Wall clock time and date at job start Mon Mar 30 2020 04:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 119.99999 * 2 1 4 4 H 1.48500 * 109.46951 * 270.00054 * 3 2 1 5 5 H 1.48498 * 109.47162 * 29.99775 * 3 2 1 6 6 H 1.48498 * 109.47343 * 150.00214 * 3 2 1 7 7 C 1.37881 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00314 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99861 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.86299 * 300.70220 * 9 7 2 11 11 C 1.55376 * 109.86855 * 179.71374 * 9 7 2 12 12 C 1.53885 * 101.14837 * 218.85602 * 11 9 7 13 13 H 1.09005 * 111.43189 * 279.97900 * 12 11 9 14 14 C 1.55323 * 99.43001 * 37.82447 * 12 11 9 15 15 H 1.09000 * 108.56425 * 71.74267 * 14 12 11 16 16 C 1.50931 * 107.99588 * 188.25909 * 14 12 11 17 17 C 1.53782 * 108.25578 * 297.16732 * 16 14 12 18 18 C 1.52583 * 111.31721 * 56.68532 * 17 16 14 19 19 C 1.52012 * 114.90373 * 152.19611 * 12 11 9 20 20 H 1.09004 * 109.88442 * 305.88523 * 19 12 11 21 21 N 1.46901 * 109.88419 * 66.89908 * 19 12 11 22 22 C 1.46903 * 110.99875 * 205.00213 * 21 19 12 23 23 C 1.52999 * 109.47139 * 180.02562 * 22 21 19 24 24 F 1.39904 * 109.46960 * 179.97438 * 23 22 21 25 25 O 1.41700 * 104.62263 * 316.36284 * 14 12 11 26 26 H 0.96996 * 120.00205 * 359.97438 * 1 2 3 27 27 H 1.08998 * 111.08687 * 336.82654 * 11 9 7 28 28 H 1.09006 * 111.08233 * 100.84684 * 11 9 7 29 29 H 1.09008 * 109.85913 * 177.19586 * 16 14 12 30 30 H 1.08996 * 109.10989 * 56.70705 * 16 14 12 31 31 H 1.08996 * 109.10901 * 296.20663 * 17 16 14 32 32 H 1.08997 * 109.05846 * 177.12648 * 17 16 14 33 33 H 1.08995 * 109.07871 * 184.57419 * 18 17 16 34 34 H 1.08998 * 109.02665 * 65.56459 * 18 17 16 35 35 H 1.00900 * 111.00178 * 328.95248 * 21 19 12 36 36 H 1.09004 * 109.47039 * 300.00120 * 22 21 19 37 37 H 1.08997 * 109.47207 * 60.00120 * 22 21 19 38 38 H 1.09004 * 109.46958 * 299.99808 * 23 22 21 39 39 H 1.08997 * 109.47268 * 59.99796 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6129 -2.5576 0.8835 11 6 2.2525 -3.6871 -0.0052 12 6 1.5409 -4.6707 -0.9508 13 1 0.7496 -5.2159 -0.4364 14 6 0.9651 -3.6613 -1.9815 15 1 1.7874 -3.2698 -2.5804 16 6 0.0417 -4.4155 -2.9069 17 6 0.8716 -5.4642 -3.6661 18 6 1.5986 -6.3990 -2.7039 19 6 2.4634 -5.6156 -1.7038 20 1 3.2238 -5.0449 -2.2369 21 7 3.1040 -6.5440 -0.7627 22 6 4.3780 -7.0414 -1.2988 23 6 5.0136 -8.0035 -0.2933 24 9 6.2267 -8.4777 -0.8042 25 8 0.4467 -2.6031 -1.1946 26 1 -0.4850 0.8400 0.0004 27 1 3.2182 -3.3836 -0.4094 28 1 2.3636 -4.1121 0.9924 29 1 -0.4190 -3.7253 -3.6137 30 1 -0.7294 -4.9102 -2.3164 31 1 1.6050 -4.9546 -4.2911 32 1 0.2083 -6.0513 -4.3013 33 1 2.2369 -7.0726 -3.2755 34 1 0.8625 -6.9862 -2.1548 35 1 3.2357 -6.1111 0.1392 36 1 4.1975 -7.5648 -2.2378 37 1 5.0508 -6.2020 -1.4743 38 1 5.1941 -7.4805 0.6459 39 1 4.3407 -8.8429 -0.1182 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368541434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:43 Heat of formation + Delta-G solvation = -131.847496 kcal Electronic energy + Delta-G solvation = -20014.376046 eV Core-core repulsion = 16869.409387 eV Total energy + Delta-G solvation = -3144.966659 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.58639 -41.24774 -38.00153 -35.94687 -34.52229 -33.01687 -30.69730 -30.18341 -28.12163 -26.46471 -23.62382 -22.97409 -22.26408 -21.61507 -20.98780 -18.57933 -17.54603 -17.16058 -16.94312 -16.70226 -16.50349 -15.90301 -15.80885 -15.38005 -15.35904 -14.68179 -14.44826 -14.20208 -13.90356 -13.55231 -13.40371 -12.95834 -12.84458 -12.70057 -12.43438 -12.32218 -12.13330 -11.97956 -11.71534 -11.63284 -11.59153 -11.35860 -11.00626 -10.88312 -10.69709 -9.82481 -9.50360 -8.15922 -6.38311 1.37500 1.38501 1.49164 2.37929 2.87716 2.98843 3.36015 3.67475 3.80196 3.87147 3.98449 4.01102 4.15682 4.18925 4.30760 4.39235 4.43351 4.50509 4.52127 4.55166 4.70511 4.75383 4.86914 4.89153 4.94436 5.05590 5.16417 5.19709 5.23795 5.25981 5.37246 5.50321 5.61491 5.72167 5.97895 6.14692 6.33247 6.55935 6.99624 7.39021 8.91165 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.005544 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.175034 B = 5049.044389 C = 5969.940613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.566 4.566 8 H 0.060 0.940 9 C 0.199 3.801 10 H 0.009 0.991 11 C -0.127 4.127 12 C -0.113 4.113 13 H 0.086 0.914 14 C 0.070 3.930 15 H 0.018 0.982 16 C -0.109 4.109 17 C -0.104 4.104 18 C -0.100 4.100 19 C 0.112 3.888 20 H 0.039 0.961 21 N -0.677 5.677 22 C 0.028 3.972 23 C 0.064 3.936 24 F -0.232 7.232 25 O -0.391 6.391 26 H 0.262 0.738 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.347 0.653 36 H 0.086 0.914 37 H 0.033 0.967 38 H 0.085 0.915 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.166 -15.519 -3.863 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.179 4.179 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.603 4.603 8 H 0.078 0.922 9 C 0.144 3.856 10 H 0.026 0.974 11 C -0.165 4.165 12 C -0.132 4.132 13 H 0.104 0.896 14 C 0.011 3.989 15 H 0.036 0.964 16 C -0.147 4.147 17 C -0.142 4.142 18 C -0.138 4.138 19 C 0.002 3.998 20 H 0.057 0.943 21 N -0.309 5.309 22 C -0.102 4.102 23 C 0.009 3.991 24 F -0.213 7.213 25 O -0.311 6.311 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.166 0.834 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.103 0.897 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.520 -15.851 -4.128 17.285 hybrid contribution 0.910 2.103 0.258 2.306 sum 6.429 -13.748 -3.870 15.663 Atomic orbital electron populations 1.70176 1.07725 1.27422 1.48675 1.25946 0.95571 1.03055 0.93286 0.85575 0.78952 0.78884 0.78301 1.20257 1.20428 1.18552 1.21797 0.92992 0.92335 1.53212 0.92209 1.20609 0.87993 0.93272 0.83703 0.97365 1.22873 0.98423 0.95293 0.99917 1.22713 0.98853 0.95402 0.96242 0.89586 1.22140 0.95680 0.87628 0.93452 0.96423 1.21346 0.98270 0.97386 0.97658 1.21459 0.98884 0.96210 0.97628 1.21501 0.98640 0.97506 0.96187 1.21266 0.94670 0.90977 0.92888 0.94299 1.60388 1.23217 1.41188 1.06087 1.22529 0.90226 0.98023 0.99399 1.21978 0.81243 0.99076 0.96779 1.92732 1.48703 1.90284 1.89594 1.88594 1.56615 1.51231 1.34702 0.92943 0.92226 0.90122 0.92381 0.91549 0.92210 0.88937 0.90492 0.90980 0.83358 0.89542 0.94879 0.89665 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.67 12.93 21.45 0.28 -55.39 16 2 C 0.02 1.36 5.41 84.66 0.46 1.82 16 3 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.57 -32.38 8.76 25.60 0.22 -32.15 16 8 H 0.06 3.29 7.55 -2.91 -0.02 3.27 16 9 C 0.20 10.53 3.34 30.66 0.10 10.63 16 10 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 11 C -0.13 -5.01 5.40 31.71 0.17 -4.84 16 12 C -0.11 -3.81 2.24 -10.02 -0.02 -3.84 16 13 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 14 C 0.07 2.87 2.80 30.72 0.09 2.96 16 15 H 0.02 0.77 7.89 -2.39 -0.02 0.75 16 16 C -0.11 -3.50 5.95 30.18 0.18 -3.32 16 17 C -0.10 -2.44 5.86 30.72 0.18 -2.26 16 18 C -0.10 -2.23 5.40 30.68 0.17 -2.06 16 19 C 0.11 2.92 2.15 44.82 0.10 3.01 16 20 H 0.04 1.11 7.68 -2.39 -0.02 1.10 16 21 N -0.68 -14.71 6.33 -492.06 -3.11 -17.83 16 22 C 0.03 0.54 5.96 86.30 0.51 1.05 16 23 C 0.06 1.05 7.81 71.98 0.56 1.61 16 24 F -0.23 -4.94 17.36 44.97 0.78 -4.16 16 25 O -0.39 -21.23 10.59 -148.87 -1.58 -22.81 16 26 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 27 H 0.06 2.37 7.68 -2.39 -0.02 2.35 16 28 H 0.08 2.78 8.07 -2.38 -0.02 2.76 16 29 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.08 1.44 7.66 -2.39 -0.02 1.42 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.35 7.55 7.70 -89.69 -0.69 6.86 16 36 H 0.09 1.58 7.65 -2.39 -0.02 1.56 16 37 H 0.03 0.69 8.06 -2.39 -0.02 0.67 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -67.42 310.67 1.44 -65.98 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.33 Total: 15.00 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 2.72 Total: -27.38 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -2.84 Total: -73.22 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -1.58 Total: -22.81 kcal Atomic # 9 Polarization: -4.94 SS G_CDS: 0.78 Total: -4.16 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -67.42 1.44 -65.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368541434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.868 kcal (2) G-P(sol) polarization free energy of solvation -67.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds