Wall clock time and date at job start Mon Mar 30 2020 04:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99456 * 2 1 4 4 H 1.48500 * 109.47144 * 269.99657 * 3 2 1 5 5 H 1.48501 * 109.47330 * 30.00097 * 3 2 1 6 6 H 1.48503 * 109.47082 * 149.99572 * 3 2 1 7 7 C 1.37873 * 120.00723 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00677 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99507 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.46930 * 179.97438 * 9 7 2 11 11 C 1.42895 * 114.00129 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47383 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47097 * 64.99937 * 12 11 10 14 14 C 1.42896 * 114.00187 * 180.02562 * 13 12 11 15 15 H 1.09002 * 109.46984 * 29.99730 * 14 13 12 16 16 C 1.53002 * 109.47217 * 269.99788 * 14 13 12 17 17 C 1.52996 * 109.46891 * 300.00085 * 16 14 13 18 18 C 1.53000 * 109.47328 * 299.99597 * 17 16 14 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 16 20 20 C 1.52997 * 109.47412 * 149.99728 * 14 13 12 21 21 H 1.09001 * 109.47375 * 180.02562 * 20 14 13 22 22 C 1.52997 * 109.47232 * 299.99981 * 20 14 13 23 23 N 1.46898 * 109.47386 * 184.99670 * 22 20 14 24 24 H 0.96994 * 120.00665 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46953 * 60.00385 * 9 7 2 26 26 H 1.08995 * 109.47407 * 299.99893 * 9 7 2 27 27 H 1.09000 * 109.47567 * 59.99341 * 11 10 9 28 28 H 1.09000 * 109.46982 * 300.00049 * 11 10 9 29 29 H 1.09000 * 109.47045 * 304.99886 * 12 11 10 30 30 H 1.08997 * 109.47390 * 184.99655 * 12 11 10 31 31 H 1.08992 * 109.47056 * 179.97438 * 16 14 13 32 32 H 1.09004 * 109.47006 * 59.99855 * 16 14 13 33 33 H 1.09004 * 109.47368 * 179.97438 * 17 16 14 34 34 H 1.09001 * 109.47372 * 59.99964 * 17 16 14 35 35 H 1.09002 * 109.47398 * 180.02562 * 18 17 16 36 36 H 1.09001 * 109.47194 * 300.00476 * 18 17 16 37 37 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 38 38 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.47346 * 305.00019 * 22 20 14 40 40 H 1.09002 * 109.47196 * 64.99793 * 22 20 14 41 41 H 1.00898 * 110.99890 * 56.04583 * 23 22 20 42 42 H 1.00900 * 111.00171 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0047 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 8 2.1799 -3.5852 0.0005 11 6 1.5655 -4.8753 0.0000 12 6 2.6485 -5.9560 -0.0006 13 8 3.3880 -5.8900 1.2204 14 6 4.4304 -6.8622 1.3219 15 1 4.8092 -7.0940 0.3265 16 6 3.8794 -8.1353 1.9673 17 6 3.3477 -7.8098 3.3645 18 6 4.4832 -7.2521 4.2251 19 6 5.0342 -5.9790 3.5798 20 6 5.5658 -6.3045 2.1825 21 1 6.3612 -7.0458 2.2595 22 6 6.1169 -5.0314 1.5372 23 7 7.2832 -4.5624 2.2973 24 1 -0.4851 0.8399 -0.0004 25 1 0.6250 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8902 27 1 0.9456 -4.9822 -0.8902 28 1 0.9451 -4.9827 0.8897 29 1 3.3220 -5.7950 -0.8424 30 1 2.1826 -6.9373 -0.0906 31 1 4.6744 -8.8769 2.0443 32 1 3.0705 -8.5326 1.3541 33 1 2.9548 -8.7167 3.8241 34 1 2.5526 -7.0683 3.2870 35 1 4.1045 -7.0206 5.2207 36 1 5.2783 -7.9936 4.3025 37 1 4.2391 -5.2375 3.5023 38 1 5.8434 -5.5819 4.1926 39 1 6.4140 -5.2439 0.5102 40 1 5.3469 -4.2598 1.5404 41 1 7.9854 -5.2839 2.3638 42 1 7.6654 -3.7217 1.8909 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385261687.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:02 Heat of formation + Delta-G solvation = -144.511992 kcal Electronic energy + Delta-G solvation = -20124.222044 eV Core-core repulsion = 17102.166516 eV Total energy + Delta-G solvation = -3022.055528 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.58206 -38.68499 -37.03289 -35.43526 -34.92261 -31.68149 -31.15523 -30.25935 -28.79002 -25.46047 -24.56444 -23.53647 -23.26980 -21.88229 -20.55064 -18.67883 -17.70518 -17.34822 -17.24547 -16.69762 -16.15882 -16.03850 -15.94610 -15.27633 -15.24770 -14.98141 -14.60386 -14.24762 -13.91607 -13.50695 -13.29615 -13.06774 -12.87605 -12.85937 -12.67860 -12.63525 -12.46494 -12.22145 -11.81705 -11.76062 -11.36589 -11.30168 -11.23278 -10.90629 -10.85033 -10.25255 -10.23725 -9.55102 -8.33572 -6.45977 1.37914 1.41327 1.53477 2.33618 2.79476 2.99977 3.18583 3.54834 3.81025 3.90350 4.00902 4.16738 4.24317 4.25637 4.36414 4.48821 4.51154 4.53148 4.59593 4.60127 4.64936 4.75240 4.76377 4.87877 4.90795 5.02431 5.11592 5.13664 5.16348 5.33154 5.36866 5.44339 5.51858 5.52919 5.67775 5.94424 6.23668 6.43251 6.54051 6.66378 6.80902 7.25923 8.78970 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.021429 B = 0.004929 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.355103 B = 5679.619391 C = 6368.022859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.209 3.791 10 O -0.404 6.404 11 C 0.053 3.947 12 C 0.075 3.925 13 O -0.387 6.387 14 C 0.084 3.916 15 H 0.067 0.933 16 C -0.133 4.133 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.098 4.098 20 C -0.071 4.071 21 H 0.099 0.901 22 C 0.071 3.929 23 N -0.852 5.852 24 H 0.271 0.729 25 H -0.011 1.011 26 H -0.019 1.019 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.043 0.957 41 H 0.348 0.652 42 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.647 -18.079 3.615 21.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.134 3.866 10 O -0.324 6.324 11 C -0.024 4.024 12 C -0.001 4.001 13 O -0.307 6.307 14 C 0.026 3.974 15 H 0.085 0.915 16 C -0.170 4.170 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.136 4.136 20 C -0.089 4.089 21 H 0.117 0.883 22 C -0.060 4.060 23 N -0.382 5.382 24 H 0.080 0.920 25 H 0.007 0.993 26 H -0.001 1.001 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.062 0.938 41 H 0.161 0.839 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 11.136 -17.730 4.367 21.388 hybrid contribution 0.013 0.741 -1.184 1.397 sum 11.150 -16.988 3.183 20.568 Atomic orbital electron populations 1.70064 1.07736 1.28685 1.50483 1.25958 0.95979 1.03357 0.93836 0.85192 0.78318 0.76993 0.78967 1.18962 1.19732 1.19116 1.21353 0.93938 0.90914 1.52316 0.92356 1.19818 0.88628 0.84812 0.93329 1.87864 1.35207 1.14184 1.95171 1.22621 0.95584 0.84088 1.00115 1.22528 0.93387 0.96933 0.87289 1.88070 1.48059 1.56647 1.37877 1.22300 0.87782 0.88752 0.98575 0.91548 1.21990 1.01679 0.96632 0.96737 1.21417 0.97996 1.00468 0.95404 1.21522 0.98290 0.97032 0.98275 1.21308 0.99587 0.97324 0.95384 1.21215 0.96063 0.96463 0.95178 0.88254 1.21652 0.93120 0.97284 0.93993 1.58619 1.11142 1.10253 1.58218 0.91983 0.99334 1.00096 0.91681 0.94314 0.92847 0.89333 0.89048 0.91403 0.90928 0.93991 0.92407 0.90465 0.95090 0.91541 0.95723 0.93841 0.83869 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 2 C 0.01 0.42 5.46 84.65 0.46 0.89 16 3 Si 0.98 45.68 29.54 68.60 2.03 47.70 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -34.03 9.43 25.60 0.24 -33.79 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 12.35 5.69 71.24 0.41 12.76 16 10 O -0.40 -21.06 10.29 -144.34 -1.49 -22.55 16 11 C 0.05 2.07 6.32 71.98 0.45 2.53 16 12 C 0.08 2.28 6.13 71.98 0.44 2.72 16 13 O -0.39 -12.66 8.02 -144.34 -1.16 -13.81 16 14 C 0.08 1.98 2.35 30.59 0.07 2.05 16 15 H 0.07 1.40 7.79 -2.39 -0.02 1.38 16 16 C -0.13 -2.47 5.63 30.59 0.17 -2.30 16 17 C -0.12 -2.43 5.78 30.59 0.18 -2.25 16 18 C -0.11 -2.35 5.92 30.59 0.18 -2.17 16 19 C -0.10 -2.56 4.95 30.60 0.15 -2.41 16 20 C -0.07 -1.63 2.16 -10.79 -0.02 -1.65 16 21 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 22 C 0.07 1.92 5.96 86.30 0.51 2.43 16 23 N -0.85 -19.29 9.08 -186.72 -1.69 -20.99 16 24 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 25 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 26 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 27 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 30 H 0.09 2.02 7.87 -2.39 -0.02 2.00 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.19 7.87 -2.38 -0.02 1.17 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 1.14 7.68 -2.39 -0.02 1.12 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.03 1.05 7.68 -2.39 -0.02 1.04 16 38 H 0.07 1.72 7.75 -2.39 -0.02 1.70 16 39 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.04 1.61 7.84 -2.39 -0.02 1.59 16 41 H 0.35 5.89 8.99 -89.70 -0.81 5.08 16 42 H 0.35 7.39 9.08 -89.69 -0.81 6.58 16 Total: -1.00 -71.53 335.49 0.58 -70.94 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.64 Total: 16.96 kcal Atomic # 6 Polarization: -24.45 SS G_CDS: 3.25 Total: -21.20 kcal Atomic # 7 Polarization: -76.63 SS G_CDS: -1.41 Total: -78.04 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -2.64 Total: -36.36 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.53 0.58 -70.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385261687.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.571 kcal (2) G-P(sol) polarization free energy of solvation -71.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds