Wall clock time and date at job start Mon Mar 30 2020 05:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47196 * 2 1 4 4 H 1.08998 * 110.42343 * 55.85384 * 3 2 1 5 5 C 1.54908 * 110.37600 * 178.17309 * 3 2 1 6 6 H 1.08997 * 110.98728 * 37.80518 * 5 3 2 7 7 C 1.53002 * 110.98788 * 273.98713 * 5 3 2 8 8 O 1.42900 * 109.46565 * 181.27687 * 7 5 3 9 9 C 1.55141 * 101.65180 * 155.89841 * 5 3 2 10 10 C 1.54318 * 103.01859 * 324.34569 * 9 5 3 11 11 N 1.47439 * 107.23533 * 22.28772 * 10 9 5 12 12 C 1.46898 * 111.00378 * 123.25915 * 11 10 9 13 13 C 1.52992 * 109.47281 * 69.87150 * 12 11 10 14 14 O 1.42906 * 109.47448 * 65.00329 * 13 12 11 15 15 C 1.42891 * 114.00283 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47134 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99685 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00216 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00069 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99806 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 90.00621 * 20 18 16 22 22 H 1.48503 * 109.47399 * 210.00111 * 20 18 16 23 23 H 1.48498 * 109.47295 * 330.00717 * 20 18 16 24 24 H 1.09007 * 109.47155 * 299.99795 * 1 2 3 25 25 H 1.09001 * 109.47187 * 60.00346 * 1 2 3 26 26 H 1.09005 * 109.46879 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47519 * 239.99648 * 2 1 3 28 28 H 1.09001 * 109.47187 * 119.99654 * 2 1 3 29 29 H 1.08996 * 109.47360 * 301.27928 * 7 5 3 30 30 H 1.08997 * 109.46897 * 61.28325 * 7 5 3 31 31 H 0.96702 * 113.99666 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.70228 * 205.96220 * 9 5 3 33 33 H 1.09002 * 110.85612 * 82.79795 * 9 5 3 34 34 H 1.09001 * 109.88685 * 262.87944 * 10 9 5 35 35 H 1.08997 * 110.02574 * 141.76735 * 10 9 5 36 36 H 1.09007 * 109.46819 * 309.87348 * 12 11 10 37 37 H 1.09002 * 109.47166 * 189.87281 * 12 11 10 38 38 H 1.09007 * 109.47412 * 305.00117 * 13 12 11 39 39 H 1.08996 * 109.47559 * 185.00163 * 13 12 11 40 40 H 1.08999 * 109.47636 * 59.99922 * 15 14 13 41 41 H 1.09001 * 109.47116 * 299.99852 * 15 14 13 42 42 H 0.97000 * 119.99667 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6262 1.9922 0.8454 5 6 3.5882 1.4672 0.0463 6 1 4.0096 0.6629 -0.5566 7 6 4.0946 1.3918 1.4881 8 8 5.5225 1.4467 1.4948 9 6 3.8983 2.8523 -0.5799 10 6 2.8012 3.0014 -1.6548 11 7 1.6895 2.1123 -1.2706 12 6 0.4345 2.8646 -1.1404 13 6 -0.0342 3.3179 -2.5244 14 8 -0.3600 2.1734 -3.3157 15 6 -0.8109 2.4878 -4.6346 16 6 -1.1249 1.2134 -5.3752 17 1 -0.9929 0.2589 -4.8875 18 6 -1.5798 1.2660 -6.6758 19 7 -1.8533 0.1539 -7.3222 20 14 -1.8075 2.9170 -7.5195 21 1 -0.5480 3.2994 -8.2070 22 1 -2.9043 2.8168 -8.5156 23 1 -2.1510 3.9473 -6.5067 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.6960 2.2312 2.0576 30 1 3.7649 0.4565 1.9405 31 1 5.9136 1.4032 2.3781 32 1 4.8882 2.8559 -1.0364 33 1 3.8167 3.6426 0.1664 34 1 3.1930 2.7059 -2.6280 35 1 2.4539 4.0339 -1.6930 36 1 0.5980 3.7375 -0.5083 37 1 -0.3263 2.2271 -0.6900 38 1 0.7618 3.8815 -3.0112 39 1 -0.9158 3.9504 -2.4204 40 1 -0.0307 3.0338 -5.1649 41 1 -1.7085 3.1033 -4.5746 42 1 -2.1737 0.1910 -8.2371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395225316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:50 Heat of formation + Delta-G solvation = -99.711834 kcal Electronic energy + Delta-G solvation = -20067.346441 eV Core-core repulsion = 17047.233594 eV Total energy + Delta-G solvation = -3020.112847 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.73581 -37.13112 -36.43645 -33.26340 -32.98760 -32.31925 -29.13340 -28.23800 -27.17145 -24.79864 -23.31924 -21.78684 -21.46085 -20.14491 -19.86801 -17.52819 -16.77290 -16.51426 -15.88467 -15.37521 -14.77552 -14.55956 -14.34522 -14.20438 -13.64049 -13.41939 -13.01398 -12.84085 -12.76131 -12.49421 -12.23571 -12.08269 -11.78809 -11.26446 -11.16342 -10.96091 -10.88934 -10.69170 -10.61605 -10.59428 -10.47576 -10.16095 -10.05209 -9.79593 -9.09592 -8.75692 -8.37249 -8.05922 -6.05467 -4.03391 3.28429 3.35053 3.36740 3.80049 4.08043 4.40627 4.52888 4.69936 4.77647 4.85681 5.12994 5.14176 5.22380 5.25982 5.28392 5.35158 5.48727 5.49566 5.58727 5.61947 5.73952 5.80252 5.90974 5.93019 5.96444 6.04802 6.12618 6.19405 6.24254 6.31698 6.48688 6.67941 6.70752 7.07536 7.19254 7.29133 7.36718 7.67427 8.13061 8.76087 9.08119 9.54649 11.07781 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.030629 B = 0.004368 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.938769 B = 6408.312590 C = 6686.513110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.105 4.105 3 C 0.082 3.918 4 H 0.050 0.950 5 C -0.094 4.094 6 H 0.093 0.907 7 C 0.087 3.913 8 O -0.571 6.571 9 C -0.129 4.129 10 C 0.040 3.960 11 N -0.505 5.505 12 C 0.048 3.952 13 C 0.064 3.936 14 O -0.363 6.363 15 C 0.168 3.832 16 C -0.513 4.513 17 H 0.083 0.917 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.875 3.125 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.041 0.959 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.377 0.623 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.038 0.962 40 H -0.004 1.004 41 H -0.001 1.001 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.353 5.875 19.328 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.143 4.143 3 C -0.026 4.026 4 H 0.068 0.932 5 C -0.113 4.113 6 H 0.111 0.889 7 C 0.009 3.991 8 O -0.376 6.376 9 C -0.167 4.167 10 C -0.088 4.088 11 N -0.229 5.229 12 C -0.079 4.079 13 C -0.014 4.014 14 O -0.282 6.282 15 C 0.093 3.907 16 C -0.551 4.551 17 H 0.101 0.899 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.702 3.298 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.192 1.192 24 H 0.060 0.940 25 H 0.100 0.900 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.223 0.777 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.013 0.987 41 H 0.016 0.984 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.100 5.286 18.161 21.442 hybrid contribution -0.047 1.775 0.523 1.852 sum 10.053 7.061 18.684 22.361 Atomic orbital electron populations 1.21913 0.95549 1.01795 1.02319 1.21452 0.96527 0.94647 1.01686 1.22523 0.92729 0.96215 0.91182 0.93190 1.22315 0.94933 0.99030 0.95067 0.88890 1.22126 0.80783 0.99534 0.96632 1.86503 1.20044 1.97357 1.33738 1.22748 0.99705 0.96172 0.98090 1.22892 0.91015 0.95557 0.99293 1.63434 1.01913 1.28797 1.28792 1.22496 0.92744 0.96457 0.96237 1.22316 0.97455 0.90038 0.91604 1.87998 1.85921 1.28319 1.25929 1.20569 0.92330 0.97637 0.80212 1.20901 1.43763 0.93137 0.97286 0.89898 1.24764 0.95025 0.96453 0.96780 1.69881 1.45479 1.26501 1.11742 0.86866 0.78339 0.84789 0.79817 1.20003 1.20876 1.19202 0.93982 0.90039 0.93013 0.90708 0.92624 0.93910 0.93396 0.77686 0.90622 0.91985 0.90202 0.92907 0.94424 0.89199 0.94587 0.94361 0.98673 0.98352 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 8.80 37.16 0.33 -1.80 16 2 C -0.11 -1.32 5.65 -26.73 -0.15 -1.47 16 3 C 0.08 1.01 2.03 -66.18 -0.13 0.87 16 4 H 0.05 0.57 7.70 -51.93 -0.40 0.17 16 5 C -0.09 -1.07 2.74 -88.48 -0.24 -1.31 16 6 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 7 C 0.09 0.79 6.49 37.16 0.24 1.03 16 8 O -0.57 -5.32 13.51 -35.23 -0.48 -5.79 16 9 C -0.13 -1.47 6.27 -24.91 -0.16 -1.62 16 10 C 0.04 0.54 6.14 -2.84 -0.02 0.53 16 11 N -0.51 -7.56 4.60 -223.39 -1.03 -8.59 16 12 C 0.05 0.72 4.46 -3.83 -0.02 0.70 16 13 C 0.06 1.15 6.04 37.15 0.22 1.38 16 14 O -0.36 -8.63 10.27 -35.23 -0.36 -8.99 16 15 C 0.17 4.38 4.76 36.01 0.17 4.55 16 16 C -0.51 -15.57 9.99 -34.44 -0.34 -15.92 16 17 H 0.08 2.76 8.06 -52.49 -0.42 2.33 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.90 -28.15 13.96 55.43 0.77 -27.38 16 20 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 21 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 24 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 1.35 5.97 -51.93 -0.31 1.04 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.58 7.97 -51.93 -0.41 0.16 16 29 H 0.04 0.34 8.11 -51.93 -0.42 -0.08 16 30 H 0.05 0.38 7.97 -51.93 -0.41 -0.03 16 31 H 0.38 1.71 9.12 45.56 0.42 2.12 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.67 6.94 -51.93 -0.36 0.31 16 36 H 0.04 0.47 7.96 -51.92 -0.41 0.06 16 37 H 0.09 1.34 5.26 -51.93 -0.27 1.07 16 38 H 0.04 0.63 7.04 -51.92 -0.37 0.26 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 16 41 H 0.00 -0.03 7.20 -51.93 -0.37 -0.40 16 42 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -33.54 329.53 -7.68 -41.22 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.68 Total: -1.55 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -0.20 Total: -11.04 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.25 Total: -35.97 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.84 Total: -14.79 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.54 -7.68 -41.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395225316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.496 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds