Wall clock time and date at job start Mon Mar 30 2020 04:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99643 * 2 1 4 4 H 1.48509 * 109.46879 * 269.99693 * 3 2 1 5 5 H 1.48498 * 109.47436 * 29.99536 * 3 2 1 6 6 H 1.48498 * 109.47064 * 149.99866 * 3 2 1 7 7 C 1.37875 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99720 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.83076 * 300.55722 * 9 7 2 11 11 C 1.54303 * 109.65943 * 179.21785 * 9 7 2 12 12 C 1.54381 * 101.61952 * 219.45295 * 11 9 7 13 13 H 1.08999 * 109.62426 * 281.07665 * 12 11 9 14 14 C 1.53956 * 101.13269 * 36.77464 * 12 11 9 15 15 H 1.09001 * 111.63781 * 199.29998 * 14 12 11 16 16 C 1.52201 * 111.37925 * 73.85953 * 14 12 11 17 17 C 1.52585 * 111.19751 * 52.63187 * 16 14 12 18 18 C 1.53324 * 108.44981 * 297.98869 * 17 16 14 19 19 C 1.50785 * 112.66133 * 158.69310 * 12 11 9 20 20 H 1.09003 * 109.03381 * 176.07250 * 19 12 11 21 21 N 1.46900 * 109.03304 * 57.22172 * 19 12 11 22 22 C 1.46908 * 111.00069 * 152.79123 * 21 19 12 23 23 C 1.52996 * 109.46938 * 180.02562 * 22 21 19 24 24 F 1.39902 * 109.46808 * 180.02562 * 23 22 21 25 25 O 1.43428 * 109.83666 * 61.45854 * 9 7 2 26 26 H 0.97000 * 119.99798 * 0.02562 * 1 2 3 27 27 H 1.09007 * 110.63830 * 101.47546 * 11 9 7 28 28 H 1.09002 * 111.23164 * 337.68585 * 11 9 7 29 29 H 1.08994 * 108.79413 * 292.36285 * 16 14 12 30 30 H 1.09007 * 109.35792 * 173.26489 * 16 14 12 31 31 H 1.09002 * 109.67571 * 178.23600 * 17 16 14 32 32 H 1.09004 * 109.67497 * 57.73647 * 17 16 14 33 33 H 1.09004 * 109.73383 * 183.66269 * 18 17 16 34 34 H 1.09006 * 109.73377 * 304.35059 * 18 17 16 35 35 H 1.00902 * 110.99713 * 28.84139 * 21 19 12 36 36 H 1.08994 * 109.46810 * 300.00554 * 22 21 19 37 37 H 1.09003 * 109.46904 * 60.00162 * 22 21 19 38 38 H 1.08998 * 109.47089 * 299.99948 * 23 22 21 39 39 H 1.09003 * 109.47214 * 60.00323 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8817 -0.6727 -0.8818 11 6 4.0309 -2.6468 0.0215 12 6 5.2346 -2.5334 0.9814 13 1 6.0872 -2.1093 0.4509 14 6 4.7034 -1.5138 2.0053 15 1 5.5134 -1.0504 2.5685 16 6 3.6685 -2.1418 2.9279 17 6 4.2041 -3.4180 3.5701 18 6 4.5059 -4.4306 2.4591 19 6 5.6224 -3.8591 1.5860 20 1 6.5162 -3.7242 2.1953 21 7 5.9200 -4.8095 0.5061 22 6 6.8741 -5.8330 0.9536 23 6 7.1592 -6.8018 -0.1957 24 9 8.0674 -7.7768 0.2306 25 8 3.9979 -0.5490 1.1864 26 1 -0.4850 0.8401 -0.0004 27 1 4.3517 -2.9542 -0.9740 28 1 3.2784 -3.3294 0.4165 29 1 2.7781 -2.3802 2.3461 30 1 3.4037 -1.4310 3.7108 31 1 3.4564 -3.8293 4.2483 32 1 5.1174 -3.1957 4.1221 33 1 4.8289 -5.3742 2.8989 34 1 3.6127 -4.5919 1.8555 35 1 6.2619 -4.3302 -0.3133 36 1 7.8027 -5.3535 1.2631 37 1 6.4505 -6.3815 1.7950 38 1 6.2307 -7.2812 -0.5055 39 1 7.5830 -6.2530 -1.0368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368541433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:41 Heat of formation + Delta-G solvation = -106.160384 kcal Electronic energy + Delta-G solvation = -20312.907190 eV Core-core repulsion = 17169.054407 eV Total energy + Delta-G solvation = -3143.852782 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.79713 -40.05368 -36.77701 -34.40633 -32.40233 -31.55179 -29.40303 -29.02934 -26.97813 -24.64416 -22.82728 -21.88680 -21.27804 -20.10834 -18.51081 -16.86533 -16.55764 -16.23897 -15.92765 -15.75629 -14.91560 -14.70688 -14.33943 -14.09348 -13.91724 -13.36189 -12.95817 -12.77431 -12.54489 -12.32393 -12.01005 -11.49627 -11.36496 -11.10301 -11.01745 -10.95691 -10.79886 -10.67149 -10.53928 -9.92704 -9.88213 -9.72768 -9.47390 -9.23139 -8.53705 -8.48955 -8.11848 -6.04829 -4.11690 3.41223 3.46931 3.73070 3.80972 4.53118 4.58538 4.63703 4.74498 4.87757 4.97889 5.00831 5.23228 5.35741 5.42253 5.45250 5.50219 5.62125 5.64156 5.67225 5.77146 5.81768 5.88648 6.09062 6.20480 6.29576 6.33142 6.44551 6.48428 6.60959 6.73734 6.78483 6.95321 7.17967 7.27464 7.34334 7.69808 8.22930 8.50793 8.96773 9.61226 11.06125 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.005384 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.791636 B = 5199.245360 C = 5464.329164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.083 3.917 3 Si 0.869 3.131 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.224 1.224 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.164 3.836 10 H 0.035 0.965 11 C -0.113 4.113 12 C -0.126 4.126 13 H 0.067 0.933 14 C 0.089 3.911 15 H 0.076 0.924 16 C -0.139 4.139 17 C -0.116 4.116 18 C -0.106 4.106 19 C 0.111 3.889 20 H 0.039 0.961 21 N -0.681 5.681 22 C 0.028 3.972 23 C 0.062 3.938 24 F -0.220 7.220 25 O -0.381 6.381 26 H 0.263 0.737 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.343 0.657 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.850 -9.577 3.178 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.120 4.120 3 Si 0.696 3.304 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.147 1.147 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.109 3.891 10 H 0.053 0.947 11 C -0.150 4.150 12 C -0.145 4.145 13 H 0.085 0.915 14 C 0.030 3.970 15 H 0.094 0.906 16 C -0.177 4.177 17 C -0.154 4.154 18 C -0.144 4.144 19 C 0.002 3.998 20 H 0.057 0.943 21 N -0.312 5.312 22 C -0.102 4.102 23 C 0.007 3.993 24 F -0.201 7.201 25 O -0.302 6.302 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.161 0.839 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.141 -9.669 3.348 16.654 hybrid contribution 1.163 1.197 -0.044 1.669 sum 14.303 -8.472 3.303 16.949 Atomic orbital electron populations 1.69945 1.06675 1.27203 1.49598 1.25007 0.94540 0.99708 0.92751 0.86990 0.82774 0.82593 0.78059 1.21335 1.21954 1.14712 1.21295 0.88717 0.94491 1.52150 0.90786 1.20720 0.95006 0.88769 0.84645 0.94690 1.22766 0.95435 0.99224 0.97601 1.22187 0.99448 0.94515 0.98331 0.91503 1.22507 0.93295 0.89183 0.91994 0.90602 1.21849 1.00670 0.95787 0.99349 1.21501 1.00411 0.96205 0.97332 1.21601 0.99125 0.97285 0.96430 1.20861 0.97264 0.90355 0.91357 0.94327 1.60427 1.45970 1.16737 1.08109 1.22526 0.95038 0.94565 0.98103 1.21922 0.92099 0.88173 0.97148 1.92753 1.70110 1.65283 1.91970 1.89117 1.72599 1.33874 1.34609 0.92750 0.92200 0.90239 0.89240 0.92310 0.91976 0.92840 0.92688 0.90355 0.83873 0.94466 0.89899 0.89661 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 2 C 0.08 2.42 5.47 -17.82 -0.10 2.33 16 3 Si 0.87 22.06 27.01 -169.99 -4.59 17.47 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.22 -5.56 5.38 56.52 0.30 -5.26 16 7 C -0.53 -14.68 8.71 -34.44 -0.30 -14.98 16 8 H 0.07 2.21 7.76 -52.49 -0.41 1.80 16 9 C 0.16 3.81 2.55 -27.20 -0.07 3.74 16 10 H 0.04 0.83 7.55 -51.93 -0.39 0.44 16 11 C -0.11 -2.09 4.92 -25.33 -0.12 -2.22 16 12 C -0.13 -1.96 2.32 -90.51 -0.21 -2.17 16 13 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 14 C 0.09 1.60 4.05 -26.64 -0.11 1.49 16 15 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 16 C -0.14 -2.44 5.08 -27.35 -0.14 -2.58 16 17 C -0.12 -1.61 5.93 -26.78 -0.16 -1.76 16 18 C -0.11 -1.43 5.26 -26.66 -0.14 -1.57 16 19 C 0.11 1.44 2.21 -68.92 -0.15 1.28 16 20 H 0.04 0.48 7.75 -51.93 -0.40 0.08 16 21 N -0.68 -7.78 5.91 -108.00 -0.64 -8.42 16 22 C 0.03 0.27 5.92 -3.82 -0.02 0.25 16 23 C 0.06 0.56 7.81 37.16 0.29 0.85 16 24 F -0.22 -2.45 17.36 2.25 0.04 -2.41 16 25 O -0.38 -8.77 7.61 -35.23 -0.27 -9.03 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 27 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 28 H 0.08 1.58 5.53 -51.93 -0.29 1.29 16 29 H 0.09 1.88 6.41 -51.93 -0.33 1.54 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.66 7.45 -51.93 -0.39 0.27 16 34 H 0.08 1.21 6.69 -51.93 -0.35 0.86 16 35 H 0.34 3.68 8.24 -39.29 -0.32 3.36 16 36 H 0.04 0.36 8.04 -51.93 -0.42 -0.06 16 37 H 0.08 0.85 7.42 -51.93 -0.39 0.46 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 297.95 15.07 4.49 4.49 Total: -1.00 -30.41 297.95 -7.72 -38.14 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.30 Total: 1.87 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -1.23 Total: -15.36 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.14 Total: -35.17 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.27 Total: -9.03 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.59 Total: 17.47 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.41 -7.72 -38.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368541433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.022 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds