 1.23164 0.79382 1.05086 1.00987 1.88008 1.21365 1.23596 1.94659 1.23176 0.97305 0.84243 0.92455 1.21462 0.77038 0.88000 0.85683 1.90730 1.52452 1.16304 1.85457 1.46053 1.64625 1.14501 1.10559 1.21302 0.97916 0.95114 0.85251 1.21591 1.01496 0.97780 0.92982 1.18942 0.94613 0.95091 0.92749 1.21669 1.42799 0.96710 0.96772 0.91521 1.26021 0.94998 0.96767 1.02259 1.70113 1.44812 1.15994 1.26616 0.85408 0.78947 0.78651 0.77808 1.19759 1.21068 1.18408 1.22998 0.88840 1.05237 1.00267 1.23710 0.90898 0.93440 0.95369 1.89181 1.15807 1.38429 1.87221 1.23855 0.89956 0.95626 0.94165 0.92216 0.94711 0.86249 0.74666 0.92894 0.93209 0.91476 0.91211 0.98864 0.99025 0.92797 0.85516 0.90070 0.87212 0.88962 0.89688 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.40 113.37 1.18 1.33 16 2 O -0.36 -6.60 9.75 -148.98 -1.45 -8.05 16 3 C 0.07 1.57 1.04 -10.52 -0.01 1.55 16 4 C 0.49 14.66 5.36 87.66 0.47 15.13 16 5 O -0.57 -22.10 15.93 -3.02 -0.05 -22.15 16 6 N -0.71 -20.00 4.68 -463.06 -2.17 -22.17 16 7 C 0.13 4.53 5.68 86.38 0.49 5.02 16 8 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.54 -30.07 9.11 25.60 0.23 -29.83 16 11 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 12 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 13 N -0.94 -56.98 13.29 21.45 0.28 -56.70 16 14 Si 0.97 43.52 29.54 68.60 2.03 45.54 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 18 C -0.14 -2.33 6.53 31.61 0.21 -2.12 16 19 C 0.04 0.67 7.63 72.48 0.55 1.22 16 20 O -0.39 -9.50 11.65 -148.98 -1.74 -11.24 16 21 C 0.04 0.91 5.52 72.48 0.40 1.31 16 22 H 0.06 0.82 7.36 -2.39 -0.02 0.81 16 23 H 0.03 0.70 6.51 -2.39 -0.02 0.69 16 24 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.42 9.67 8.02 -92.71 -0.74 8.92 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 29 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 30 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 32 H 0.26 15.08 8.31 -92.70 -0.77 14.31 16 33 H 0.13 1.54 8.00 -2.39 -0.02 1.52 16 34 H 0.08 1.56 7.73 -2.39 -0.02 1.54 16 35 H 0.11 1.46 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 37 H 0.08 2.15 7.37 -2.38 -0.02 2.13 16 38 H 0.10 1.64 7.93 -2.39 -0.02 1.62 16 Total: -1.00 -71.43 315.37 1.50 -69.93 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.30 Total: 13.22 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 4.29 Total: -8.40 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.88 Total: -78.87 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -3.24 Total: -41.44 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.43 1.50 -69.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352434591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.897 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds