Wall clock time and date at job start Mon Mar 30 2020 04:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99999 * 2 1 4 4 H 1.48500 * 109.46951 * 270.00054 * 3 2 1 5 5 H 1.48498 * 109.47162 * 29.99775 * 3 2 1 6 6 H 1.48498 * 109.47343 * 150.00214 * 3 2 1 7 7 C 1.37881 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00314 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.86299 * 300.70220 * 9 7 2 11 11 C 1.55376 * 109.86855 * 179.71374 * 9 7 2 12 12 C 1.53885 * 101.14837 * 218.85602 * 11 9 7 13 13 H 1.09005 * 111.43189 * 279.97900 * 12 11 9 14 14 C 1.55323 * 99.43001 * 37.82447 * 12 11 9 15 15 H 1.09000 * 108.56425 * 71.74267 * 14 12 11 16 16 C 1.50931 * 107.99588 * 188.25909 * 14 12 11 17 17 C 1.53782 * 108.25578 * 297.16732 * 16 14 12 18 18 C 1.52583 * 111.31721 * 56.68532 * 17 16 14 19 19 C 1.52012 * 114.90373 * 152.19611 * 12 11 9 20 20 H 1.09004 * 109.88442 * 305.88523 * 19 12 11 21 21 N 1.46901 * 109.88419 * 66.89908 * 19 12 11 22 22 C 1.46903 * 110.99875 * 205.00213 * 21 19 12 23 23 C 1.52999 * 109.47139 * 180.02562 * 22 21 19 24 24 F 1.39904 * 109.46960 * 179.97438 * 23 22 21 25 25 O 1.41700 * 104.62263 * 316.36284 * 14 12 11 26 26 H 0.96996 * 120.00205 * 359.97438 * 1 2 3 27 27 H 1.08998 * 111.08687 * 336.82654 * 11 9 7 28 28 H 1.09006 * 111.08233 * 100.84684 * 11 9 7 29 29 H 1.09008 * 109.85913 * 177.19586 * 16 14 12 30 30 H 1.08996 * 109.10989 * 56.70705 * 16 14 12 31 31 H 1.08996 * 109.10901 * 296.20663 * 17 16 14 32 32 H 1.08997 * 109.05846 * 177.12648 * 17 16 14 33 33 H 1.08995 * 109.07871 * 184.57419 * 18 17 16 34 34 H 1.08998 * 109.02665 * 65.56459 * 18 17 16 35 35 H 1.00900 * 111.00178 * 328.95248 * 21 19 12 36 36 H 1.09004 * 109.47039 * 300.00120 * 22 21 19 37 37 H 1.08997 * 109.47207 * 60.00120 * 22 21 19 38 38 H 1.09004 * 109.46958 * 299.99808 * 23 22 21 39 39 H 1.08997 * 109.47268 * 59.99796 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6129 -2.5576 0.8835 11 6 2.2525 -3.6871 -0.0052 12 6 1.5409 -4.6707 -0.9508 13 1 0.7496 -5.2159 -0.4364 14 6 0.9651 -3.6613 -1.9815 15 1 1.7874 -3.2698 -2.5804 16 6 0.0417 -4.4155 -2.9069 17 6 0.8716 -5.4642 -3.6661 18 6 1.5986 -6.3990 -2.7039 19 6 2.4634 -5.6156 -1.7038 20 1 3.2238 -5.0449 -2.2369 21 7 3.1040 -6.5440 -0.7627 22 6 4.3780 -7.0414 -1.2988 23 6 5.0136 -8.0035 -0.2933 24 9 6.2267 -8.4777 -0.8042 25 8 0.4467 -2.6031 -1.1946 26 1 -0.4850 0.8400 0.0004 27 1 3.2182 -3.3836 -0.4094 28 1 2.3636 -4.1121 0.9924 29 1 -0.4190 -3.7253 -3.6137 30 1 -0.7294 -4.9102 -2.3164 31 1 1.6050 -4.9546 -4.2911 32 1 0.2083 -6.0513 -4.3013 33 1 2.2369 -7.0726 -3.2755 34 1 0.8625 -6.9862 -2.1548 35 1 3.2357 -6.1111 0.1392 36 1 4.1975 -7.5648 -2.2378 37 1 5.0508 -6.2020 -1.4743 38 1 5.1941 -7.4805 0.6459 39 1 4.3407 -8.8429 -0.1182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368541434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:43 Heat of formation + Delta-G solvation = -111.879884 kcal Electronic energy + Delta-G solvation = -20013.510185 eV Core-core repulsion = 16869.409387 eV Total energy + Delta-G solvation = -3144.100799 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.75333 -39.76343 -36.60290 -34.72588 -32.45174 -31.57398 -29.41601 -28.57345 -26.88243 -24.69571 -22.69099 -21.37678 -20.99330 -20.02651 -19.64042 -16.70405 -16.46449 -16.17215 -15.82202 -15.09354 -14.75423 -14.67111 -14.47942 -14.22170 -14.11814 -13.10369 -13.09650 -12.93502 -12.61585 -12.10896 -11.64741 -11.61678 -11.33901 -11.13902 -11.07175 -10.93420 -10.76174 -10.54921 -10.44669 -10.27757 -10.13179 -9.86765 -9.43834 -9.17140 -8.54940 -8.50011 -7.85484 -6.00629 -4.15225 3.29175 3.35867 3.38003 3.88653 4.40496 4.58158 4.66081 4.70003 4.89644 4.98075 5.15477 5.25001 5.34837 5.39269 5.44151 5.53534 5.61141 5.65942 5.74671 5.77058 5.87921 5.98727 6.13733 6.17031 6.28761 6.37065 6.39864 6.54513 6.57048 6.66151 6.79182 6.89927 7.06562 7.32557 7.62220 7.85783 8.24722 8.55023 9.00461 9.56730 11.05899 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.005544 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.175034 B = 5049.044389 C = 5969.940613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.210 3.790 10 H 0.043 0.957 11 C -0.141 4.141 12 C -0.134 4.134 13 H 0.085 0.915 14 C 0.086 3.914 15 H 0.035 0.965 16 C -0.113 4.113 17 C -0.112 4.112 18 C -0.105 4.105 19 C 0.104 3.896 20 H 0.049 0.951 21 N -0.683 5.683 22 C 0.026 3.974 23 C 0.062 3.938 24 F -0.219 7.219 25 O -0.352 6.352 26 H 0.261 0.739 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.347 0.653 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.969 -13.915 -3.300 15.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.155 3.845 10 H 0.061 0.939 11 C -0.178 4.178 12 C -0.153 4.153 13 H 0.103 0.897 14 C 0.025 3.975 15 H 0.053 0.947 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.143 4.143 19 C -0.005 4.005 20 H 0.067 0.933 21 N -0.315 5.315 22 C -0.104 4.104 23 C 0.007 3.993 24 F -0.201 7.201 25 O -0.271 6.271 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.305 -14.229 -3.564 15.287 hybrid contribution 1.304 1.621 0.084 2.082 sum 5.609 -12.607 -3.480 14.231 Atomic orbital electron populations 1.70032 1.06004 1.26545 1.47205 1.25053 0.94721 0.99177 0.93675 0.86672 0.79957 0.83539 0.78224 1.20527 1.21056 1.19833 1.21365 0.92653 0.90821 1.53624 0.92395 1.20679 0.87560 0.91547 0.84704 0.93923 1.23050 1.00080 0.96779 0.97933 1.22887 0.98684 0.95937 0.97752 0.89701 1.21816 0.94988 0.87842 0.92811 0.94745 1.21308 0.98338 0.97037 0.98350 1.21472 0.98821 0.96959 0.97721 1.21524 0.98580 0.97687 0.96524 1.21381 0.95190 0.91141 0.92801 0.93337 1.60377 1.22434 1.42220 1.06477 1.22519 0.91107 0.98013 0.98747 1.21917 0.81694 0.98748 0.96928 1.92754 1.47814 1.90142 1.89367 1.88695 1.55835 1.48520 1.34067 0.92924 0.91911 0.92252 0.91552 0.91787 0.92336 0.91748 0.92690 0.91414 0.83451 0.90060 0.94091 0.90853 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.71 12.93 55.43 0.72 -24.99 16 2 C 0.08 2.26 5.41 -17.82 -0.10 2.17 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.55 -15.26 8.76 -34.44 -0.30 -15.56 16 8 H 0.06 1.57 7.55 -52.49 -0.40 1.18 16 9 C 0.21 5.35 3.34 -26.62 -0.09 5.26 16 10 H 0.04 1.17 8.14 -51.93 -0.42 0.75 16 11 C -0.14 -2.77 5.40 -25.01 -0.14 -2.90 16 12 C -0.13 -2.30 2.24 -89.43 -0.20 -2.50 16 13 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 14 C 0.09 1.72 2.80 -26.54 -0.07 1.65 16 15 H 0.03 0.73 7.89 -51.93 -0.41 0.33 16 16 C -0.11 -1.85 5.95 -27.36 -0.16 -2.01 16 17 C -0.11 -1.46 5.86 -26.54 -0.16 -1.61 16 18 C -0.10 -1.34 5.40 -26.59 -0.14 -1.48 16 19 C 0.10 1.47 2.15 -67.86 -0.15 1.33 16 20 H 0.05 0.74 7.68 -51.93 -0.40 0.34 16 21 N -0.68 -8.34 6.33 -106.88 -0.68 -9.02 16 22 C 0.03 0.29 5.96 -3.82 -0.02 0.26 16 23 C 0.06 0.60 7.81 37.16 0.29 0.89 16 24 F -0.22 -2.58 17.36 2.25 0.04 -2.54 16 25 O -0.35 -9.17 10.59 -35.20 -0.37 -9.55 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.06 1.25 7.68 -51.93 -0.40 0.85 16 28 H 0.06 1.05 8.07 -51.93 -0.42 0.63 16 29 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.35 4.20 7.70 -39.29 -0.30 3.90 16 36 H 0.08 0.87 7.65 -51.93 -0.40 0.47 16 37 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -30.24 310.67 -8.35 -38.59 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.48 Total: 0.98 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -1.24 Total: -14.51 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.04 Total: -34.01 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.37 Total: -9.55 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.24 -8.35 -38.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368541434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.292 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds