Wall clock time and date at job start Mon Mar 30 2020 04:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46893 * 109.47408 * 179.97438 * 12 11 10 14 14 C 1.46856 * 110.99842 * 294.21110 * 13 12 11 15 15 C 1.53041 * 109.52145 * 174.16060 * 14 13 12 16 16 C 1.53118 * 109.27945 * 59.17485 * 15 14 13 17 17 H 1.08997 * 109.51954 * 182.43909 * 16 15 14 18 18 O 1.42909 * 109.57207 * 62.28239 * 16 15 14 19 19 C 1.53114 * 109.16268 * 302.34816 * 16 15 14 20 20 H 1.09005 * 109.50329 * 297.70874 * 19 16 15 21 21 C 1.53004 * 109.50311 * 177.59393 * 19 16 15 22 22 O 1.42894 * 109.46777 * 175.19302 * 21 19 16 23 23 C 1.46845 * 111.00237 * 170.00071 * 13 12 11 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 28 28 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 29 29 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 30 30 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 31 31 H 1.08994 * 109.47075 * 299.99920 * 12 11 10 32 32 H 1.09003 * 109.46836 * 59.99354 * 12 11 10 33 33 H 1.09004 * 109.45957 * 294.17194 * 14 13 12 34 34 H 1.08999 * 109.46061 * 54.14183 * 14 13 12 35 35 H 1.08999 * 109.50014 * 299.23371 * 15 14 13 36 36 H 1.08999 * 109.50213 * 179.11753 * 15 14 13 37 37 H 0.96697 * 113.99495 * 60.28667 * 18 16 15 38 38 H 1.08992 * 109.46900 * 295.19153 * 21 19 16 39 39 H 1.08996 * 109.46704 * 55.19704 * 21 19 16 40 40 H 0.96709 * 113.99640 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.45729 * 305.85256 * 23 13 12 42 42 H 1.08997 * 109.46511 * 65.83009 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 7 1.7400 -7.4222 -0.0018 14 6 0.9904 -7.5971 1.2489 15 6 0.1261 -8.8566 1.1552 16 6 1.0259 -10.0697 0.9036 17 1 0.4108 -10.9627 0.7930 18 8 1.9202 -10.2392 2.0053 19 6 1.8310 -9.8410 -0.3786 20 1 1.1499 -9.7517 -1.2249 21 6 2.7769 -11.0220 -0.6054 22 8 3.4462 -10.8625 -1.8577 23 6 2.6460 -8.5530 -0.2405 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 2.8719 -3.6044 -0.8906 28 1 2.8719 -3.6044 0.8894 29 1 0.8533 -5.0451 0.8886 30 1 0.8539 -5.0446 -0.8913 31 1 3.1010 -6.0919 -0.8918 32 1 3.1012 -6.0927 0.8881 33 1 1.6888 -7.6969 2.0798 34 1 0.3515 -6.7296 1.4137 35 1 -0.5818 -8.7518 0.3330 36 1 -0.4182 -8.9948 2.0894 37 1 1.4775 -10.3887 2.8518 38 1 3.5127 -11.0576 0.1979 39 1 2.2042 -11.9494 -0.6150 40 1 4.0631 -11.5770 -2.0678 41 1 3.2094 -8.3796 -1.1573 42 1 3.3364 -8.6484 0.5975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396873927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:28 Heat of formation + Delta-G solvation = -124.086647 kcal Electronic energy + Delta-G solvation = -19541.869624 eV Core-core repulsion = 16520.699805 eV Total energy + Delta-G solvation = -3021.169819 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.86413 -36.98552 -36.58628 -34.47802 -32.81838 -31.67344 -31.21001 -28.31902 -25.79065 -25.08239 -23.14923 -22.40215 -20.64239 -19.96442 -19.78764 -17.57233 -17.09614 -16.16159 -16.06238 -15.53109 -14.91422 -14.77791 -14.44927 -14.34121 -13.98360 -13.93919 -13.26622 -12.65141 -12.53984 -12.19259 -11.97255 -11.69311 -11.63785 -11.32491 -11.29334 -11.06301 -10.89312 -10.58355 -10.46751 -10.40119 -10.27251 -10.11020 -9.96116 -9.52679 -9.19183 -8.95796 -8.28314 -8.13292 -5.93644 -3.95643 3.37208 3.41049 3.43955 3.86313 3.87979 4.13883 4.51229 4.58316 4.64726 4.88594 4.90708 5.11596 5.30334 5.31797 5.36677 5.41697 5.48965 5.54112 5.57728 5.62046 5.73348 5.93570 5.95441 6.00986 6.07851 6.15759 6.25907 6.35280 6.60695 6.89806 7.04769 7.17421 7.26559 7.34469 7.36132 7.39975 7.75764 7.92603 8.07941 8.51005 9.11750 9.67847 11.17730 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.039907 B = 0.003249 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.467800 B = 8616.694018 C = 8999.706082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.022 3.978 10 C -0.110 4.110 11 C -0.113 4.113 12 C 0.058 3.942 13 N -0.540 5.540 14 C 0.055 3.945 15 C -0.148 4.148 16 C 0.109 3.891 17 H 0.055 0.945 18 O -0.565 6.565 19 C -0.075 4.075 20 H 0.096 0.904 21 C 0.085 3.915 22 O -0.572 6.572 23 C 0.069 3.931 24 H 0.260 0.740 25 H 0.014 0.986 26 H 0.015 0.985 27 H 0.047 0.953 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.376 0.624 38 H 0.053 0.947 39 H 0.043 0.957 40 H 0.377 0.623 41 H 0.079 0.921 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.631 -24.918 2.221 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.148 4.148 11 C -0.151 4.151 12 C -0.069 4.069 13 N -0.264 5.264 14 C -0.073 4.073 15 C -0.186 4.186 16 C 0.050 3.950 17 H 0.073 0.927 18 O -0.371 6.371 19 C -0.094 4.094 20 H 0.114 0.886 21 C 0.007 3.993 22 O -0.378 6.378 23 C -0.059 4.059 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.223 0.777 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.224 0.776 41 H 0.097 0.903 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.224 -24.143 1.352 24.283 hybrid contribution 0.839 0.325 1.170 1.476 sum 3.063 -23.818 2.522 24.146 Atomic orbital electron populations 1.69963 1.06041 1.26580 1.51051 1.25035 0.94846 0.99199 0.95456 0.86669 0.79585 0.83220 0.78585 1.21319 1.20299 1.20255 1.21271 0.92997 0.91260 1.50317 0.92827 1.19080 0.94017 0.91314 0.97098 1.21603 0.99097 0.94036 1.00045 1.21670 0.97877 0.93609 1.01911 1.22191 0.95902 0.88383 1.00403 1.61957 1.27713 1.02223 1.34555 1.22043 0.96850 0.97729 0.90720 1.22271 0.98419 0.95189 1.02675 1.21807 0.90261 0.96389 0.86532 0.92676 1.86516 1.36745 1.95097 1.18692 1.21196 0.97340 0.94522 0.96328 0.88621 1.22103 0.94959 0.96760 0.85468 1.86503 1.61226 1.51237 1.38798 1.21942 0.93694 0.89268 1.01037 0.93029 0.96803 0.96613 0.93457 0.93739 0.92688 0.91719 0.91021 0.95262 0.94549 0.90013 0.89986 0.91177 0.77671 0.92871 0.93916 0.77599 0.90298 0.94516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.29 55.43 0.74 -26.94 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -15.26 9.11 -34.44 -0.31 -15.58 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.11 -2.36 5.15 -26.73 -0.14 -2.50 16 11 C -0.11 -2.05 5.14 -26.73 -0.14 -2.18 16 12 C 0.06 0.92 4.96 -3.83 -0.02 0.90 16 13 N -0.54 -7.67 4.66 -234.67 -1.09 -8.77 16 14 C 0.05 0.69 5.16 -3.83 -0.02 0.67 16 15 C -0.15 -1.43 5.80 -26.65 -0.15 -1.58 16 16 C 0.11 0.98 3.26 -26.61 -0.09 0.90 16 17 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 18 O -0.56 -5.08 11.52 -35.23 -0.41 -5.48 16 19 C -0.08 -0.81 2.43 -90.54 -0.22 -1.03 16 20 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 21 C 0.09 0.79 6.19 37.16 0.23 1.02 16 22 O -0.57 -5.58 13.21 -35.23 -0.47 -6.05 16 23 C 0.07 0.89 4.50 -3.83 -0.02 0.87 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.01 0.39 8.14 -51.92 -0.42 -0.04 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.99 6.43 -51.93 -0.33 0.66 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.12 7.99 -51.93 -0.41 0.70 16 32 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 33 H 0.04 0.48 7.76 -51.93 -0.40 0.07 16 34 H 0.08 1.11 6.21 -51.93 -0.32 0.79 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.38 1.93 9.09 45.56 0.41 2.34 16 38 H 0.05 0.51 7.78 -51.93 -0.40 0.11 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.38 1.89 9.12 45.56 0.42 2.31 16 41 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 42 H 0.04 0.51 7.76 -51.93 -0.40 0.11 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -33.43 331.10 -8.41 -41.85 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.04 Total: -0.24 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -1.11 Total: -16.52 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.36 Total: -35.71 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -0.87 Total: -11.53 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.43 -8.41 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396873927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.240 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds