Wall clock time and date at job start Mon Mar 30 2020 04:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99599 * 2 1 4 4 H 1.48507 * 109.47079 * 269.99657 * 3 2 1 5 5 H 1.48498 * 109.47175 * 29.99729 * 3 2 1 6 6 H 1.48492 * 109.47399 * 149.99899 * 3 2 1 7 7 C 1.37878 * 120.00566 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46943 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.46800 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99940 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47366 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47128 * 180.02562 * 13 12 11 15 15 O 1.42899 * 109.46889 * 179.97438 * 14 13 12 16 16 C 1.42905 * 113.99778 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46728 * 179.97438 * 16 15 14 18 18 H 1.09007 * 109.87243 * 53.99740 * 17 16 15 19 19 C 1.54100 * 109.87645 * 175.00264 * 17 16 15 20 20 C 1.54806 * 104.18981 * 121.45668 * 19 17 16 21 21 C 1.54993 * 102.09292 * 20.87837 * 20 19 17 22 22 O 1.43740 * 109.88305 * 292.83317 * 17 16 15 23 23 H 0.96993 * 120.00378 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47138 * 59.99450 * 9 7 2 25 25 H 1.08999 * 109.47139 * 299.99853 * 9 7 2 26 26 H 1.08996 * 109.46971 * 59.99816 * 10 9 7 27 27 H 1.08999 * 109.47263 * 299.99997 * 10 9 7 28 28 H 1.00908 * 111.00351 * 56.05120 * 11 10 9 29 29 H 1.09005 * 109.46746 * 60.00338 * 12 11 10 30 30 H 1.08999 * 109.47499 * 300.00255 * 12 11 10 31 31 H 1.08997 * 109.47213 * 60.00068 * 13 12 11 32 32 H 1.09008 * 109.46725 * 300.00184 * 13 12 11 33 33 H 1.08997 * 109.47286 * 59.99785 * 14 13 12 34 34 H 1.08997 * 109.46848 * 299.99883 * 14 13 12 35 35 H 1.09000 * 109.47187 * 300.00233 * 16 15 14 36 36 H 1.09001 * 109.46558 * 60.00281 * 16 15 14 37 37 H 1.09002 * 110.49208 * 240.13435 * 19 17 16 38 38 H 1.09003 * 110.49045 * 2.77798 * 19 17 16 39 39 H 1.09001 * 110.90996 * 139.08028 * 20 19 17 40 40 H 1.09008 * 110.90777 * 262.68074 * 20 19 17 41 41 H 1.08997 * 110.61713 * 81.47900 * 21 20 19 42 42 H 1.09000 * 110.61923 * 204.32134 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2456 -3.6620 0.0005 11 7 1.5111 -4.9342 0.0012 12 6 2.4357 -6.0758 0.0006 13 6 1.6357 -7.3800 0.0006 14 6 2.5987 -8.5689 0.0006 15 8 1.8515 -9.7870 0.0012 16 6 2.6604 -10.9651 0.0007 17 6 1.7599 -12.2020 0.0021 18 1 1.0537 -12.1471 -0.8265 19 6 2.6185 -13.4753 -0.1247 20 6 2.2736 -14.2934 1.1435 21 6 0.9063 -13.6914 1.5563 22 8 1.0495 -12.2881 1.2487 23 1 -0.4850 0.8399 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5568 0.8903 26 1 2.8722 -3.6041 0.8905 27 1 2.8722 -3.6042 -0.8894 28 1 0.8744 -4.9846 -0.7801 29 1 3.0643 -6.0346 0.8902 30 1 3.0631 -6.0348 -0.8898 31 1 1.0074 -7.4209 -0.8891 32 1 1.0080 -7.4212 0.8909 33 1 3.2267 -8.5279 0.8905 34 1 3.2266 -8.5279 -0.8894 35 1 3.2891 -10.9738 -0.8897 36 1 3.2903 -10.9736 0.8903 37 1 2.3472 -14.0307 -1.0225 38 1 3.6784 -13.2211 -0.1381 39 1 2.1769 -15.3533 0.9083 40 1 3.0192 -14.1358 1.9229 41 1 0.1001 -14.1325 0.9702 42 1 0.7287 -13.8371 2.6218 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393830514.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:37 Heat of formation + Delta-G solvation = -114.454327 kcal Electronic energy + Delta-G solvation = -18281.316481 eV Core-core repulsion = 15260.564351 eV Total energy + Delta-G solvation = -3020.752130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.88241 -37.96472 -36.21110 -33.40133 -32.59666 -31.99837 -30.65397 -28.68366 -25.81143 -24.71976 -23.04484 -22.45038 -21.56502 -21.09908 -20.29571 -17.27097 -16.67694 -16.34665 -16.24775 -16.05286 -15.67686 -14.92456 -14.47239 -14.42755 -14.05201 -13.66155 -13.49913 -13.09689 -12.45685 -12.35899 -12.16350 -12.04589 -11.79775 -11.58430 -11.34428 -11.17739 -11.08784 -11.03567 -10.89935 -10.74234 -10.49885 -9.98450 -9.94460 -9.72270 -9.35001 -9.11878 -8.32666 -7.78959 -5.96923 -3.99587 3.33797 3.34030 3.39919 3.43481 3.52549 4.10125 4.36621 4.45690 4.48662 4.66609 4.80693 4.91342 4.95190 5.02645 5.08971 5.14640 5.23575 5.27873 5.34894 5.38102 5.38755 5.45547 5.51456 5.57208 5.64385 5.67292 5.86600 6.24481 6.31266 6.37805 6.47451 6.57093 7.00836 7.08827 7.51694 7.76067 7.86157 7.99512 8.11946 8.46452 9.07724 9.63923 11.14528 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.078069 B = 0.002160 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.571571 B =12957.770020 C =13140.192386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.066 3.934 11 N -0.692 5.692 12 C 0.062 3.938 13 C -0.116 4.116 14 C 0.065 3.935 15 O -0.380 6.380 16 C 0.064 3.936 17 C 0.078 3.922 18 H 0.077 0.923 19 C -0.150 4.150 20 C -0.156 4.156 21 C 0.042 3.958 22 O -0.362 6.362 23 H 0.260 0.740 24 H 0.014 0.986 25 H 0.026 0.974 26 H 0.058 0.942 27 H 0.015 0.985 28 H 0.337 0.663 29 H 0.068 0.932 30 H 0.022 0.978 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.105 -29.606 -0.612 30.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.323 5.323 12 C -0.068 4.068 13 C -0.154 4.154 14 C -0.012 4.012 15 O -0.299 6.299 16 C -0.013 4.013 17 C 0.020 3.980 18 H 0.095 0.905 19 C -0.188 4.188 20 C -0.194 4.194 21 C -0.035 4.035 22 O -0.281 6.281 23 H 0.070 0.930 24 H 0.032 0.968 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.033 0.967 28 H 0.154 0.846 29 H 0.086 0.914 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.601 -29.303 0.204 29.834 hybrid contribution 1.198 0.772 -1.095 1.798 sum 6.799 -28.531 -0.891 29.343 Atomic orbital electron populations 1.69972 1.06023 1.26581 1.50637 1.25016 0.94863 0.99237 0.95344 0.86574 0.79817 0.83444 0.78021 1.20730 1.21187 1.19904 1.21181 0.92980 0.91031 1.50859 0.92760 1.19080 0.94051 0.90417 0.97789 1.22163 0.96995 0.88457 0.98615 1.60559 1.19778 1.02069 1.49871 1.21796 0.94668 0.90215 1.00086 1.21481 0.98362 0.91566 1.03959 1.22480 0.94523 0.84279 0.99911 1.87941 1.33471 1.13132 1.95365 1.22673 0.93026 0.84979 1.00600 1.22758 0.93501 0.93420 0.88293 0.90523 1.22944 1.01153 0.95606 0.99126 1.23146 0.98277 1.00215 0.97721 1.23578 0.96271 0.82054 1.01559 1.89023 1.76735 1.23535 1.38772 0.92988 0.96776 0.95571 0.92350 0.96685 0.84586 0.91357 0.95935 0.91369 0.90150 0.93271 0.93611 0.92240 0.92678 0.90100 0.90157 0.90081 0.90372 0.92131 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.13 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.44 5.62 -3.83 -0.02 1.42 16 11 N -0.69 -12.99 6.50 -113.78 -0.74 -13.73 16 12 C 0.06 0.94 5.68 -3.82 -0.02 0.92 16 13 C -0.12 -1.56 5.84 -26.73 -0.16 -1.72 16 14 C 0.07 0.76 5.94 37.16 0.22 0.98 16 15 O -0.38 -4.93 10.34 -36.86 -0.38 -5.31 16 16 C 0.06 0.62 5.39 37.16 0.20 0.82 16 17 C 0.08 0.71 3.71 -26.16 -0.10 0.61 16 18 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 19 C -0.15 -0.87 6.64 -25.20 -0.17 -1.04 16 20 C -0.16 -0.84 7.15 -24.73 -0.18 -1.02 16 21 C 0.04 0.30 7.72 38.21 0.29 0.60 16 22 O -0.36 -4.09 11.18 -36.86 -0.41 -4.50 16 23 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.34 6.08 8.73 -39.29 -0.34 5.74 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.39 7.70 -51.93 -0.40 0.00 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -32.69 344.70 -9.00 -41.69 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.89 Total: -1.85 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.48 Total: -11.81 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.00 Total: -40.38 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.79 Total: -9.81 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.69 -9.00 -41.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393830514.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.763 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds