Wall clock time and date at job start Mon Mar 30 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47020 * 2 1 4 4 H 1.08999 * 109.47383 * 54.44189 * 3 2 1 5 5 N 1.46897 * 109.47277 * 294.44490 * 3 2 1 6 6 C 1.46896 * 111.00123 * 108.00868 * 5 3 2 7 7 C 1.53002 * 109.47193 * 174.64393 * 6 5 3 8 8 O 1.42898 * 109.47371 * 64.99538 * 7 6 5 9 9 C 1.42899 * 114.00236 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00066 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00108 * 179.97438 * 10 9 8 13 13 N 1.31521 * 120.00039 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99910 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47323 * 90.00163 * 14 12 10 16 16 H 1.48501 * 109.47018 * 209.99588 * 14 12 10 17 17 H 1.48492 * 109.47306 * 329.99830 * 14 12 10 18 18 C 1.53002 * 109.47028 * 174.44360 * 3 2 1 19 19 H 1.09002 * 110.43436 * 303.90935 * 18 3 2 20 20 C 1.54807 * 110.48855 * 181.22203 * 18 3 2 21 21 C 1.54992 * 102.09332 * 220.44154 * 20 18 3 22 22 O 1.44381 * 103.48882 * 37.02204 * 21 20 18 23 23 C 1.43744 * 106.97565 * 319.94059 * 22 21 20 24 24 H 1.09002 * 109.46678 * 303.98554 * 1 2 3 25 25 H 1.08995 * 109.47473 * 63.98643 * 1 2 3 26 26 H 1.08996 * 109.46909 * 183.99210 * 1 2 3 27 27 H 1.09001 * 109.46681 * 240.00147 * 2 1 3 28 28 H 1.09001 * 109.46996 * 119.99919 * 2 1 3 29 29 H 1.00898 * 110.99914 * 344.04687 * 5 3 2 30 30 H 1.08998 * 109.47115 * 294.63562 * 6 5 3 31 31 H 1.08998 * 109.47689 * 54.64348 * 6 5 3 32 32 H 1.08995 * 109.47608 * 184.99932 * 7 6 5 33 33 H 1.09008 * 109.47074 * 304.99741 * 7 6 5 34 34 H 1.08996 * 109.47282 * 300.00012 * 9 8 7 35 35 H 1.09001 * 109.47089 * 60.00203 * 9 8 7 36 36 H 0.96997 * 119.99510 * 179.97438 * 13 12 10 37 37 H 1.09002 * 110.90941 * 338.63871 * 20 18 3 38 38 H 1.09000 * 110.90943 * 102.24218 * 20 18 3 39 39 H 1.09000 * 110.62206 * 278.51967 * 21 20 18 40 40 H 1.09000 * 110.62166 * 155.51967 * 21 20 18 41 41 H 1.09001 * 109.87714 * 267.08960 * 23 22 21 42 42 H 1.08996 * 109.87790 * 145.93722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5977 1.9842 0.8360 5 7 1.6629 2.0952 -1.2608 6 6 0.5967 3.0822 -1.0443 7 6 0.3244 3.8333 -2.3491 8 8 -0.1936 2.9246 -3.3227 9 6 -0.4829 3.5281 -4.5853 10 6 -1.0210 2.4841 -5.5296 11 1 -1.1306 1.4619 -5.1988 12 6 -1.3733 2.8340 -6.8158 13 7 -1.8424 1.9228 -7.6401 14 14 -1.1830 4.6019 -7.3882 15 1 0.1692 4.7902 -7.9727 16 1 -2.2124 4.9032 -8.4152 17 1 -1.3544 5.5177 -6.2320 18 6 3.5637 1.4447 0.1397 19 1 3.8644 0.9031 1.0365 20 6 4.1026 2.8956 0.1731 21 6 5.3815 2.7870 -0.6957 22 8 5.0056 1.8563 -1.7335 23 6 4.2207 0.8264 -1.1095 24 1 -0.3633 0.5745 0.8522 25 1 -0.3634 0.4507 -0.9235 26 1 -0.3633 -1.0251 0.0715 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.3899 1.4138 -1.9531 30 1 -0.3111 2.5718 -0.7228 31 1 0.9073 3.7900 -0.2757 32 1 -0.4026 4.6249 -2.1679 33 1 1.2527 4.2701 -2.7175 34 1 -1.2266 4.3135 -4.4507 35 1 0.4288 3.9582 -4.9998 36 1 -2.0906 2.1691 -8.5448 37 1 3.3871 3.5867 -0.2725 38 1 4.3486 3.1958 1.1917 39 1 6.2117 2.3933 -0.1093 40 1 5.6382 3.7560 -1.1237 41 1 4.8637 -0.0040 -0.8176 42 1 3.4516 0.4777 -1.7987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378857084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:27 Heat of formation + Delta-G solvation = -103.572243 kcal Electronic energy + Delta-G solvation = -20099.609047 eV Core-core repulsion = 17079.328800 eV Total energy + Delta-G solvation = -3020.280247 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.75679 -37.51988 -36.40263 -32.95813 -32.23361 -31.83368 -29.45020 -28.51429 -27.04282 -24.98102 -23.11448 -21.87389 -21.45851 -21.26769 -19.67974 -16.90143 -16.64362 -16.10717 -15.98689 -15.48940 -14.95792 -14.83706 -14.53253 -14.38959 -13.78021 -13.24017 -12.96801 -12.72983 -12.64896 -12.62388 -12.34355 -11.97900 -11.62177 -11.52371 -11.30648 -11.13887 -10.98692 -10.82387 -10.79699 -10.67235 -10.49933 -10.26503 -9.84405 -9.50044 -9.16257 -8.81940 -8.43852 -8.14656 -6.09765 -4.08467 3.27410 3.33951 3.35564 4.02518 4.31394 4.37878 4.46475 4.64764 4.73851 5.00425 5.04040 5.07279 5.17176 5.22235 5.27523 5.31751 5.43499 5.54413 5.57402 5.65374 5.74783 5.77490 5.79863 5.88294 5.92043 5.95388 5.99878 6.07358 6.14243 6.23279 6.26917 6.33519 6.65237 7.02443 7.03862 7.24139 7.61403 7.66638 8.04297 8.68890 9.00847 9.49977 11.03315 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021910 B = 0.004808 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.659773 B = 5821.857389 C = 6286.005855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.148 4.148 3 C 0.093 3.907 4 H 0.069 0.931 5 N -0.675 5.675 6 C 0.066 3.934 7 C 0.059 3.941 8 O -0.382 6.382 9 C 0.171 3.829 10 C -0.517 4.517 11 H 0.081 0.919 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.876 3.124 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.267 1.267 18 C -0.110 4.110 19 H 0.076 0.924 20 C -0.143 4.143 21 C 0.049 3.951 22 O -0.370 6.370 23 C 0.063 3.937 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.357 0.643 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.000 1.000 35 H -0.001 1.001 36 H 0.266 0.734 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.517 0.754 19.111 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.186 4.186 3 C -0.017 4.017 4 H 0.087 0.913 5 N -0.308 5.308 6 C -0.063 4.063 7 C -0.019 4.019 8 O -0.302 6.302 9 C 0.096 3.904 10 C -0.555 4.555 11 H 0.099 0.901 12 C -0.129 4.129 13 N -0.535 5.535 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.130 4.130 19 H 0.094 0.906 20 C -0.180 4.180 21 C -0.028 4.028 22 O -0.288 6.288 23 C -0.014 4.014 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.178 0.822 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.018 0.982 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.958 1.006 18.745 21.736 hybrid contribution -0.738 0.586 -0.065 0.945 sum 10.220 1.592 18.679 21.352 Atomic orbital electron populations 1.21849 0.95384 1.01865 1.02407 1.22183 0.96564 0.97358 1.02527 1.21535 0.93800 0.93353 0.93018 0.91288 1.60449 1.41743 1.19925 1.08696 1.22038 0.92968 0.94979 0.96330 1.22371 0.97298 0.92527 0.89684 1.87837 1.84063 1.35329 1.22935 1.20559 0.93878 0.94762 0.81181 1.20882 1.42463 0.96945 0.95234 0.90066 1.24760 0.94667 0.97381 0.96139 1.69880 1.43673 1.33352 1.06584 0.86848 0.78437 0.85459 0.78983 1.19872 1.20847 1.19167 1.22609 0.95834 0.96415 0.98120 0.90589 1.23097 0.97901 0.97322 0.99704 1.23445 0.95916 0.93874 0.89574 1.88908 1.70816 1.37450 1.31661 1.23070 0.93790 0.90107 0.94460 0.93083 0.91643 0.92620 0.91168 0.91763 0.82170 0.94457 0.90920 0.94336 0.93440 0.98185 0.98301 0.92405 0.89184 0.91492 0.93187 0.89542 0.93692 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.08 37.16 0.34 -1.41 16 2 C -0.15 -1.50 4.96 -26.73 -0.13 -1.63 16 3 C 0.09 1.00 1.84 -67.72 -0.12 0.87 16 4 H 0.07 0.70 7.50 -51.93 -0.39 0.31 16 5 N -0.67 -9.21 4.46 -106.73 -0.48 -9.69 16 6 C 0.07 0.92 5.59 -3.83 -0.02 0.90 16 7 C 0.06 1.04 6.28 37.16 0.23 1.27 16 8 O -0.38 -8.75 9.94 -35.23 -0.35 -9.10 16 9 C 0.17 4.40 4.76 36.01 0.17 4.57 16 10 C -0.52 -15.47 9.99 -34.44 -0.34 -15.81 16 11 H 0.08 2.64 8.06 -52.49 -0.42 2.22 16 12 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 13 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 14 Si 0.88 21.72 27.47 -169.99 -4.67 17.06 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 18 C -0.11 -1.12 2.93 -89.10 -0.26 -1.38 16 19 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 20 C -0.14 -1.44 6.59 -24.73 -0.16 -1.60 16 21 C 0.05 0.54 7.72 38.21 0.29 0.83 16 22 O -0.37 -5.40 11.52 -35.23 -0.41 -5.80 16 23 C 0.06 0.76 6.65 37.73 0.25 1.01 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.88 6.66 -51.93 -0.35 0.53 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.76 6.93 -51.93 -0.36 0.40 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.36 5.65 7.11 -39.29 -0.28 5.37 16 30 H 0.04 0.53 6.79 -51.93 -0.35 0.17 16 31 H 0.07 0.85 8.01 -51.93 -0.42 0.43 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.00 0.01 7.20 -51.93 -0.37 -0.36 16 35 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 16 36 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.09 1.05 7.31 -51.93 -0.38 0.67 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 1.17 6.07 -51.93 -0.32 0.85 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -31.77 328.87 -7.45 -39.22 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.42 Total: 0.78 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 0.14 Total: -10.33 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.30 Total: -36.77 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.76 Total: -14.91 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.77 -7.45 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378857084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.352 kcal (2) G-P(sol) polarization free energy of solvation -31.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds