Wall clock time and date at job start Mon Mar 30 2020 04:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99599 * 2 1 4 4 H 1.48507 * 109.47079 * 269.99657 * 3 2 1 5 5 H 1.48498 * 109.47175 * 29.99729 * 3 2 1 6 6 H 1.48492 * 109.47399 * 149.99899 * 3 2 1 7 7 C 1.37878 * 120.00566 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99841 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99811 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46943 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.46800 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99940 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47366 * 180.02562 * 12 11 10 14 14 C 1.52999 * 109.47128 * 180.02562 * 13 12 11 15 15 O 1.42899 * 109.46889 * 179.97438 * 14 13 12 16 16 C 1.42905 * 113.99778 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46728 * 179.97438 * 16 15 14 18 18 H 1.09007 * 109.87243 * 53.99740 * 17 16 15 19 19 C 1.54100 * 109.87645 * 175.00264 * 17 16 15 20 20 C 1.54806 * 104.18981 * 121.45668 * 19 17 16 21 21 C 1.54993 * 102.09292 * 20.87837 * 20 19 17 22 22 O 1.43740 * 109.88305 * 292.83317 * 17 16 15 23 23 H 0.96993 * 120.00378 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47138 * 59.99450 * 9 7 2 25 25 H 1.08999 * 109.47139 * 299.99853 * 9 7 2 26 26 H 1.08996 * 109.46971 * 59.99816 * 10 9 7 27 27 H 1.08999 * 109.47263 * 299.99997 * 10 9 7 28 28 H 1.00908 * 111.00351 * 56.05120 * 11 10 9 29 29 H 1.09005 * 109.46746 * 60.00338 * 12 11 10 30 30 H 1.08999 * 109.47499 * 300.00255 * 12 11 10 31 31 H 1.08997 * 109.47213 * 60.00068 * 13 12 11 32 32 H 1.09008 * 109.46725 * 300.00184 * 13 12 11 33 33 H 1.08997 * 109.47286 * 59.99785 * 14 13 12 34 34 H 1.08997 * 109.46848 * 299.99883 * 14 13 12 35 35 H 1.09000 * 109.47187 * 300.00233 * 16 15 14 36 36 H 1.09001 * 109.46558 * 60.00281 * 16 15 14 37 37 H 1.09002 * 110.49208 * 240.13435 * 19 17 16 38 38 H 1.09003 * 110.49045 * 2.77798 * 19 17 16 39 39 H 1.09001 * 110.90996 * 139.08028 * 20 19 17 40 40 H 1.09008 * 110.90777 * 262.68074 * 20 19 17 41 41 H 1.08997 * 110.61713 * 81.47900 * 21 20 19 42 42 H 1.09000 * 110.61923 * 204.32134 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2456 -3.6620 0.0005 11 7 1.5111 -4.9342 0.0012 12 6 2.4357 -6.0758 0.0006 13 6 1.6357 -7.3800 0.0006 14 6 2.5987 -8.5689 0.0006 15 8 1.8515 -9.7870 0.0012 16 6 2.6604 -10.9651 0.0007 17 6 1.7599 -12.2020 0.0021 18 1 1.0537 -12.1471 -0.8265 19 6 2.6185 -13.4753 -0.1247 20 6 2.2736 -14.2934 1.1435 21 6 0.9063 -13.6914 1.5563 22 8 1.0495 -12.2881 1.2487 23 1 -0.4850 0.8399 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5568 0.8903 26 1 2.8722 -3.6041 0.8905 27 1 2.8722 -3.6042 -0.8894 28 1 0.8744 -4.9846 -0.7801 29 1 3.0643 -6.0346 0.8902 30 1 3.0631 -6.0348 -0.8898 31 1 1.0074 -7.4209 -0.8891 32 1 1.0080 -7.4212 0.8909 33 1 3.2267 -8.5279 0.8905 34 1 3.2266 -8.5279 -0.8894 35 1 3.2891 -10.9738 -0.8897 36 1 3.2903 -10.9736 0.8903 37 1 2.3472 -14.0307 -1.0225 38 1 3.6784 -13.2211 -0.1381 39 1 2.1769 -15.3533 0.9083 40 1 3.0192 -14.1358 1.9229 41 1 0.1001 -14.1325 0.9702 42 1 0.7287 -13.8371 2.6218 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393830514.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:37 Heat of formation + Delta-G solvation = -137.300342 kcal Electronic energy + Delta-G solvation = -18282.307159 eV Core-core repulsion = 15260.564351 eV Total energy + Delta-G solvation = -3021.742807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51863 -38.88910 -37.67547 -35.31240 -33.58672 -33.08744 -31.57874 -30.32126 -26.93860 -26.00396 -24.52509 -23.02573 -22.68384 -22.20548 -21.69842 -18.52712 -18.00593 -17.46959 -17.10425 -16.91123 -16.63008 -16.49993 -15.96579 -15.59516 -14.85780 -14.77608 -14.69233 -14.52494 -14.08462 -13.47397 -13.18672 -13.08486 -12.88057 -12.70501 -12.62625 -12.42839 -12.24364 -12.12718 -12.05390 -11.98450 -11.73344 -11.56321 -11.40753 -11.23305 -10.65841 -10.58334 -10.56842 -9.30885 -8.20383 -6.32394 1.40474 1.42606 1.53820 2.40023 2.53494 2.93499 3.12747 3.42447 3.62161 3.87099 3.95976 3.99275 4.13066 4.19868 4.24033 4.33907 4.42094 4.45846 4.48317 4.49466 4.61745 4.63229 4.65742 4.72169 4.80292 4.90479 4.95787 5.05262 5.06187 5.15789 5.18517 5.22367 5.44362 5.66097 5.77976 5.96270 6.12553 6.24247 6.29881 6.52081 6.84944 7.36890 8.91901 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.078069 B = 0.002160 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.571571 B =12957.770020 C =13140.192386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.003 4.003 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.029 3.971 10 C 0.084 3.916 11 N -0.703 5.703 12 C 0.066 3.934 13 C -0.108 4.108 14 C 0.069 3.931 15 O -0.408 6.408 16 C 0.059 3.941 17 C 0.070 3.930 18 H 0.068 0.932 19 C -0.144 4.144 20 C -0.150 4.150 21 C 0.032 3.968 22 O -0.401 6.401 23 H 0.264 0.736 24 H -0.008 1.008 25 H -0.007 1.007 26 H 0.059 0.941 27 H 0.022 0.978 28 H 0.340 0.660 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.148 -30.516 -1.118 31.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.045 4.045 11 N -0.335 5.335 12 C -0.063 4.063 13 C -0.146 4.146 14 C -0.008 4.008 15 O -0.328 6.328 16 C -0.018 4.018 17 C 0.013 3.987 18 H 0.086 0.914 19 C -0.182 4.182 20 C -0.188 4.188 21 C -0.044 4.044 22 O -0.321 6.321 23 H 0.073 0.927 24 H 0.010 0.990 25 H 0.012 0.988 26 H 0.077 0.923 27 H 0.041 0.959 28 H 0.157 0.843 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.656 -30.247 -0.303 31.202 hybrid contribution 0.495 0.982 -0.925 1.437 sum 8.151 -29.265 -1.229 30.404 Atomic orbital electron populations 1.70114 1.07892 1.27853 1.51368 1.26035 0.95825 1.03566 0.94614 0.85368 0.78580 0.78063 0.78529 1.19636 1.20735 1.18651 1.21619 0.93606 0.92175 1.50977 0.91959 1.18948 0.94387 0.92440 0.95063 1.21789 0.95596 0.88175 0.98948 1.60465 1.20585 1.02049 1.50354 1.21821 0.94290 0.89212 1.00969 1.21351 0.98400 0.91824 1.03013 1.22419 0.93882 0.83333 1.01155 1.87901 1.35070 1.14244 1.95593 1.22909 0.93155 0.83980 1.01713 1.22916 0.93773 0.94719 0.87327 0.91390 1.22952 1.01180 0.94087 0.99966 1.23145 0.96922 1.01215 0.97491 1.23799 0.97802 0.80648 1.02153 1.88977 1.77360 1.25969 1.39767 0.92720 0.99004 0.98849 0.92257 0.95932 0.84283 0.90927 0.94371 0.91529 0.91928 0.92577 0.91725 0.89918 0.92562 0.88542 0.88978 0.87964 0.90332 0.91481 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.60 5.23 29.85 0.16 1.76 16 10 C 0.08 3.64 5.62 86.30 0.49 4.13 16 11 N -0.70 -26.26 6.50 -513.89 -3.34 -29.61 16 12 C 0.07 1.90 5.68 86.30 0.49 2.40 16 13 C -0.11 -2.83 5.84 30.59 0.18 -2.65 16 14 C 0.07 1.52 5.94 71.98 0.43 1.94 16 15 O -0.41 -10.32 10.34 -147.43 -1.52 -11.84 16 16 C 0.06 1.06 5.39 71.98 0.39 1.45 16 17 C 0.07 1.21 3.71 30.97 0.11 1.33 16 18 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 19 C -0.14 -1.37 6.64 31.58 0.21 -1.16 16 20 C -0.15 -1.33 7.15 31.89 0.23 -1.10 16 21 C 0.03 0.44 7.72 72.66 0.56 1.00 16 22 O -0.40 -9.06 11.18 -147.43 -1.65 -10.71 16 23 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 25 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 26 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 27 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.34 12.32 8.73 -89.69 -0.78 11.53 16 29 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.09 0.66 7.70 -2.39 -0.02 0.64 16 39 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -70.88 344.70 -0.09 -70.97 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.18 Total: 14.26 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 3.94 Total: -22.17 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -3.06 Total: -87.39 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -3.17 Total: -22.56 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -70.88 -0.09 -70.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393830514.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.331 kcal (2) G-P(sol) polarization free energy of solvation -70.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds