Wall clock time and date at job start Mon Mar 30 2020 04:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99904 * 2 1 4 4 H 1.48497 * 109.46926 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46940 * 300.00016 * 3 2 1 6 6 H 1.48494 * 109.47151 * 60.00202 * 3 2 1 7 7 C 1.37879 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99961 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99989 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.46802 * 180.02562 * 9 7 2 11 11 C 1.42906 * 113.99874 * 179.97438 * 10 9 7 12 12 C 1.52993 * 109.47213 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47144 * 65.00038 * 12 11 10 14 14 C 1.42903 * 114.00103 * 180.02562 * 13 12 11 15 15 H 1.09001 * 108.85640 * 28.55168 * 14 13 12 16 16 C 1.50478 * 108.87227 * 269.99921 * 14 13 12 17 17 C 1.54232 * 108.52471 * 145.07180 * 16 14 13 18 18 C 1.45549 * 112.40572 * 79.98575 * 17 16 14 19 19 C 1.54241 * 112.40369 * 298.06030 * 18 17 16 20 20 C 1.50474 * 108.68067 * 79.89314 * 19 18 17 21 21 C 1.53820 * 112.64125 * 266.10733 * 20 19 18 22 22 H 1.08997 * 108.65549 * 280.62534 * 21 20 19 23 23 N 1.46901 * 108.80861 * 162.32812 * 21 20 19 24 24 H 0.97000 * 119.99722 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47354 * 59.99473 * 9 7 2 26 26 H 1.09002 * 109.46540 * 299.99552 * 9 7 2 27 27 H 1.09004 * 109.46943 * 59.99515 * 11 10 9 28 28 H 1.09004 * 109.46710 * 299.99961 * 11 10 9 29 29 H 1.09003 * 109.47042 * 304.99902 * 12 11 10 30 30 H 1.09000 * 109.47237 * 184.99693 * 12 11 10 31 31 H 1.08997 * 109.63088 * 25.35607 * 16 14 13 32 32 H 1.09005 * 109.62626 * 264.78214 * 16 14 13 33 33 H 1.09000 * 108.89805 * 319.22955 * 17 16 14 34 34 H 1.09003 * 108.89714 * 200.73223 * 17 16 14 35 35 H 1.09003 * 108.89340 * 177.31230 * 18 17 16 36 36 H 1.08998 * 108.81910 * 58.76544 * 18 17 16 37 37 H 1.09002 * 109.62887 * 199.70039 * 19 18 17 38 38 H 1.09005 * 109.63035 * 320.08753 * 19 18 17 39 39 H 1.09003 * 108.87839 * 26.72307 * 20 19 18 40 40 H 1.08997 * 108.87774 * 145.16583 * 20 19 18 41 41 H 1.00906 * 110.99458 * 56.62413 * 23 21 20 42 42 H 1.00895 * 110.99883 * 180.57377 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 8 2.1797 -3.5853 -0.0015 11 6 1.5651 -4.8755 -0.0019 12 6 2.6480 -5.9562 -0.0023 13 8 3.3874 -5.8901 1.2188 14 6 4.4297 -6.8623 1.3205 15 1 4.7834 -7.1058 0.3187 16 6 3.8735 -8.1076 1.9564 17 6 4.5659 -9.3320 1.3238 18 6 5.8845 -9.5772 1.8891 19 6 6.8557 -8.4038 1.6464 20 6 6.5707 -7.3255 2.6565 21 6 5.5966 -6.2597 2.1261 22 1 6.1478 -5.5716 1.4852 23 7 5.0489 -5.5100 3.2645 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6241 -2.5575 0.8881 27 1 0.9453 -4.9823 -0.8922 28 1 0.9446 -4.9826 0.8878 29 1 3.3216 -5.7954 -0.8441 30 1 2.1820 -6.9375 -0.0921 31 1 2.7996 -8.1615 1.7781 32 1 4.0690 -8.0898 3.0287 33 1 4.6670 -9.1655 0.2514 34 1 3.9435 -10.2121 1.4854 35 1 6.3000 -10.4783 1.4379 36 1 5.7830 -9.7351 2.9628 37 1 7.8832 -8.7494 1.7598 38 1 6.7106 -8.0105 0.6402 39 1 6.1378 -7.7817 3.5468 40 1 7.5084 -6.8423 2.9307 41 1 5.7876 -5.1001 3.8164 42 1 4.3965 -4.8060 2.9536 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385231331.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:17 Heat of formation + Delta-G solvation = -136.190058 kcal Electronic energy + Delta-G solvation = -19899.597155 eV Core-core repulsion = 16877.902494 eV Total energy + Delta-G solvation = -3021.694662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.66025 -38.79625 -37.51362 -35.22168 -34.91915 -32.52634 -31.07746 -29.83820 -28.82521 -25.19363 -24.68399 -24.53972 -23.35359 -21.40131 -20.15174 -18.68016 -18.01780 -17.59358 -17.16992 -16.67739 -16.47916 -16.20892 -15.57164 -15.49082 -15.20974 -14.80080 -14.66028 -14.31515 -14.00256 -13.61469 -13.44777 -13.14910 -13.02798 -12.74676 -12.70726 -12.50873 -12.22629 -12.05360 -11.72137 -11.56338 -11.37533 -11.29687 -11.24793 -11.16409 -10.90024 -10.47443 -10.25568 -9.50524 -8.33726 -6.46190 1.38562 1.40388 1.54934 2.33568 2.64951 2.99912 3.16733 3.50734 3.72765 3.90727 4.02741 4.11021 4.19465 4.22050 4.27247 4.34255 4.40479 4.44888 4.56533 4.59303 4.66609 4.72470 4.86513 4.92568 5.00372 5.05755 5.14715 5.16356 5.22076 5.30017 5.34228 5.43276 5.50495 5.53110 5.55060 5.94304 6.17814 6.45542 6.53737 6.61473 6.80510 7.25793 8.78998 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.032649 B = 0.003968 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.396056 B = 7054.289215 C = 7623.048049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.405 6.405 11 C 0.053 3.947 12 C 0.076 3.924 13 O -0.395 6.395 14 C 0.097 3.903 15 H 0.061 0.939 16 C -0.129 4.129 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.118 4.118 20 C -0.105 4.105 21 C 0.096 3.904 22 H 0.017 0.983 23 N -0.845 5.845 24 H 0.271 0.729 25 H -0.011 1.011 26 H -0.016 1.016 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.342 0.658 42 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.216 -19.417 2.899 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.326 6.326 11 C -0.023 4.023 12 C -0.001 4.001 13 O -0.315 6.315 14 C 0.039 3.961 15 H 0.079 0.921 16 C -0.167 4.167 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.156 4.156 20 C -0.143 4.143 21 C -0.016 4.016 22 H 0.035 0.965 23 N -0.376 5.376 24 H 0.080 0.920 25 H 0.006 0.994 26 H 0.002 0.998 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.154 0.846 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.922 -19.855 3.272 23.390 hybrid contribution 0.013 1.677 -0.652 1.800 sum 11.935 -18.177 2.620 21.903 Atomic orbital electron populations 1.70079 1.07745 1.28633 1.50487 1.25974 0.95989 1.03393 0.93847 0.85119 0.78555 0.77229 0.78384 1.18969 1.19438 1.19571 1.21397 0.93993 0.90896 1.52290 0.92256 1.19837 0.88642 0.84739 0.93462 1.87855 1.35291 1.14199 1.95206 1.22617 0.95439 0.83941 1.00347 1.22552 0.93419 0.97133 0.86955 1.87970 1.48072 1.57255 1.38182 1.22133 0.87208 0.88553 0.98210 0.92141 1.21772 0.99740 0.93705 1.01480 1.20465 0.97091 0.97478 1.00147 1.20493 0.94898 0.98395 1.01583 1.21354 1.00072 0.95263 0.98890 1.21295 0.97520 0.95827 0.99636 1.21833 0.93113 0.95386 0.91239 0.96494 1.58720 1.21108 1.34063 1.23680 0.91981 0.99359 0.99837 0.91570 0.93974 0.92933 0.89387 0.92049 0.91069 0.92092 0.91030 0.90813 0.91970 0.90125 0.92210 0.91003 0.91493 0.84557 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.98 45.15 29.54 68.60 2.03 47.18 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -33.66 9.43 25.60 0.24 -33.41 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.15 5.69 71.24 0.41 12.55 16 10 O -0.41 -20.88 10.29 -144.34 -1.49 -22.36 16 11 C 0.05 2.08 6.32 71.98 0.45 2.54 16 12 C 0.08 2.35 6.02 71.98 0.43 2.78 16 13 O -0.40 -13.24 8.46 -144.34 -1.22 -14.46 16 14 C 0.10 2.47 1.92 30.14 0.06 2.53 16 15 H 0.06 1.43 6.22 -2.39 -0.01 1.42 16 16 C -0.13 -2.81 5.28 30.20 0.16 -2.65 16 17 C -0.11 -1.80 5.26 28.74 0.15 -1.65 16 18 C -0.12 -1.59 5.27 28.74 0.15 -1.44 16 19 C -0.12 -1.74 5.59 30.20 0.17 -1.57 16 20 C -0.10 -1.91 4.83 30.05 0.15 -1.77 16 21 C 0.10 2.38 3.09 45.55 0.14 2.52 16 22 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 23 N -0.84 -22.97 9.12 -166.05 -1.52 -24.48 16 24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 27 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.05 1.60 8.07 -2.39 -0.02 1.58 16 30 H 0.09 2.10 7.86 -2.39 -0.02 2.08 16 31 H 0.06 1.41 7.61 -2.39 -0.02 1.39 16 32 H 0.07 1.69 6.98 -2.38 -0.02 1.67 16 33 H 0.06 0.93 7.47 -2.39 -0.02 0.92 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.87 7.48 -2.39 -0.02 0.85 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.96 6.99 -2.38 -0.02 0.94 16 39 H 0.07 1.37 6.63 -2.39 -0.02 1.36 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.34 7.88 8.99 -89.69 -0.81 7.07 16 42 H 0.34 11.38 7.85 -89.70 -0.70 10.67 16 Total: -1.00 -68.75 327.75 0.55 -68.20 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.51 Total: 21.18 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 2.97 Total: -18.73 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -1.23 Total: -81.01 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -2.71 Total: -36.82 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.75 0.55 -68.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385231331.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.986 kcal (2) G-P(sol) polarization free energy of solvation -68.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds