Wall clock time and date at job start Mon Mar 30 2020 04:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 116.99958 * 2 1 4 4 O 1.20829 * 119.99561 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99919 * 179.72730 * 3 2 1 6 6 N 1.46894 * 112.85436 * 35.95419 * 5 3 2 7 7 C 1.46898 * 111.00120 * 64.83527 * 6 5 3 8 8 C 1.52999 * 109.47084 * 185.21775 * 7 6 5 9 9 O 1.42903 * 109.47055 * 65.00251 * 8 7 6 10 10 C 1.42902 * 113.99752 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.46814 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00241 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00023 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00127 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99898 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47397 * 89.99600 * 15 13 11 17 17 H 1.48496 * 109.47271 * 209.99854 * 15 13 11 18 18 H 1.48503 * 109.47072 * 329.99701 * 15 13 11 19 19 C 1.53784 * 113.61130 * 264.75635 * 5 3 2 20 20 C 1.53953 * 87.02175 * 220.05143 * 19 5 3 21 21 C 1.53779 * 87.11018 * 25.36278 * 20 19 5 22 22 H 1.09000 * 109.46571 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47143 * 300.00907 * 1 2 3 24 24 H 1.09004 * 109.46601 * 60.00463 * 1 2 3 25 25 H 1.00900 * 111.00170 * 188.78967 * 6 5 3 26 26 H 1.09003 * 109.46845 * 305.21775 * 7 6 5 27 27 H 1.09003 * 109.47040 * 65.21616 * 7 6 5 28 28 H 1.09008 * 109.47227 * 184.99997 * 8 7 6 29 29 H 1.08999 * 109.47155 * 304.99738 * 8 7 6 30 30 H 1.09006 * 109.46849 * 299.99544 * 10 9 8 31 31 H 1.08994 * 109.47465 * 59.99453 * 10 9 8 32 32 H 0.97005 * 119.99925 * 179.97438 * 14 13 11 33 33 H 1.09002 * 113.61373 * 334.57154 * 19 5 3 34 34 H 1.09000 * 113.61473 * 105.47387 * 19 5 3 35 35 H 1.09000 * 113.53477 * 270.81076 * 20 19 5 36 36 H 1.08993 * 113.74391 * 139.94584 * 20 19 5 37 37 H 1.09002 * 113.61180 * 220.09041 * 21 20 19 38 38 H 1.08995 * 113.69151 * 89.20356 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0062 6 7 4.1967 0.2088 -0.7836 7 6 3.8623 0.3408 -2.2079 8 6 4.4265 -0.8553 -2.9772 9 8 3.7735 -2.0506 -2.5448 10 6 4.2299 -3.2333 -3.2045 11 6 3.4781 -4.4265 -2.6733 12 1 2.7272 -4.2949 -1.9083 13 6 3.7488 -5.6862 -3.1641 14 7 3.0930 -6.7276 -2.7002 15 14 5.0479 -5.9140 -4.4869 16 1 6.3680 -6.1497 -3.8489 17 1 4.6924 -7.0804 -5.3343 18 1 5.1162 -4.6928 -5.3291 19 6 4.1687 1.4388 1.4116 20 6 5.1673 2.4263 0.7809 21 6 4.1109 2.6784 -0.3078 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 5.1963 0.1998 -0.6462 26 1 2.7791 0.3704 -2.3255 27 1 4.2955 1.2615 -2.5990 28 1 4.2561 -0.7140 -4.0446 29 1 5.4968 -0.9370 -2.7878 30 1 4.0557 -3.1415 -4.2766 31 1 5.2960 -3.3642 -3.0195 32 1 3.2832 -7.6138 -3.0458 33 1 3.4890 1.9022 2.1267 34 1 4.6343 0.5311 1.7957 35 1 6.0738 1.9498 0.4077 36 1 5.3724 3.2990 1.4008 37 1 4.5299 2.7700 -1.3098 38 1 3.4148 3.4812 -0.0650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382111146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:32 Heat of formation + Delta-G solvation = -102.928140 kcal Electronic energy + Delta-G solvation = -19741.603664 eV Core-core repulsion = 16585.518253 eV Total energy + Delta-G solvation = -3156.085411 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03033 -38.86669 -36.97204 -36.19985 -33.89575 -32.47369 -29.17024 -28.03517 -27.06235 -26.00442 -25.36616 -21.94717 -21.75832 -21.43862 -19.09962 -17.68780 -16.99405 -16.77587 -16.31991 -15.75998 -15.57772 -15.08032 -14.96304 -14.29392 -13.84974 -13.51017 -13.44914 -13.20925 -12.75077 -12.55863 -12.30730 -12.15407 -11.88539 -11.54757 -11.39370 -11.17039 -10.88846 -10.83164 -10.69887 -10.60264 -10.44614 -10.22399 -9.82230 -9.11189 -8.78705 -8.43825 -8.38250 -6.06233 -4.04200 2.18352 2.86107 3.27238 3.34104 3.35430 3.81149 4.16191 4.35648 4.39518 4.53975 4.60803 4.73099 5.10654 5.24963 5.25212 5.29219 5.31828 5.40285 5.47999 5.52408 5.62438 5.68586 5.70958 5.75162 5.83003 5.88235 5.98270 6.15681 6.50298 6.64833 6.84665 7.05505 7.30678 7.65970 7.87874 8.10562 8.74330 9.08154 9.53702 11.07002 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.025724 B = 0.004917 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.213089 B = 5693.109889 C = 6285.356259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.324 6.324 3 C 0.485 3.515 4 O -0.520 6.520 5 C 0.097 3.903 6 N -0.636 5.636 7 C 0.062 3.938 8 C 0.064 3.936 9 O -0.361 6.361 10 C 0.167 3.833 11 C -0.513 4.513 12 H 0.084 0.916 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.875 3.125 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.267 1.267 19 C -0.120 4.120 20 C -0.139 4.139 21 C -0.157 4.157 22 H 0.105 0.895 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.351 0.649 26 H 0.077 0.923 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.038 0.962 30 H -0.001 1.001 31 H -0.003 1.003 32 H 0.265 0.735 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.939 18.733 5.072 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.238 6.238 3 C 0.327 3.673 4 O -0.409 6.409 5 C 0.003 3.997 6 N -0.269 5.269 7 C -0.066 4.066 8 C -0.014 4.014 9 O -0.279 6.279 10 C 0.092 3.908 11 C -0.551 4.551 12 H 0.102 0.898 13 C -0.130 4.130 14 N -0.536 5.536 15 Si 0.702 3.298 16 H -0.200 1.200 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.158 4.158 20 C -0.177 4.177 21 C -0.197 4.197 22 H 0.123 0.877 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.171 0.829 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.017 0.983 31 H 0.014 0.986 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.035 18.311 5.309 19.173 hybrid contribution 1.169 0.488 -1.252 1.781 sum 3.204 18.798 4.057 19.496 Atomic orbital electron populations 1.23308 0.76989 1.04123 1.01722 1.86768 1.22554 1.32072 1.82361 1.23326 0.91015 0.81501 0.71419 1.90624 1.66670 1.36843 1.46738 1.21984 0.87440 0.91944 0.98307 1.60174 1.15690 1.43280 1.07745 1.22030 1.01952 0.95809 0.86857 1.22251 0.95793 0.87237 0.96148 1.88061 1.62149 1.13626 1.64101 1.20592 0.94248 0.84039 0.91960 1.20905 1.22107 0.88850 1.23241 0.89826 1.24766 0.96185 0.95547 0.96520 1.69881 1.41622 0.98957 1.43126 0.86866 0.82403 0.78126 0.82402 1.19999 1.20887 1.19219 1.23070 0.98162 1.00782 0.93741 1.22862 0.97009 0.99846 0.97970 1.23644 0.98871 0.97087 1.00052 0.87683 0.92404 0.92208 0.82867 0.90461 0.94020 0.93875 0.94394 0.98307 0.98579 0.92475 0.89006 0.88986 0.89606 0.90370 0.90619 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.49 16 2 O -0.32 -5.40 10.41 -39.27 -0.41 -5.81 16 3 C 0.48 7.44 6.13 36.00 0.22 7.66 16 4 O -0.52 -8.49 15.66 -18.75 -0.29 -8.79 16 5 C 0.10 1.23 1.11 -131.95 -0.15 1.08 16 6 N -0.64 -8.96 6.21 -100.31 -0.62 -9.58 16 7 C 0.06 0.90 5.70 -3.83 -0.02 0.88 16 8 C 0.06 1.10 6.26 37.16 0.23 1.33 16 9 O -0.36 -8.49 10.27 -35.23 -0.36 -8.85 16 10 C 0.17 4.29 4.76 36.00 0.17 4.46 16 11 C -0.51 -15.45 9.99 -34.44 -0.34 -15.80 16 12 H 0.08 2.77 8.06 -52.49 -0.42 2.35 16 13 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 14 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 15 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 16 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 19 C -0.12 -1.21 7.35 -25.83 -0.19 -1.40 16 20 C -0.14 -1.13 7.75 -25.83 -0.20 -1.33 16 21 C -0.16 -1.59 7.03 -25.92 -0.18 -1.77 16 22 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 23 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 24 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 25 H 0.35 4.19 7.95 -39.29 -0.31 3.88 16 26 H 0.08 1.27 7.25 -51.93 -0.38 0.89 16 27 H 0.04 0.48 6.83 -51.93 -0.35 0.13 16 28 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 31 H 0.00 -0.09 7.57 -51.93 -0.39 -0.48 16 32 H 0.27 7.64 8.31 -40.82 -0.34 7.31 16 33 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.62 7.73 -51.93 -0.40 0.22 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.72 6.78 -51.93 -0.35 0.37 16 38 H 0.10 1.08 7.34 -51.93 -0.38 0.70 16 LS Contribution 316.93 15.07 4.78 4.78 Total: -1.00 -34.35 316.93 -6.21 -40.56 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.91 Total: -0.66 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 0.51 Total: -1.37 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.15 Total: -36.73 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -1.06 Total: -23.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.35 -6.21 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382111146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.371 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds