Wall clock time and date at job start Mon Mar 30 2020 05:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47196 * 2 1 4 4 H 1.08998 * 110.42343 * 55.85384 * 3 2 1 5 5 C 1.54908 * 110.37600 * 178.17309 * 3 2 1 6 6 H 1.08997 * 110.98728 * 37.80518 * 5 3 2 7 7 C 1.53002 * 110.98788 * 273.98713 * 5 3 2 8 8 O 1.42900 * 109.46565 * 181.27687 * 7 5 3 9 9 C 1.55141 * 101.65180 * 155.89841 * 5 3 2 10 10 C 1.54318 * 103.01859 * 324.34569 * 9 5 3 11 11 N 1.47439 * 107.23533 * 22.28772 * 10 9 5 12 12 C 1.46898 * 111.00378 * 123.25915 * 11 10 9 13 13 C 1.52992 * 109.47281 * 69.87150 * 12 11 10 14 14 O 1.42906 * 109.47448 * 65.00329 * 13 12 11 15 15 C 1.42891 * 114.00283 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.47134 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99685 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00216 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00069 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99806 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46845 * 90.00621 * 20 18 16 22 22 H 1.48503 * 109.47399 * 210.00111 * 20 18 16 23 23 H 1.48498 * 109.47295 * 330.00717 * 20 18 16 24 24 H 1.09007 * 109.47155 * 299.99795 * 1 2 3 25 25 H 1.09001 * 109.47187 * 60.00346 * 1 2 3 26 26 H 1.09005 * 109.46879 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47519 * 239.99648 * 2 1 3 28 28 H 1.09001 * 109.47187 * 119.99654 * 2 1 3 29 29 H 1.08996 * 109.47360 * 301.27928 * 7 5 3 30 30 H 1.08997 * 109.46897 * 61.28325 * 7 5 3 31 31 H 0.96702 * 113.99666 * 180.02562 * 8 7 5 32 32 H 1.09002 * 110.70228 * 205.96220 * 9 5 3 33 33 H 1.09002 * 110.85612 * 82.79795 * 9 5 3 34 34 H 1.09001 * 109.88685 * 262.87944 * 10 9 5 35 35 H 1.08997 * 110.02574 * 141.76735 * 10 9 5 36 36 H 1.09007 * 109.46819 * 309.87348 * 12 11 10 37 37 H 1.09002 * 109.47166 * 189.87281 * 12 11 10 38 38 H 1.09007 * 109.47412 * 305.00117 * 13 12 11 39 39 H 1.08996 * 109.47559 * 185.00163 * 13 12 11 40 40 H 1.08999 * 109.47636 * 59.99922 * 15 14 13 41 41 H 1.09001 * 109.47116 * 299.99852 * 15 14 13 42 42 H 0.97000 * 119.99667 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6262 1.9922 0.8454 5 6 3.5882 1.4672 0.0463 6 1 4.0096 0.6629 -0.5566 7 6 4.0946 1.3918 1.4881 8 8 5.5225 1.4467 1.4948 9 6 3.8983 2.8523 -0.5799 10 6 2.8012 3.0014 -1.6548 11 7 1.6895 2.1123 -1.2706 12 6 0.4345 2.8646 -1.1404 13 6 -0.0342 3.3179 -2.5244 14 8 -0.3600 2.1734 -3.3157 15 6 -0.8109 2.4878 -4.6346 16 6 -1.1249 1.2134 -5.3752 17 1 -0.9929 0.2589 -4.8875 18 6 -1.5798 1.2660 -6.6758 19 7 -1.8533 0.1539 -7.3222 20 14 -1.8075 2.9170 -7.5195 21 1 -0.5480 3.2994 -8.2070 22 1 -2.9043 2.8168 -8.5156 23 1 -2.1510 3.9473 -6.5067 24 1 -0.3634 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.6960 2.2312 2.0576 30 1 3.7649 0.4565 1.9405 31 1 5.9136 1.4032 2.3781 32 1 4.8882 2.8559 -1.0364 33 1 3.8167 3.6426 0.1664 34 1 3.1930 2.7059 -2.6280 35 1 2.4539 4.0339 -1.6930 36 1 0.5980 3.7375 -0.5083 37 1 -0.3263 2.2271 -0.6900 38 1 0.7618 3.8815 -3.0112 39 1 -0.9158 3.9504 -2.4204 40 1 -0.0307 3.0338 -5.1649 41 1 -1.7085 3.1033 -4.5746 42 1 -2.1737 0.1910 -8.2371 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395225316.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:49 Heat of formation + Delta-G solvation = -126.267112 kcal Electronic energy + Delta-G solvation = -20068.497964 eV Core-core repulsion = 17047.233594 eV Total energy + Delta-G solvation = -3021.264371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.74289 -38.55762 -37.46370 -34.95410 -34.25810 -33.77622 -30.64530 -29.50589 -28.71998 -25.77194 -24.37971 -23.94006 -22.61723 -21.08691 -20.92027 -19.00873 -18.22894 -17.63218 -17.36391 -16.74242 -16.31998 -15.94916 -15.61933 -15.30849 -14.89104 -14.66772 -14.47133 -14.12875 -13.85397 -13.71262 -13.66817 -13.40765 -12.96820 -12.89412 -12.65194 -12.51379 -12.15050 -11.85949 -11.82848 -11.72415 -11.59483 -11.44945 -11.42605 -11.14950 -10.91264 -10.81048 -10.27172 -9.11539 -8.36276 -6.43472 1.32114 1.35545 1.46395 2.29601 2.90560 2.96133 3.13583 3.26525 3.63837 3.87527 4.02990 4.16713 4.21167 4.30285 4.32819 4.38977 4.45515 4.46484 4.54307 4.56371 4.57846 4.64980 4.73934 4.78062 4.85586 4.91771 5.00601 5.04933 5.05290 5.13438 5.20299 5.33711 5.44311 5.46034 5.56802 5.95970 6.17073 6.25367 6.60875 6.83242 6.95021 7.21240 8.81190 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.030629 B = 0.004368 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.938769 B = 6408.312590 C = 6686.513110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C 0.086 3.914 4 H 0.071 0.929 5 C -0.094 4.094 6 H 0.069 0.931 7 C 0.093 3.907 8 O -0.592 6.592 9 C -0.119 4.119 10 C 0.039 3.961 11 N -0.538 5.538 12 C 0.055 3.945 13 C 0.054 3.946 14 O -0.390 6.390 15 C 0.180 3.820 16 C -0.541 4.541 17 H 0.028 0.972 18 C 0.012 3.988 19 N -0.944 5.944 20 Si 0.956 3.044 21 H -0.261 1.261 22 H -0.272 1.272 23 H -0.246 1.246 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.397 0.603 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.004 0.996 41 H 0.010 0.990 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.724 8.556 21.009 25.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.021 4.021 4 H 0.089 0.911 5 C -0.113 4.113 6 H 0.087 0.913 7 C 0.015 3.985 8 O -0.400 6.400 9 C -0.157 4.157 10 C -0.088 4.088 11 N -0.263 5.263 12 C -0.073 4.073 13 C -0.023 4.023 14 O -0.309 6.309 15 C 0.104 3.896 16 C -0.579 4.579 17 H 0.046 0.954 18 C -0.186 4.186 19 N -0.583 5.583 20 Si 0.777 3.223 21 H -0.186 1.186 22 H -0.197 1.197 23 H -0.169 1.169 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.247 0.753 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.490 7.963 19.885 23.851 hybrid contribution -0.127 0.816 0.056 0.828 sum 10.363 8.779 19.941 24.127 Atomic orbital electron populations 1.21848 0.96196 1.01474 1.01622 1.21451 0.95859 0.95320 1.01517 1.22511 0.93434 0.95559 0.90644 0.91066 1.22265 0.94202 0.98155 0.96683 0.91275 1.22054 0.80820 1.00929 0.94733 1.86446 1.20238 1.97435 1.35916 1.22673 0.98575 0.96771 0.97706 1.22838 0.91426 0.95705 0.98852 1.63313 1.02407 1.29713 1.30904 1.22440 0.92624 0.97686 0.94538 1.22691 0.98427 0.88732 0.92421 1.87965 1.86081 1.31581 1.25293 1.20260 0.92892 0.95178 0.81262 1.21156 1.45177 0.93043 0.98494 0.95385 1.25845 0.93885 1.01595 0.97234 1.70041 1.46068 1.29687 1.12522 0.85601 0.79050 0.78774 0.78842 1.18597 1.19675 1.16920 0.91567 0.93645 0.93246 0.93788 0.89841 0.92117 0.92220 0.75272 0.91028 0.90135 0.92858 0.91842 0.91021 0.89564 0.94013 0.92665 0.97875 0.97258 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 8.80 71.98 0.63 -3.48 16 2 C -0.10 -2.56 5.65 30.59 0.17 -2.38 16 3 C 0.09 1.99 2.03 45.39 0.09 2.08 16 4 H 0.07 1.37 7.70 -2.39 -0.02 1.35 16 5 C -0.09 -1.99 2.74 -9.41 -0.03 -2.02 16 6 H 0.07 1.78 8.06 -2.39 -0.02 1.77 16 7 C 0.09 1.40 6.49 71.98 0.47 1.86 16 8 O -0.59 -9.57 13.51 -148.98 -2.01 -11.58 16 9 C -0.12 -2.51 6.27 31.78 0.20 -2.31 16 10 C 0.04 1.04 6.14 86.65 0.53 1.57 16 11 N -0.54 -15.83 4.60 -860.66 -3.96 -19.79 16 12 C 0.05 1.54 4.46 86.30 0.39 1.92 16 13 C 0.05 1.90 6.04 71.98 0.44 2.33 16 14 O -0.39 -18.89 10.27 -148.98 -1.53 -20.42 16 15 C 0.18 9.41 4.76 71.24 0.34 9.75 16 16 C -0.54 -34.15 9.99 25.60 0.26 -33.89 16 17 H 0.03 2.00 8.06 -2.91 -0.02 1.97 16 18 C 0.01 0.73 5.47 84.65 0.46 1.19 16 19 N -0.94 -60.88 13.96 21.45 0.30 -60.58 16 20 Si 0.96 44.60 27.47 68.60 1.88 46.48 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 24 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.04 1.55 5.97 -2.39 -0.01 1.53 16 26 H 0.05 1.29 8.14 -2.38 -0.02 1.28 16 27 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.08 1.58 7.97 -2.39 -0.02 1.56 16 29 H 0.06 0.72 8.11 -2.39 -0.02 0.70 16 30 H 0.06 0.76 7.97 -2.39 -0.02 0.74 16 31 H 0.40 2.50 9.12 -74.06 -0.68 1.83 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.42 8.02 -2.39 -0.02 1.40 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.50 6.94 -2.39 -0.02 1.48 16 36 H 0.07 1.54 7.96 -2.38 -0.02 1.52 16 37 H 0.09 2.48 5.26 -2.39 -0.01 2.47 16 38 H 0.04 1.40 7.04 -2.38 -0.02 1.38 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.00 0.18 7.57 -2.39 -0.02 0.16 16 41 H 0.01 0.48 7.20 -2.39 -0.02 0.47 16 42 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -75.84 329.53 -1.12 -76.96 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.25 Total: 12.30 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: 3.95 Total: -23.38 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.66 Total: -80.37 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -3.54 Total: -32.00 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -75.84 -1.12 -76.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395225316.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.307 kcal (2) G-P(sol) polarization free energy of solvation -75.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds