Wall clock time and date at job start Mon Mar 30 2020 05:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47020 * 2 1 4 4 H 1.08999 * 109.47383 * 54.44189 * 3 2 1 5 5 N 1.46897 * 109.47277 * 294.44490 * 3 2 1 6 6 C 1.46896 * 111.00123 * 108.00868 * 5 3 2 7 7 C 1.53002 * 109.47193 * 174.64393 * 6 5 3 8 8 O 1.42898 * 109.47371 * 64.99538 * 7 6 5 9 9 C 1.42899 * 114.00236 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47159 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00066 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00108 * 179.97438 * 10 9 8 13 13 N 1.31521 * 120.00039 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 119.99910 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47323 * 90.00163 * 14 12 10 16 16 H 1.48501 * 109.47018 * 209.99588 * 14 12 10 17 17 H 1.48492 * 109.47306 * 329.99830 * 14 12 10 18 18 C 1.53002 * 109.47028 * 174.44360 * 3 2 1 19 19 H 1.09002 * 110.43436 * 303.90935 * 18 3 2 20 20 C 1.54807 * 110.48855 * 181.22203 * 18 3 2 21 21 C 1.54992 * 102.09332 * 220.44154 * 20 18 3 22 22 O 1.44381 * 103.48882 * 37.02204 * 21 20 18 23 23 C 1.43744 * 106.97565 * 319.94059 * 22 21 20 24 24 H 1.09002 * 109.46678 * 303.98554 * 1 2 3 25 25 H 1.08995 * 109.47473 * 63.98643 * 1 2 3 26 26 H 1.08996 * 109.46909 * 183.99210 * 1 2 3 27 27 H 1.09001 * 109.46681 * 240.00147 * 2 1 3 28 28 H 1.09001 * 109.46996 * 119.99919 * 2 1 3 29 29 H 1.00898 * 110.99914 * 344.04687 * 5 3 2 30 30 H 1.08998 * 109.47115 * 294.63562 * 6 5 3 31 31 H 1.08998 * 109.47689 * 54.64348 * 6 5 3 32 32 H 1.08995 * 109.47608 * 184.99932 * 7 6 5 33 33 H 1.09008 * 109.47074 * 304.99741 * 7 6 5 34 34 H 1.08996 * 109.47282 * 300.00012 * 9 8 7 35 35 H 1.09001 * 109.47089 * 60.00203 * 9 8 7 36 36 H 0.96997 * 119.99510 * 179.97438 * 13 12 10 37 37 H 1.09002 * 110.90941 * 338.63871 * 20 18 3 38 38 H 1.09000 * 110.90943 * 102.24218 * 20 18 3 39 39 H 1.09000 * 110.62206 * 278.51967 * 21 20 18 40 40 H 1.09000 * 110.62166 * 155.51967 * 21 20 18 41 41 H 1.09001 * 109.87714 * 267.08960 * 23 22 21 42 42 H 1.08996 * 109.87790 * 145.93722 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5977 1.9842 0.8360 5 7 1.6629 2.0952 -1.2608 6 6 0.5967 3.0822 -1.0443 7 6 0.3244 3.8333 -2.3491 8 8 -0.1936 2.9246 -3.3227 9 6 -0.4829 3.5281 -4.5853 10 6 -1.0210 2.4841 -5.5296 11 1 -1.1306 1.4619 -5.1988 12 6 -1.3733 2.8340 -6.8158 13 7 -1.8424 1.9228 -7.6401 14 14 -1.1830 4.6019 -7.3882 15 1 0.1692 4.7902 -7.9727 16 1 -2.2124 4.9032 -8.4152 17 1 -1.3544 5.5177 -6.2320 18 6 3.5637 1.4447 0.1397 19 1 3.8644 0.9031 1.0365 20 6 4.1026 2.8956 0.1731 21 6 5.3815 2.7870 -0.6957 22 8 5.0056 1.8563 -1.7335 23 6 4.2207 0.8264 -1.1095 24 1 -0.3633 0.5745 0.8522 25 1 -0.3634 0.4507 -0.9235 26 1 -0.3633 -1.0251 0.0715 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.3899 1.4138 -1.9531 30 1 -0.3111 2.5718 -0.7228 31 1 0.9073 3.7900 -0.2757 32 1 -0.4026 4.6249 -2.1679 33 1 1.2527 4.2701 -2.7175 34 1 -1.2266 4.3135 -4.4507 35 1 0.4288 3.9582 -4.9998 36 1 -2.0906 2.1691 -8.5448 37 1 3.3871 3.5867 -0.2725 38 1 4.3486 3.1958 1.1917 39 1 6.2117 2.3933 -0.1093 40 1 5.6382 3.7560 -1.1237 41 1 4.8637 -0.0040 -0.8176 42 1 3.4516 0.4777 -1.7987 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378857084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:46:26 Heat of formation + Delta-G solvation = -126.233693 kcal Electronic energy + Delta-G solvation = -20100.591721 eV Core-core repulsion = 17079.328800 eV Total energy + Delta-G solvation = -3021.262921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66456 -38.91652 -37.70556 -34.94716 -33.63621 -32.71087 -30.58632 -30.07257 -28.53465 -25.97157 -24.06892 -23.91388 -22.70396 -22.12132 -20.55694 -19.05803 -17.65215 -17.49603 -16.99487 -16.88381 -16.37781 -16.18203 -15.82628 -15.67584 -15.01586 -14.65136 -14.43308 -14.05241 -13.76944 -13.58019 -13.46653 -13.26211 -13.14083 -12.77026 -12.58916 -12.46002 -12.25290 -12.07595 -11.89686 -11.84462 -11.66652 -11.37613 -11.35441 -11.26056 -10.92764 -10.43958 -10.33442 -9.18136 -8.38073 -6.45443 1.32327 1.35146 1.45732 2.28539 2.94836 3.10836 3.16146 3.32567 3.63105 3.83568 4.14044 4.14840 4.22277 4.28383 4.36924 4.42292 4.45459 4.49766 4.54337 4.60630 4.71453 4.77467 4.79715 4.89436 4.93960 4.97280 5.00507 5.01119 5.06042 5.11510 5.15396 5.26282 5.37621 5.43380 5.45086 5.93587 6.14389 6.25761 6.46782 6.58273 6.75610 7.19108 8.79031 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021910 B = 0.004808 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.659773 B = 5821.857389 C = 6286.005855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.143 4.143 3 C 0.096 3.904 4 H 0.084 0.916 5 N -0.684 5.684 6 C 0.074 3.926 7 C 0.052 3.948 8 O -0.403 6.403 9 C 0.183 3.817 10 C -0.543 4.543 11 H 0.031 0.969 12 C 0.014 3.986 13 N -0.942 5.942 14 Si 0.954 3.046 15 H -0.262 1.262 16 H -0.272 1.272 17 H -0.246 1.246 18 C -0.103 4.103 19 H 0.103 0.897 20 C -0.137 4.137 21 C 0.042 3.958 22 O -0.408 6.408 23 C 0.058 3.942 24 H 0.062 0.938 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.340 0.660 30 H 0.033 0.967 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.010 0.990 35 H 0.005 0.995 36 H 0.273 0.727 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.487 2.721 21.167 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.181 4.181 3 C -0.014 4.014 4 H 0.102 0.898 5 N -0.315 5.315 6 C -0.055 4.055 7 C -0.025 4.025 8 O -0.323 6.323 9 C 0.107 3.893 10 C -0.581 4.581 11 H 0.049 0.951 12 C -0.184 4.184 13 N -0.581 5.581 14 Si 0.775 3.225 15 H -0.187 1.187 16 H -0.197 1.197 17 H -0.170 1.170 18 C -0.123 4.123 19 H 0.121 0.879 20 C -0.175 4.175 21 C -0.034 4.034 22 O -0.328 6.328 23 C -0.019 4.019 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.158 0.842 30 H 0.051 0.949 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.023 0.977 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.938 2.971 20.842 24.201 hybrid contribution -1.018 -0.135 -0.656 1.219 sum 10.920 2.836 20.185 23.124 Atomic orbital electron populations 1.21807 0.96203 1.01993 1.01169 1.22139 0.95699 0.97269 1.03012 1.21611 0.94419 0.93451 0.91916 0.89808 1.60496 1.41342 1.19859 1.09850 1.22028 0.93172 0.95384 0.94898 1.22709 0.97288 0.92768 0.89782 1.87811 1.84537 1.37152 1.22790 1.20250 0.93916 0.93329 0.81821 1.21151 1.43801 0.96023 0.97083 0.95076 1.25809 0.93632 1.03105 0.95852 1.70031 1.44480 1.36322 1.07306 0.85629 0.79074 0.78608 0.79158 1.18670 1.19663 1.16992 1.22620 0.94908 0.96728 0.98009 0.87888 1.23063 0.96873 0.96733 1.00818 1.23652 0.97053 0.93453 0.89277 1.88863 1.71367 1.38632 1.33902 1.23139 0.93575 0.90317 0.94854 0.91886 0.94815 0.92232 0.92511 0.89348 0.84157 0.94855 0.87783 0.92841 0.93576 0.97209 0.97720 0.91821 0.90857 0.88750 0.91286 0.89481 0.92376 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.08 71.98 0.65 -2.69 16 2 C -0.14 -2.72 4.96 30.59 0.15 -2.56 16 3 C 0.10 1.87 1.84 44.91 0.08 1.95 16 4 H 0.08 1.43 7.50 -2.39 -0.02 1.41 16 5 N -0.68 -18.38 4.46 -491.60 -2.19 -20.57 16 6 C 0.07 1.97 5.59 86.30 0.48 2.45 16 7 C 0.05 1.76 6.28 71.98 0.45 2.21 16 8 O -0.40 -18.78 9.94 -148.98 -1.48 -20.26 16 9 C 0.18 9.40 4.76 71.24 0.34 9.74 16 10 C -0.54 -33.63 9.99 25.60 0.26 -33.37 16 11 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 12 C 0.01 0.84 5.47 84.65 0.46 1.30 16 13 N -0.94 -60.09 13.96 21.45 0.30 -59.79 16 14 Si 0.95 44.39 27.47 68.60 1.88 46.27 16 15 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 18 C -0.10 -1.84 2.93 -9.81 -0.03 -1.87 16 19 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 20 C -0.14 -2.39 6.59 31.89 0.21 -2.18 16 21 C 0.04 0.85 7.72 72.66 0.56 1.41 16 22 O -0.41 -11.78 11.52 -148.98 -1.72 -13.50 16 23 C 0.06 1.37 6.65 72.35 0.48 1.85 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.03 0.93 6.66 -2.39 -0.02 0.92 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.24 6.93 -2.39 -0.02 1.23 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.34 11.20 7.11 -89.70 -0.64 10.57 16 30 H 0.03 0.91 6.79 -2.39 -0.02 0.90 16 31 H 0.10 2.12 8.01 -2.39 -0.02 2.10 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.58 8.14 -2.38 -0.02 1.57 16 34 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 35 H 0.01 0.25 7.57 -2.39 -0.02 0.24 16 36 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 37 H 0.07 1.54 7.31 -2.39 -0.02 1.52 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.81 6.07 -2.39 -0.01 1.79 16 Total: -1.00 -71.43 328.87 1.18 -70.24 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.29 Total: 19.37 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 4.10 Total: -21.77 kcal Atomic # 7 Polarization: -78.47 SS G_CDS: -1.89 Total: -80.37 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -3.20 Total: -33.76 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Total: -71.43 1.18 -70.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378857084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.990 kcal (2) G-P(sol) polarization free energy of solvation -71.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds