Wall clock time and date at job start Mon Mar 30 2020 04:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86807 * 119.99643 * 2 1 4 4 H 1.48509 * 109.46879 * 269.99693 * 3 2 1 5 5 H 1.48498 * 109.47436 * 29.99536 * 3 2 1 6 6 H 1.48498 * 109.47064 * 149.99866 * 3 2 1 7 7 C 1.37875 * 120.00348 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99720 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.02562 * 7 2 1 10 10 H 1.09003 * 109.83076 * 300.55722 * 9 7 2 11 11 C 1.54303 * 109.65943 * 179.21785 * 9 7 2 12 12 C 1.54381 * 101.61952 * 219.45295 * 11 9 7 13 13 H 1.08999 * 109.62426 * 281.07665 * 12 11 9 14 14 C 1.53956 * 101.13269 * 36.77464 * 12 11 9 15 15 H 1.09001 * 111.63781 * 199.29998 * 14 12 11 16 16 C 1.52201 * 111.37925 * 73.85953 * 14 12 11 17 17 C 1.52585 * 111.19751 * 52.63187 * 16 14 12 18 18 C 1.53324 * 108.44981 * 297.98869 * 17 16 14 19 19 C 1.50785 * 112.66133 * 158.69310 * 12 11 9 20 20 H 1.09003 * 109.03381 * 176.07250 * 19 12 11 21 21 N 1.46900 * 109.03304 * 57.22172 * 19 12 11 22 22 C 1.46908 * 111.00069 * 152.79123 * 21 19 12 23 23 C 1.52996 * 109.46938 * 180.02562 * 22 21 19 24 24 F 1.39902 * 109.46808 * 180.02562 * 23 22 21 25 25 O 1.43428 * 109.83666 * 61.45854 * 9 7 2 26 26 H 0.97000 * 119.99798 * 0.02562 * 1 2 3 27 27 H 1.09007 * 110.63830 * 101.47546 * 11 9 7 28 28 H 1.09002 * 111.23164 * 337.68585 * 11 9 7 29 29 H 1.08994 * 108.79413 * 292.36285 * 16 14 12 30 30 H 1.09007 * 109.35792 * 173.26489 * 16 14 12 31 31 H 1.09002 * 109.67571 * 178.23600 * 17 16 14 32 32 H 1.09004 * 109.67497 * 57.73647 * 17 16 14 33 33 H 1.09004 * 109.73383 * 183.66269 * 18 17 16 34 34 H 1.09006 * 109.73377 * 304.35059 * 18 17 16 35 35 H 1.00902 * 110.99713 * 28.84139 * 21 19 12 36 36 H 1.08994 * 109.46810 * 300.00554 * 22 21 19 37 37 H 1.09003 * 109.46904 * 60.00162 * 22 21 19 38 38 H 1.08998 * 109.47089 * 299.99948 * 23 22 21 39 39 H 1.09003 * 109.47214 * 60.00323 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8817 -0.6727 -0.8818 11 6 4.0309 -2.6468 0.0215 12 6 5.2346 -2.5334 0.9814 13 1 6.0872 -2.1093 0.4509 14 6 4.7034 -1.5138 2.0053 15 1 5.5134 -1.0504 2.5685 16 6 3.6685 -2.1418 2.9279 17 6 4.2041 -3.4180 3.5701 18 6 4.5059 -4.4306 2.4591 19 6 5.6224 -3.8591 1.5860 20 1 6.5162 -3.7242 2.1953 21 7 5.9200 -4.8095 0.5061 22 6 6.8741 -5.8330 0.9536 23 6 7.1592 -6.8018 -0.1957 24 9 8.0674 -7.7768 0.2306 25 8 3.9979 -0.5490 1.1864 26 1 -0.4850 0.8401 -0.0004 27 1 4.3517 -2.9542 -0.9740 28 1 3.2784 -3.3294 0.4165 29 1 2.7781 -2.3802 2.3461 30 1 3.4037 -1.4310 3.7108 31 1 3.4564 -3.8293 4.2483 32 1 5.1174 -3.1957 4.1221 33 1 4.8289 -5.3742 2.8989 34 1 3.6127 -4.5919 1.8555 35 1 6.2619 -4.3302 -0.3133 36 1 7.8027 -5.3535 1.2631 37 1 6.4505 -6.3815 1.7950 38 1 6.2307 -7.2812 -0.5055 39 1 7.5830 -6.2530 -1.0368 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368541433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:39 Heat of formation + Delta-G solvation = -126.761104 kcal Electronic energy + Delta-G solvation = -20313.800504 eV Core-core repulsion = 17169.054407 eV Total energy + Delta-G solvation = -3144.746097 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.57089 -41.43961 -38.02437 -35.62036 -34.52353 -32.87049 -30.78552 -30.51532 -28.14076 -26.38127 -23.74823 -23.04776 -22.62503 -21.76739 -19.84063 -18.84051 -17.48067 -17.33099 -17.10199 -16.84879 -16.34444 -16.06286 -15.60295 -15.34978 -15.07104 -14.79875 -14.54023 -14.22880 -13.87385 -13.62870 -13.49656 -12.98982 -12.85305 -12.44669 -12.35184 -12.27729 -12.18966 -11.93305 -11.72221 -11.65023 -11.32342 -11.16673 -11.06769 -10.89637 -10.65985 -9.92971 -9.39482 -8.29302 -6.38925 1.37772 1.40439 1.70349 2.46013 2.88824 3.01716 3.41769 3.72666 3.79873 3.90022 3.99092 4.15290 4.22343 4.25214 4.29807 4.38022 4.43136 4.54816 4.55799 4.62260 4.68717 4.78428 4.78718 4.91644 5.04384 5.06799 5.12220 5.24659 5.32732 5.37439 5.44714 5.58440 5.67015 5.72610 6.04836 6.21147 6.43930 6.54022 6.77159 7.37513 8.85496 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.005384 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.791636 B = 5199.245360 C = 5464.329164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.024 3.976 3 Si 0.934 3.066 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.212 1.212 7 C -0.527 4.527 8 H 0.034 0.966 9 C 0.164 3.836 10 H 0.035 0.965 11 C -0.104 4.104 12 C -0.109 4.109 13 H 0.086 0.914 14 C 0.078 3.922 15 H 0.105 0.895 16 C -0.136 4.136 17 C -0.107 4.107 18 C -0.105 4.105 19 C 0.118 3.882 20 H 0.061 0.939 21 N -0.687 5.687 22 C 0.032 3.968 23 C 0.062 3.938 24 F -0.232 7.232 25 O -0.406 6.406 26 H 0.264 0.736 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.349 0.651 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.184 -9.929 3.691 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.135 1.135 7 C -0.565 4.565 8 H 0.052 0.948 9 C 0.108 3.892 10 H 0.053 0.947 11 C -0.142 4.142 12 C -0.128 4.128 13 H 0.104 0.896 14 C 0.021 3.979 15 H 0.122 0.878 16 C -0.173 4.173 17 C -0.145 4.145 18 C -0.143 4.143 19 C 0.009 3.991 20 H 0.079 0.921 21 N -0.320 5.320 22 C -0.097 4.097 23 C 0.007 3.993 24 F -0.214 7.214 25 O -0.327 6.327 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.169 0.831 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.497 -10.041 3.858 19.694 hybrid contribution 0.084 1.214 -0.174 1.229 sum 16.581 -8.827 3.684 19.142 Atomic orbital electron populations 1.70087 1.08434 1.28013 1.52157 1.25887 0.95227 1.03483 0.92850 0.85978 0.81682 0.78065 0.78418 1.20398 1.22348 1.13470 1.21613 0.91592 0.92726 1.50571 0.94813 1.20582 0.91947 0.91740 0.84934 0.94707 1.22596 0.96351 0.95765 0.99504 1.22092 0.98330 0.95624 0.96710 0.89556 1.22881 0.93623 0.89293 0.92139 0.87764 1.21760 0.99194 0.97676 0.98717 1.21446 1.01512 0.94127 0.97455 1.21571 0.98376 0.98168 0.96154 1.20732 0.97612 0.89012 0.91771 0.92142 1.60342 1.47018 1.16689 1.07921 1.22491 0.94853 0.94144 0.98247 1.21984 0.92093 0.87882 0.97340 1.92731 1.70585 1.65882 1.92154 1.88995 1.73260 1.35593 1.34856 0.92771 0.90450 0.92310 0.93792 0.93130 0.91492 0.90172 0.90618 0.93125 0.83140 0.93621 0.90212 0.89474 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.56 13.96 21.45 0.30 -60.26 16 2 C 0.02 1.42 5.47 84.65 0.46 1.89 16 3 Si 0.93 46.34 27.01 68.60 1.85 48.20 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.30 -14.76 7.11 99.48 0.71 -14.05 16 6 H -0.21 -10.04 5.38 99.48 0.54 -9.50 16 7 C -0.53 -30.39 8.71 25.60 0.22 -30.17 16 8 H 0.03 2.15 7.76 -2.91 -0.02 2.13 16 9 C 0.16 7.59 2.55 30.29 0.08 7.66 16 10 H 0.04 1.62 7.55 -2.39 -0.02 1.61 16 11 C -0.10 -3.80 4.92 31.50 0.15 -3.65 16 12 C -0.11 -3.07 2.32 -10.72 -0.02 -3.10 16 13 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 14 C 0.08 2.65 4.05 30.65 0.12 2.77 16 15 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 16 C -0.14 -4.69 5.08 30.19 0.15 -4.54 16 17 C -0.11 -2.72 5.93 30.57 0.18 -2.54 16 18 C -0.10 -2.57 5.26 30.64 0.16 -2.41 16 19 C 0.12 2.64 2.21 44.14 0.10 2.74 16 20 H 0.06 1.17 7.75 -2.39 -0.02 1.15 16 21 N -0.69 -13.41 5.91 -495.61 -2.93 -16.33 16 22 C 0.03 0.52 5.92 86.30 0.51 1.03 16 23 C 0.06 0.93 7.81 71.98 0.56 1.50 16 24 F -0.23 -4.62 17.36 44.97 0.78 -3.84 16 25 O -0.41 -18.20 7.61 -148.98 -1.13 -19.34 16 26 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 27 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 28 H 0.06 2.39 5.53 -2.39 -0.01 2.38 16 29 H 0.04 1.91 6.41 -2.39 -0.02 1.90 16 30 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.08 1.58 7.45 -2.38 -0.02 1.56 16 34 H 0.05 1.54 6.69 -2.38 -0.02 1.52 16 35 H 0.35 6.18 8.24 -89.69 -0.74 5.44 16 36 H 0.05 0.69 8.04 -2.39 -0.02 0.67 16 37 H 0.08 1.36 7.42 -2.39 -0.02 1.34 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -68.47 297.95 1.68 -66.79 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.13 Total: 13.61 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 2.68 Total: -28.82 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -2.63 Total: -76.60 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.13 Total: -19.34 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.78 Total: -3.84 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.85 Total: 48.20 kcal Total: -68.47 1.68 -66.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368541433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.976 kcal (2) G-P(sol) polarization free energy of solvation -68.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds