Wall clock time and date at job start Mon Mar 30 2020 04:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 116.99958 * 2 1 4 4 O 1.20829 * 119.99561 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99919 * 179.72730 * 3 2 1 6 6 N 1.46894 * 112.85436 * 35.95419 * 5 3 2 7 7 C 1.46898 * 111.00120 * 64.83527 * 6 5 3 8 8 C 1.52999 * 109.47084 * 185.21775 * 7 6 5 9 9 O 1.42903 * 109.47055 * 65.00251 * 8 7 6 10 10 C 1.42902 * 113.99752 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.46814 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00241 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00023 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00127 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99898 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47397 * 89.99600 * 15 13 11 17 17 H 1.48496 * 109.47271 * 209.99854 * 15 13 11 18 18 H 1.48503 * 109.47072 * 329.99701 * 15 13 11 19 19 C 1.53784 * 113.61130 * 264.75635 * 5 3 2 20 20 C 1.53953 * 87.02175 * 220.05143 * 19 5 3 21 21 C 1.53779 * 87.11018 * 25.36278 * 20 19 5 22 22 H 1.09000 * 109.46571 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47143 * 300.00907 * 1 2 3 24 24 H 1.09004 * 109.46601 * 60.00463 * 1 2 3 25 25 H 1.00900 * 111.00170 * 188.78967 * 6 5 3 26 26 H 1.09003 * 109.46845 * 305.21775 * 7 6 5 27 27 H 1.09003 * 109.47040 * 65.21616 * 7 6 5 28 28 H 1.09008 * 109.47227 * 184.99997 * 8 7 6 29 29 H 1.08999 * 109.47155 * 304.99738 * 8 7 6 30 30 H 1.09006 * 109.46849 * 299.99544 * 10 9 8 31 31 H 1.08994 * 109.47465 * 59.99453 * 10 9 8 32 32 H 0.97005 * 119.99925 * 179.97438 * 14 13 11 33 33 H 1.09002 * 113.61373 * 334.57154 * 19 5 3 34 34 H 1.09000 * 113.61473 * 105.47387 * 19 5 3 35 35 H 1.09000 * 113.53477 * 270.81076 * 20 19 5 36 36 H 1.08993 * 113.74391 * 139.94584 * 20 19 5 37 37 H 1.09002 * 113.61180 * 220.09041 * 21 20 19 38 38 H 1.08995 * 113.69151 * 89.20356 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0062 6 7 4.1967 0.2088 -0.7836 7 6 3.8623 0.3408 -2.2079 8 6 4.4265 -0.8553 -2.9772 9 8 3.7735 -2.0506 -2.5448 10 6 4.2299 -3.2333 -3.2045 11 6 3.4781 -4.4265 -2.6733 12 1 2.7272 -4.2949 -1.9083 13 6 3.7488 -5.6862 -3.1641 14 7 3.0930 -6.7276 -2.7002 15 14 5.0479 -5.9140 -4.4869 16 1 6.3680 -6.1497 -3.8489 17 1 4.6924 -7.0804 -5.3343 18 1 5.1162 -4.6928 -5.3291 19 6 4.1687 1.4388 1.4116 20 6 5.1673 2.4263 0.7809 21 6 4.1109 2.6784 -0.3078 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 5.1963 0.1998 -0.6462 26 1 2.7791 0.3704 -2.3255 27 1 4.2955 1.2615 -2.5990 28 1 4.2561 -0.7140 -4.0446 29 1 5.4968 -0.9370 -2.7878 30 1 4.0557 -3.1415 -4.2766 31 1 5.2960 -3.3642 -3.0195 32 1 3.2832 -7.6138 -3.0458 33 1 3.4890 1.9022 2.1267 34 1 4.6343 0.5311 1.7957 35 1 6.0738 1.9498 0.4077 36 1 5.3724 3.2990 1.4008 37 1 4.5299 2.7700 -1.3098 38 1 3.4148 3.4812 -0.0650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382111146.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:31 Heat of formation + Delta-G solvation = -128.410380 kcal Electronic energy + Delta-G solvation = -19742.708657 eV Core-core repulsion = 16585.518253 eV Total energy + Delta-G solvation = -3157.190404 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 257.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.08907 -39.90840 -38.59818 -37.43422 -35.24553 -34.51374 -30.70356 -29.45850 -28.51658 -26.81631 -26.38783 -23.91775 -23.10458 -22.47262 -20.06926 -19.02742 -18.80661 -18.00167 -17.57063 -17.32028 -16.71825 -16.51246 -16.21973 -15.93407 -15.10235 -14.73108 -14.64295 -14.53784 -14.33895 -13.95504 -13.50566 -13.37610 -13.01991 -12.95746 -12.72425 -12.53001 -12.38596 -12.11510 -11.81041 -11.79001 -11.70967 -11.60990 -11.30046 -11.21715 -10.88356 -10.25591 -9.42489 -8.33058 -6.40204 1.02664 1.35276 1.38895 1.49552 1.81319 2.32664 2.83087 2.99556 3.13494 3.33180 3.53207 3.74008 3.77987 4.17834 4.18989 4.24192 4.25698 4.29796 4.47568 4.57197 4.63101 4.64370 4.67051 4.74910 4.88613 4.95189 4.97746 5.04538 5.06633 5.27914 5.36372 5.49391 5.80898 6.01087 6.38196 6.64613 6.71755 6.86271 7.24496 8.84433 Molecular weight = 257.15amu Principal moments of inertia in cm(-1) A = 0.025724 B = 0.004917 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.213089 B = 5693.109889 C = 6285.356259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.353 6.353 3 C 0.478 3.522 4 O -0.537 6.537 5 C 0.085 3.915 6 N -0.656 5.656 7 C 0.070 3.930 8 C 0.054 3.946 9 O -0.392 6.392 10 C 0.179 3.821 11 C -0.541 4.541 12 H 0.027 0.973 13 C 0.011 3.989 14 N -0.945 5.945 15 Si 0.957 3.043 16 H -0.258 1.258 17 H -0.275 1.275 18 H -0.245 1.245 19 C -0.120 4.120 20 C -0.121 4.121 21 C -0.150 4.150 22 H 0.111 0.889 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.363 0.637 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.009 0.991 31 H 0.011 0.989 32 H 0.272 0.728 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.657 20.190 3.892 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.322 3.678 4 O -0.427 6.427 5 C -0.008 4.008 6 N -0.291 5.291 7 C -0.059 4.059 8 C -0.023 4.023 9 O -0.311 6.311 10 C 0.103 3.897 11 C -0.579 4.579 12 H 0.045 0.955 13 C -0.186 4.186 14 N -0.585 5.585 15 Si 0.779 3.221 16 H -0.183 1.183 17 H -0.201 1.201 18 H -0.169 1.169 19 C -0.158 4.158 20 C -0.158 4.158 21 C -0.189 4.189 22 H 0.130 0.870 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.186 0.814 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.029 0.971 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.104 0.896 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.755 19.799 4.145 20.779 hybrid contribution 0.192 0.059 -0.788 0.813 sum 4.948 19.857 3.357 20.738 Atomic orbital electron populations 1.23473 0.75847 1.04884 1.02496 1.86754 1.24145 1.33326 1.82540 1.24017 0.92289 0.80827 0.70643 1.90596 1.67379 1.37065 1.47655 1.22259 0.85464 0.93123 0.99967 1.60031 1.16715 1.44731 1.07585 1.21933 1.00467 0.96103 0.87368 1.22626 0.96790 0.85409 0.97442 1.88017 1.63547 1.14907 1.64647 1.20288 0.93971 0.83455 0.92000 1.21177 1.22089 0.91778 1.22838 0.95489 1.25859 0.98852 0.94611 0.99301 1.70047 1.43632 0.99841 1.44955 0.85583 0.78802 0.79053 0.78706 1.18298 1.20053 1.16854 1.23137 0.98656 1.01522 0.92463 1.22844 0.96420 0.99781 0.96751 1.23613 0.99103 0.94794 1.01427 0.87034 0.90983 0.92069 0.81397 0.93071 0.90236 0.92439 0.92199 0.97382 0.97093 0.91923 0.88902 0.89096 0.88026 0.88506 0.89572 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.35 -12.24 10.41 -51.47 -0.54 -12.77 16 3 C 0.48 14.84 6.13 71.23 0.44 15.28 16 4 O -0.54 -17.68 15.66 21.96 0.34 -17.33 16 5 C 0.09 2.06 1.11 3.31 0.00 2.07 16 6 N -0.66 -17.62 6.21 -471.29 -2.93 -20.55 16 7 C 0.07 1.92 5.70 86.30 0.49 2.42 16 8 C 0.05 1.77 6.26 71.98 0.45 2.22 16 9 O -0.39 -18.41 10.27 -148.98 -1.53 -19.94 16 10 C 0.18 9.03 4.76 71.24 0.34 9.37 16 11 C -0.54 -33.54 9.99 25.60 0.26 -33.28 16 12 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 13 C 0.01 0.67 5.47 84.66 0.46 1.13 16 14 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 15 Si 0.96 43.53 27.47 68.60 1.88 45.41 16 16 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.25 -10.21 6.54 99.48 0.65 -9.56 16 19 C -0.12 -2.24 7.35 31.18 0.23 -2.01 16 20 C -0.12 -1.58 7.75 31.18 0.24 -1.33 16 21 C -0.15 -2.68 7.03 31.12 0.22 -2.46 16 22 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 23 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 24 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 25 H 0.36 7.83 7.95 -89.69 -0.71 7.12 16 26 H 0.05 1.67 7.25 -2.39 -0.02 1.66 16 27 H 0.08 1.59 6.83 -2.39 -0.02 1.57 16 28 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.01 0.41 7.20 -2.38 -0.02 0.39 16 31 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 32 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 33 H 0.09 1.69 8.09 -2.39 -0.02 1.67 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.10 1.05 7.73 -2.39 -0.02 1.03 16 36 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.09 1.35 6.78 -2.39 -0.02 1.34 16 38 H 0.09 1.83 7.34 -2.39 -0.02 1.82 16 Total: -1.00 -77.12 316.93 2.14 -74.98 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.28 Total: 14.83 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 4.33 Total: -4.69 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -2.63 Total: -80.49 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -1.72 Total: -50.05 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -77.12 2.14 -74.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382111146.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.429 kcal (2) G-P(sol) polarization free energy of solvation -77.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds