Wall clock time and date at job start Mon Mar 30 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00266 * 2 1 4 4 H 1.48504 * 109.46938 * 240.00215 * 3 2 1 5 5 H 1.48500 * 109.46826 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47116 * 120.00171 * 3 2 1 7 7 C 1.37883 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00257 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99582 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.46913 * 180.02562 * 9 7 2 11 11 C 1.42899 * 114.00105 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47101 * 179.97438 * 11 10 9 13 13 N 1.46899 * 109.47145 * 64.99916 * 12 11 10 14 14 C 1.46897 * 111.00240 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.47600 * 325.00675 * 14 13 12 16 16 C 1.53002 * 109.46883 * 85.00122 * 14 13 12 17 17 C 1.52997 * 109.47415 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47164 * 300.00027 * 17 16 14 19 19 C 1.52999 * 109.46626 * 59.99702 * 18 17 16 20 20 C 1.52996 * 109.47593 * 205.00080 * 14 13 12 21 21 H 1.09000 * 109.47054 * 300.00396 * 20 14 13 22 22 C 1.53002 * 109.46969 * 60.00493 * 20 14 13 23 23 O 1.42900 * 109.47073 * 185.00348 * 22 20 14 24 24 H 0.96997 * 119.99484 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47276 * 60.00653 * 9 7 2 26 26 H 1.09005 * 109.47356 * 299.99925 * 9 7 2 27 27 H 1.08998 * 109.47311 * 60.00371 * 11 10 9 28 28 H 1.08997 * 109.47363 * 299.99878 * 11 10 9 29 29 H 1.09003 * 109.47324 * 305.00279 * 12 11 10 30 30 H 1.08996 * 109.47105 * 185.00163 * 12 11 10 31 31 H 1.00908 * 110.99782 * 56.05017 * 13 12 11 32 32 H 1.09000 * 109.46986 * 60.00080 * 16 14 13 33 33 H 1.09001 * 109.47601 * 300.00803 * 16 14 13 34 34 H 1.09001 * 109.46922 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.47140 * 59.99976 * 17 16 14 36 36 H 1.08993 * 109.46955 * 180.02562 * 18 17 16 37 37 H 1.09000 * 109.47050 * 300.00004 * 18 17 16 38 38 H 1.09000 * 109.47160 * 60.00369 * 19 18 17 39 39 H 1.09002 * 109.46719 * 180.02562 * 19 18 17 40 40 H 1.09005 * 109.46847 * 305.00067 * 22 20 14 41 41 H 1.08999 * 109.47369 * 64.99834 * 22 20 14 42 42 H 0.96700 * 113.99971 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8754 -0.0011 12 6 2.6479 -5.9562 -0.0017 13 7 3.4080 -5.8884 1.2535 14 6 4.4587 -6.9144 1.2888 15 1 4.1058 -7.8135 0.7837 16 6 5.7087 -6.3889 0.5800 17 6 6.8029 -7.4577 0.6161 18 6 7.1431 -7.7903 2.0702 19 6 5.8931 -8.3159 2.7789 20 6 4.7988 -7.2466 2.7430 21 1 5.1518 -6.3474 3.2480 22 6 3.5489 -7.7722 3.4518 23 8 3.8356 -7.9722 4.8373 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8897 27 1 0.9451 -4.9822 -0.8913 28 1 0.9445 -4.9827 0.8886 29 1 3.3214 -5.7953 -0.8435 30 1 2.1819 -6.9374 -0.0917 31 1 2.7961 -5.9704 2.0517 32 1 6.0617 -5.4898 1.0850 33 1 5.4665 -6.1522 -0.4561 34 1 7.6935 -7.0830 0.1115 35 1 6.4496 -8.3565 0.1108 36 1 7.9229 -8.5514 2.0959 37 1 7.4964 -6.8914 2.5755 38 1 5.5398 -9.2148 2.2737 39 1 6.1354 -8.5524 3.8150 40 1 2.7411 -7.0476 3.3488 41 1 3.2474 -8.7186 3.0028 42 1 3.0865 -8.3058 5.3498 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378754076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:05 Heat of formation + Delta-G solvation = -121.360544 kcal Electronic energy + Delta-G solvation = -19668.286423 eV Core-core repulsion = 16647.234817 eV Total energy + Delta-G solvation = -3021.051606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.53213 -36.92972 -36.47888 -34.73737 -32.64064 -31.60012 -30.21407 -27.66655 -26.35695 -25.49904 -22.44561 -22.15835 -21.21455 -21.07562 -19.80405 -17.63306 -16.36314 -15.88331 -15.73340 -15.36182 -14.96836 -14.79916 -14.39346 -14.23532 -13.96083 -13.64192 -13.17523 -13.02660 -12.55027 -12.54543 -12.07242 -11.76411 -11.65465 -11.35089 -11.22053 -11.06883 -10.79936 -10.75595 -10.64707 -10.46129 -10.31587 -10.08846 -10.04979 -9.86981 -9.04905 -8.75195 -8.16183 -8.08268 -6.05539 -4.06364 3.36633 3.38609 3.43266 3.99027 4.16908 4.40096 4.58677 4.69158 4.78270 4.93326 5.04790 5.13169 5.25253 5.26922 5.30953 5.36101 5.45007 5.45674 5.55633 5.58050 5.69477 5.76223 5.93524 5.98608 6.04051 6.06636 6.10818 6.14584 6.21828 6.28732 6.36288 6.47955 7.15058 7.25352 7.42256 7.48813 7.58001 7.86339 8.22524 8.67389 9.08172 9.58307 11.06186 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.003950 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.307706 B = 7086.991090 C = 7342.295635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.379 6.379 11 C 0.065 3.935 12 C 0.065 3.935 13 N -0.675 5.675 14 C 0.098 3.902 15 H 0.039 0.961 16 C -0.107 4.107 17 C -0.120 4.120 18 C -0.121 4.121 19 C -0.106 4.106 20 C -0.089 4.089 21 H 0.089 0.911 22 C 0.076 3.924 23 O -0.570 6.570 24 H 0.263 0.737 25 H 0.002 0.998 26 H 0.003 0.997 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.338 0.662 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.042 0.958 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.395 -19.336 4.596 21.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.299 6.299 11 C -0.013 4.013 12 C -0.064 4.064 13 N -0.308 5.308 14 C -0.012 4.012 15 H 0.057 0.943 16 C -0.145 4.145 17 C -0.158 4.158 18 C -0.158 4.158 19 C -0.144 4.144 20 C -0.108 4.108 21 H 0.107 0.893 22 C -0.003 4.003 23 O -0.375 6.375 24 H 0.073 0.927 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.159 0.841 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 9.428 -18.455 4.175 21.140 hybrid contribution -1.240 -0.127 0.253 1.272 sum 8.188 -18.582 4.428 20.783 Atomic orbital electron populations 1.69958 1.06111 1.27143 1.50870 1.24945 0.94953 0.99387 0.95246 0.86402 0.79304 0.81945 0.78861 1.20036 1.21231 1.20001 1.21033 0.94078 0.89358 1.50416 0.91549 1.20179 0.88867 0.83952 0.95075 1.87962 1.34596 1.12299 1.95002 1.22227 0.93865 0.86458 0.98765 1.22032 0.95625 0.95449 0.93283 1.60394 1.16138 1.49988 1.04313 1.21460 0.93247 0.92381 0.94137 0.94327 1.21512 0.93600 0.98491 1.00869 1.21563 0.98775 0.98959 0.96468 1.21557 0.97257 1.01036 0.95955 1.21485 0.94733 0.97278 1.00888 1.21311 0.94715 0.99895 0.94891 0.89309 1.22305 0.97413 0.98670 0.81866 1.86479 1.41500 1.89064 1.20430 0.92704 0.98025 0.97951 0.94237 0.94952 0.90298 0.95038 0.84143 0.90819 0.91698 0.91903 0.92422 0.92252 0.91748 0.92494 0.91234 0.93355 0.94006 0.77599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -15.43 9.43 -34.44 -0.32 -15.75 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.45 5.69 36.00 0.20 5.66 16 10 O -0.38 -9.41 10.27 -35.23 -0.36 -9.77 16 11 C 0.07 1.22 6.22 37.16 0.23 1.45 16 12 C 0.07 0.98 5.87 -3.82 -0.02 0.96 16 13 N -0.67 -10.01 6.26 -106.73 -0.67 -10.68 16 14 C 0.10 1.18 1.97 -67.71 -0.13 1.05 16 15 H 0.04 0.44 7.80 -51.93 -0.40 0.04 16 16 C -0.11 -1.32 5.42 -26.73 -0.15 -1.46 16 17 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 18 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 19 C -0.11 -1.05 5.10 -26.71 -0.14 -1.19 16 20 C -0.09 -1.01 2.09 -90.60 -0.19 -1.20 16 21 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 22 C 0.08 0.76 6.29 37.16 0.23 1.00 16 23 O -0.57 -5.81 13.20 -35.23 -0.46 -6.27 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 26 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.24 7.44 -51.93 -0.39 0.85 16 30 H 0.03 0.39 8.05 -51.93 -0.42 -0.03 16 31 H 0.34 4.76 6.10 -39.29 -0.24 4.52 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.85 7.45 -51.93 -0.39 0.46 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.72 7.82 -51.93 -0.41 0.31 16 40 H 0.05 0.50 6.03 -51.93 -0.31 0.18 16 41 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.38 2.17 9.12 45.56 0.42 2.59 16 LS Contribution 332.91 15.07 5.02 5.02 Total: -1.00 -33.01 332.91 -8.22 -41.22 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.76 Total: 0.49 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.70 Total: -10.58 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.07 Total: -37.38 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.83 Total: -16.04 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.01 -8.22 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378754076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.138 kcal (2) G-P(sol) polarization free energy of solvation -33.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds