Wall clock time and date at job start Mon Mar 30 2020 04:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48497 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46940 * 300.00016 * 3 2 1 6 6 H 1.48494 * 109.47151 * 60.00202 * 3 2 1 7 7 C 1.37879 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99989 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.46802 * 180.02562 * 9 7 2 11 11 C 1.42906 * 113.99874 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47213 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47144 * 65.00038 * 12 11 10 14 14 C 1.42903 * 114.00103 * 180.02562 * 13 12 11 15 15 H 1.09001 * 108.85640 * 28.55168 * 14 13 12 16 16 C 1.50478 * 108.87227 * 269.99921 * 14 13 12 17 17 C 1.54232 * 108.52471 * 145.07180 * 16 14 13 18 18 C 1.45549 * 112.40572 * 79.98575 * 17 16 14 19 19 C 1.54241 * 112.40369 * 298.06030 * 18 17 16 20 20 C 1.50474 * 108.68067 * 79.89314 * 19 18 17 21 21 C 1.53820 * 112.64125 * 266.10733 * 20 19 18 22 22 H 1.08997 * 108.65549 * 280.62534 * 21 20 19 23 23 N 1.46901 * 108.80861 * 162.32812 * 21 20 19 24 24 H 0.97000 * 119.99722 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47354 * 59.99473 * 9 7 2 26 26 H 1.09002 * 109.46540 * 299.99552 * 9 7 2 27 27 H 1.09004 * 109.46943 * 59.99515 * 11 10 9 28 28 H 1.09004 * 109.46710 * 299.99961 * 11 10 9 29 29 H 1.09003 * 109.47042 * 304.99902 * 12 11 10 30 30 H 1.09000 * 109.47237 * 184.99693 * 12 11 10 31 31 H 1.08997 * 109.63088 * 25.35607 * 16 14 13 32 32 H 1.09005 * 109.62626 * 264.78214 * 16 14 13 33 33 H 1.09000 * 108.89805 * 319.22955 * 17 16 14 34 34 H 1.09003 * 108.89714 * 200.73223 * 17 16 14 35 35 H 1.09003 * 108.89340 * 177.31230 * 18 17 16 36 36 H 1.08998 * 108.81910 * 58.76544 * 18 17 16 37 37 H 1.09002 * 109.62887 * 199.70039 * 19 18 17 38 38 H 1.09005 * 109.63035 * 320.08753 * 19 18 17 39 39 H 1.09003 * 108.87839 * 26.72307 * 20 19 18 40 40 H 1.08997 * 108.87774 * 145.16583 * 20 19 18 41 41 H 1.00906 * 110.99458 * 56.62413 * 23 21 20 42 42 H 1.00895 * 110.99883 * 180.57377 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 2.1797 -3.5853 -0.0015 11 6 1.5651 -4.8755 -0.0019 12 6 2.6480 -5.9562 -0.0023 13 8 3.3874 -5.8901 1.2188 14 6 4.4297 -6.8623 1.3205 15 1 4.7834 -7.1058 0.3187 16 6 3.8735 -8.1076 1.9564 17 6 4.5659 -9.3320 1.3238 18 6 5.8845 -9.5772 1.8891 19 6 6.8557 -8.4038 1.6464 20 6 6.5707 -7.3255 2.6565 21 6 5.5966 -6.2597 2.1261 22 1 6.1478 -5.5716 1.4852 23 7 5.0489 -5.5100 3.2645 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 0.9453 -4.9823 -0.8922 28 1 0.9446 -4.9826 0.8878 29 1 3.3216 -5.7954 -0.8441 30 1 2.1820 -6.9375 -0.0921 31 1 2.7996 -8.1615 1.7781 32 1 4.0690 -8.0898 3.0287 33 1 4.6670 -9.1655 0.2514 34 1 3.9435 -10.2121 1.4854 35 1 6.3000 -10.4783 1.4379 36 1 5.7830 -9.7351 2.9628 37 1 7.8832 -8.7494 1.7598 38 1 6.7106 -8.0105 0.6402 39 1 6.1378 -7.7817 3.5468 40 1 7.5084 -6.8423 2.9307 41 1 5.7876 -5.1001 3.8164 42 1 4.3965 -4.8060 2.9536 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385231331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:18 Heat of formation + Delta-G solvation = -114.222719 kcal Electronic energy + Delta-G solvation = -19898.644580 eV Core-core repulsion = 16877.902494 eV Total energy + Delta-G solvation = -3020.742087 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.68692 -37.26215 -36.07353 -34.26405 -32.72389 -31.57396 -29.67839 -28.70165 -26.77998 -24.23662 -23.83715 -22.37564 -21.86196 -20.67497 -19.17783 -16.87403 -16.48468 -16.19257 -15.87347 -15.35828 -15.03875 -14.60090 -14.33357 -14.09685 -13.94741 -13.68642 -13.57401 -13.20877 -12.75862 -12.37110 -11.99866 -11.91331 -11.41214 -11.27274 -11.11879 -10.88144 -10.82815 -10.76390 -10.63080 -10.56121 -10.39157 -10.27094 -9.96424 -9.34389 -9.05852 -8.80923 -8.42880 -8.14363 -6.09057 -4.10327 3.30158 3.36422 3.42967 3.78382 4.36003 4.38601 4.60516 4.73683 4.79343 4.89285 5.04413 5.10579 5.15902 5.23634 5.27452 5.31014 5.46864 5.55809 5.61980 5.67098 5.74025 5.89347 5.89951 5.95743 6.01037 6.03258 6.05402 6.11910 6.21655 6.27073 6.29551 6.40929 7.12893 7.27687 7.46012 7.58875 7.73885 7.81919 8.17899 8.61068 9.03546 9.54389 11.02654 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.032649 B = 0.003968 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.396056 B = 7054.289215 C = 7623.048049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.064 3.936 12 C 0.069 3.931 13 O -0.367 6.367 14 C 0.100 3.900 15 H 0.053 0.947 16 C -0.135 4.135 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.113 4.113 21 C 0.100 3.900 22 H 0.032 0.968 23 N -0.842 5.842 24 H 0.263 0.737 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.333 0.667 42 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.877 -18.670 3.087 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.008 4.008 13 O -0.285 6.285 14 C 0.042 3.958 15 H 0.071 0.929 16 C -0.172 4.172 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.012 4.012 22 H 0.050 0.950 23 N -0.374 5.374 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.144 0.856 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.572 -19.069 3.456 22.076 hybrid contribution 0.463 1.519 -0.730 1.747 sum 11.035 -17.551 2.726 20.910 Atomic orbital electron populations 1.69979 1.06089 1.26998 1.50762 1.24953 0.94975 0.99415 0.95213 0.86289 0.79998 0.82643 0.77612 1.19532 1.20867 1.20814 1.21091 0.94058 0.89370 1.50510 0.91573 1.20206 0.88813 0.83680 0.95341 1.87900 1.35175 1.12666 1.95166 1.22252 0.93761 0.85598 0.99740 1.22591 0.94114 0.97053 0.86998 1.88003 1.46968 1.55613 1.37944 1.21911 0.87831 0.88615 0.97458 0.92929 1.21844 0.99986 0.93353 1.02059 1.20491 0.96597 0.98432 1.00195 1.20496 0.95512 0.97959 1.01458 1.21334 0.98918 0.95653 0.99763 1.21345 0.98097 0.96202 0.99495 1.21694 0.92919 0.94893 0.91690 0.94998 1.58686 1.20897 1.34553 1.23227 0.92737 0.97847 0.97613 0.93209 0.93613 0.93137 0.92994 0.91340 0.90073 0.92453 0.92186 0.92504 0.91983 0.91800 0.91743 0.90703 0.92347 0.85579 0.82323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 2 C 0.06 1.62 5.46 -17.81 -0.10 1.53 16 3 Si 0.91 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -15.39 9.43 -34.44 -0.32 -15.71 16 8 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 9 C 0.19 5.46 5.69 36.01 0.20 5.66 16 10 O -0.39 -9.75 10.29 -40.08 -0.41 -10.16 16 11 C 0.06 1.24 6.32 37.15 0.23 1.47 16 12 C 0.07 1.10 6.02 37.15 0.22 1.32 16 13 O -0.37 -6.13 8.46 -40.08 -0.34 -6.47 16 14 C 0.10 1.32 1.92 -27.44 -0.05 1.26 16 15 H 0.05 0.66 6.22 -51.93 -0.32 0.33 16 16 C -0.13 -1.54 5.28 -27.35 -0.14 -1.69 16 17 C -0.12 -1.08 5.26 -29.60 -0.16 -1.24 16 18 C -0.12 -0.95 5.27 -29.60 -0.16 -1.11 16 19 C -0.12 -1.01 5.59 -27.34 -0.15 -1.17 16 20 C -0.11 -1.11 4.83 -27.57 -0.13 -1.25 16 21 C 0.10 1.25 3.09 -66.73 -0.21 1.05 16 22 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 23 N -0.84 -11.28 9.12 -3.83 -0.03 -11.32 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 26 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.05 0.67 7.86 -51.93 -0.41 0.26 16 31 H 0.07 0.83 7.61 -51.93 -0.40 0.43 16 32 H 0.08 0.99 6.98 -51.93 -0.36 0.63 16 33 H 0.06 0.51 7.47 -51.93 -0.39 0.13 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.51 7.48 -51.93 -0.39 0.12 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.58 6.99 -51.93 -0.36 0.22 16 39 H 0.07 0.77 6.63 -51.93 -0.34 0.42 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.33 3.80 8.99 -39.29 -0.35 3.45 16 42 H 0.36 5.74 7.85 -39.29 -0.31 5.43 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -31.73 327.75 -8.30 -40.02 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.40 Total: 2.28 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.76 Total: -9.86 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.70 Total: -37.84 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.75 Total: -16.63 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.73 -8.30 -40.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385231331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.200 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds