Wall clock time and date at job start Mon Mar 30 2020 04:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99456 * 2 1 4 4 H 1.48500 * 109.47144 * 269.99657 * 3 2 1 5 5 H 1.48501 * 109.47330 * 30.00097 * 3 2 1 6 6 H 1.48503 * 109.47082 * 149.99572 * 3 2 1 7 7 C 1.37873 * 120.00723 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00677 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99507 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.46930 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00129 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47383 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47097 * 64.99937 * 12 11 10 14 14 C 1.42896 * 114.00187 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.46984 * 29.99730 * 14 13 12 16 16 C 1.53002 * 109.47217 * 269.99788 * 14 13 12 17 17 C 1.52996 * 109.46891 * 300.00085 * 16 14 13 18 18 C 1.53000 * 109.47328 * 299.99597 * 17 16 14 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 16 20 20 C 1.52997 * 109.47412 * 149.99728 * 14 13 12 21 21 H 1.09001 * 109.47375 * 180.02562 * 20 14 13 22 22 C 1.52997 * 109.47232 * 299.99981 * 20 14 13 23 23 N 1.46898 * 109.47386 * 184.99670 * 22 20 14 24 24 H 0.96994 * 120.00665 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46953 * 60.00385 * 9 7 2 26 26 H 1.08995 * 109.47407 * 299.99893 * 9 7 2 27 27 H 1.09000 * 109.47567 * 59.99341 * 11 10 9 28 28 H 1.09000 * 109.46982 * 300.00049 * 11 10 9 29 29 H 1.09000 * 109.47045 * 304.99886 * 12 11 10 30 30 H 1.08997 * 109.47390 * 184.99655 * 12 11 10 31 31 H 1.08992 * 109.47056 * 179.97438 * 16 14 13 32 32 H 1.09004 * 109.47006 * 59.99855 * 16 14 13 33 33 H 1.09004 * 109.47368 * 179.97438 * 17 16 14 34 34 H 1.09001 * 109.47372 * 59.99964 * 17 16 14 35 35 H 1.09002 * 109.47398 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47194 * 300.00476 * 18 17 16 37 37 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 38 38 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.47346 * 305.00019 * 22 20 14 40 40 H 1.09002 * 109.47196 * 64.99793 * 22 20 14 41 41 H 1.00898 * 110.99890 * 56.04583 * 23 22 20 42 42 H 1.00900 * 111.00171 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1799 -3.5852 0.0005 11 6 1.5655 -4.8753 0.0000 12 6 2.6485 -5.9560 -0.0006 13 8 3.3880 -5.8900 1.2204 14 6 4.4304 -6.8622 1.3219 15 1 4.8092 -7.0940 0.3265 16 6 3.8794 -8.1353 1.9673 17 6 3.3477 -7.8098 3.3645 18 6 4.4832 -7.2521 4.2251 19 6 5.0342 -5.9790 3.5798 20 6 5.5658 -6.3045 2.1825 21 1 6.3612 -7.0458 2.2595 22 6 6.1169 -5.0314 1.5372 23 7 7.2832 -4.5624 2.2973 24 1 -0.4851 0.8399 -0.0004 25 1 0.6250 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8902 27 1 0.9456 -4.9822 -0.8902 28 1 0.9451 -4.9827 0.8897 29 1 3.3220 -5.7950 -0.8424 30 1 2.1826 -6.9373 -0.0906 31 1 4.6744 -8.8769 2.0443 32 1 3.0705 -8.5326 1.3541 33 1 2.9548 -8.7167 3.8241 34 1 2.5526 -7.0683 3.2870 35 1 4.1045 -7.0206 5.2207 36 1 5.2783 -7.9936 4.3025 37 1 4.2391 -5.2375 3.5023 38 1 5.8434 -5.5819 4.1926 39 1 6.4140 -5.2439 0.5102 40 1 5.3469 -4.2598 1.5404 41 1 7.9854 -5.2839 2.3638 42 1 7.6654 -3.7217 1.8909 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385261687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:03 Heat of formation + Delta-G solvation = -122.094580 kcal Electronic energy + Delta-G solvation = -20123.249952 eV Core-core repulsion = 17102.166516 eV Total energy + Delta-G solvation = -3021.083436 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.54249 -36.97134 -35.67461 -34.45600 -32.68805 -30.41805 -30.20895 -28.85725 -26.73197 -24.44509 -22.47173 -22.32731 -21.94044 -20.88317 -19.54420 -16.51261 -16.27060 -16.12724 -15.89877 -15.16427 -14.88826 -14.50157 -14.35847 -14.15253 -14.08189 -13.58016 -13.33082 -12.95504 -12.53195 -12.11040 -11.94549 -11.72415 -11.70446 -11.43306 -11.20335 -10.82144 -10.80431 -10.74954 -10.56407 -10.34042 -10.21586 -9.94963 -9.91438 -9.18965 -9.04469 -8.78680 -8.57658 -8.12578 -6.07045 -4.08219 3.32963 3.37854 3.43904 3.90378 4.38173 4.49598 4.75990 4.84952 4.91050 4.95388 5.16998 5.29484 5.29896 5.38110 5.44019 5.50925 5.54732 5.59727 5.64947 5.68088 5.79961 5.89547 6.00241 6.06674 6.09043 6.18104 6.24518 6.30252 6.33665 6.41930 6.51527 6.72947 7.14026 7.19137 7.47275 7.49242 7.54973 7.83736 8.19738 8.62877 9.05283 9.56412 11.04649 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.004929 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.355103 B = 5679.619391 C = 6368.022859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.511 4.511 8 H 0.066 0.934 9 C 0.195 3.805 10 O -0.388 6.388 11 C 0.065 3.935 12 C 0.068 3.932 13 O -0.356 6.356 14 C 0.092 3.908 15 H 0.053 0.947 16 C -0.138 4.138 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.103 4.103 20 C -0.074 4.074 21 H 0.069 0.931 22 C 0.064 3.936 23 N -0.848 5.848 24 H 0.263 0.737 25 H 0.003 0.997 26 H 0.005 0.995 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.019 0.981 40 H 0.092 0.908 41 H 0.331 0.669 42 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.035 -16.794 3.704 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.549 4.549 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.307 6.307 11 C -0.013 4.013 12 C -0.009 4.009 13 O -0.275 6.275 14 C 0.033 3.967 15 H 0.071 0.929 16 C -0.176 4.176 17 C -0.152 4.152 18 C -0.156 4.156 19 C -0.141 4.141 20 C -0.093 4.093 21 H 0.088 0.912 22 C -0.066 4.066 23 N -0.377 5.377 24 H 0.073 0.927 25 H 0.021 0.979 26 H 0.023 0.977 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.038 0.962 40 H 0.111 0.889 41 H 0.142 0.858 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.518 -16.411 4.458 19.488 hybrid contribution 0.533 0.404 -1.242 1.411 sum 10.052 -16.007 3.216 19.173 Atomic orbital electron populations 1.69962 1.06096 1.27089 1.50772 1.24939 0.94959 0.99388 0.95217 0.86351 0.79750 0.82337 0.78155 1.20535 1.21079 1.19584 1.21047 0.94031 0.89349 1.50517 0.91600 1.20195 0.88802 0.83705 0.95267 1.87905 1.35097 1.12597 1.95141 1.22234 0.93743 0.85690 0.99633 1.22581 0.94140 0.96942 0.87253 1.88086 1.46863 1.54804 1.37753 1.22033 0.88502 0.88645 0.97540 0.92879 1.22001 1.00698 0.97326 0.97576 1.21425 0.98760 1.00582 0.94471 1.21543 0.97699 0.97681 0.98630 1.21402 1.01057 0.97237 0.94356 1.21187 0.95424 0.96579 0.96144 0.91234 1.21846 0.93656 0.97996 0.93121 1.58694 1.11042 1.09445 1.58535 0.92708 0.97910 0.97676 0.93292 0.93749 0.93094 0.93157 0.91690 0.92087 0.92821 0.90911 0.92291 0.92883 0.90776 0.91291 0.96248 0.88947 0.85751 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -15.39 9.43 -34.44 -0.32 -15.71 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.48 5.69 36.01 0.20 5.69 16 10 O -0.39 -9.67 10.29 -40.08 -0.41 -10.08 16 11 C 0.06 1.24 6.32 37.16 0.23 1.47 16 12 C 0.07 1.05 6.13 37.16 0.23 1.28 16 13 O -0.36 -5.78 8.02 -40.08 -0.32 -6.10 16 14 C 0.09 1.16 2.35 -26.73 -0.06 1.09 16 15 H 0.05 0.63 7.79 -51.93 -0.40 0.22 16 16 C -0.14 -1.49 5.63 -26.73 -0.15 -1.64 16 17 C -0.11 -1.30 5.78 -26.73 -0.15 -1.46 16 18 C -0.12 -1.32 5.92 -26.73 -0.16 -1.47 16 19 C -0.10 -1.34 4.95 -26.73 -0.13 -1.48 16 20 C -0.07 -0.91 2.16 -90.62 -0.20 -1.10 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 22 C 0.06 0.87 5.96 -3.83 -0.02 0.85 16 23 N -0.85 -9.87 9.08 -10.37 -0.09 -9.96 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.05 0.63 7.87 -51.93 -0.41 0.22 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.19 7.68 -51.93 -0.40 0.79 16 38 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 39 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.09 1.61 7.84 -51.93 -0.41 1.20 16 41 H 0.33 3.11 8.99 -39.29 -0.35 2.76 16 42 H 0.34 3.71 9.08 -39.29 -0.36 3.35 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -31.95 335.49 -8.42 -40.37 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.73 Total: 1.08 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -0.63 Total: -10.94 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.64 Total: -36.58 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.73 Total: -16.18 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.95 -8.42 -40.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385261687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.722 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds