Wall clock time and date at job start Mon Mar 30 2020 04:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47355 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 N 1.46893 * 109.47408 * 179.97438 * 12 11 10 14 14 C 1.46856 * 110.99842 * 294.21110 * 13 12 11 15 15 C 1.53041 * 109.52145 * 174.16060 * 14 13 12 16 16 C 1.53118 * 109.27945 * 59.17485 * 15 14 13 17 17 H 1.08997 * 109.51954 * 182.43909 * 16 15 14 18 18 O 1.42909 * 109.57207 * 62.28239 * 16 15 14 19 19 C 1.53114 * 109.16268 * 302.34816 * 16 15 14 20 20 H 1.09005 * 109.50329 * 297.70874 * 19 16 15 21 21 C 1.53004 * 109.50311 * 177.59393 * 19 16 15 22 22 O 1.42894 * 109.46777 * 175.19302 * 21 19 16 23 23 C 1.46845 * 111.00237 * 170.00071 * 13 12 11 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 28 28 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 29 29 H 1.09002 * 109.46807 * 299.99709 * 11 10 9 30 30 H 1.08992 * 109.47112 * 59.99408 * 11 10 9 31 31 H 1.08994 * 109.47075 * 299.99920 * 12 11 10 32 32 H 1.09003 * 109.46836 * 59.99354 * 12 11 10 33 33 H 1.09004 * 109.45957 * 294.17194 * 14 13 12 34 34 H 1.08999 * 109.46061 * 54.14183 * 14 13 12 35 35 H 1.08999 * 109.50014 * 299.23371 * 15 14 13 36 36 H 1.08999 * 109.50213 * 179.11753 * 15 14 13 37 37 H 0.96697 * 113.99495 * 60.28667 * 18 16 15 38 38 H 1.08992 * 109.46900 * 295.19153 * 21 19 16 39 39 H 1.08996 * 109.46704 * 55.19704 * 21 19 16 40 40 H 0.96709 * 113.99640 * 180.02562 * 22 21 19 41 41 H 1.09000 * 109.45729 * 305.85256 * 23 13 12 42 42 H 1.08997 * 109.46511 * 65.83009 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1501 -0.0018 13 7 1.7400 -7.4222 -0.0018 14 6 0.9904 -7.5971 1.2489 15 6 0.1261 -8.8566 1.1552 16 6 1.0259 -10.0697 0.9036 17 1 0.4108 -10.9627 0.7930 18 8 1.9202 -10.2392 2.0053 19 6 1.8310 -9.8410 -0.3786 20 1 1.1499 -9.7517 -1.2249 21 6 2.7769 -11.0220 -0.6054 22 8 3.4462 -10.8625 -1.8577 23 6 2.6460 -8.5530 -0.2405 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 2.8719 -3.6044 -0.8906 28 1 2.8719 -3.6044 0.8894 29 1 0.8533 -5.0451 0.8886 30 1 0.8539 -5.0446 -0.8913 31 1 3.1010 -6.0919 -0.8918 32 1 3.1012 -6.0927 0.8881 33 1 1.6888 -7.6969 2.0798 34 1 0.3515 -6.7296 1.4137 35 1 -0.5818 -8.7518 0.3330 36 1 -0.4182 -8.9948 2.0894 37 1 1.4775 -10.3887 2.8518 38 1 3.5127 -11.0576 0.1979 39 1 2.2042 -11.9494 -0.6150 40 1 4.0631 -11.5770 -2.0678 41 1 3.2094 -8.3796 -1.1573 42 1 3.3364 -8.6484 0.5975 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396873927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:27 Heat of formation + Delta-G solvation = -150.859769 kcal Electronic energy + Delta-G solvation = -19543.030593 eV Core-core repulsion = 16520.699805 eV Total energy + Delta-G solvation = -3022.330788 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.74520 -37.94760 -37.40304 -36.14560 -34.47664 -32.98798 -32.18275 -30.03409 -26.88246 -26.51222 -24.56511 -23.42053 -22.20456 -21.43708 -20.71578 -18.42559 -18.27093 -17.80838 -17.04180 -16.62650 -16.50593 -16.08280 -15.62173 -15.42025 -14.95325 -14.90679 -14.48957 -14.32616 -13.71772 -13.62999 -13.40426 -13.26092 -12.82337 -12.68158 -12.50465 -12.36503 -12.22451 -12.10328 -12.05085 -11.83590 -11.39607 -11.33157 -11.23442 -11.06042 -10.80576 -10.65557 -10.55138 -9.26400 -8.20020 -6.31755 1.39100 1.42899 1.50834 2.40838 2.86676 3.12388 3.23797 3.42321 3.77958 3.86455 4.05355 4.08222 4.12166 4.23389 4.36642 4.45292 4.50874 4.54887 4.59253 4.64508 4.71050 4.73017 4.82709 4.87150 4.89500 4.99049 5.09904 5.19526 5.21718 5.25979 5.32107 5.35818 5.53867 5.76605 5.85892 6.11758 6.18441 6.26009 6.85215 6.90726 6.93175 7.37387 8.91778 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.039907 B = 0.003249 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.467800 B = 8616.694018 C = 8999.706082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.281 1.281 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.097 4.097 11 C -0.100 4.100 12 C 0.067 3.933 13 N -0.548 5.548 14 C 0.052 3.948 15 C -0.143 4.143 16 C 0.116 3.884 17 H 0.082 0.918 18 O -0.578 6.578 19 C -0.079 4.079 20 H 0.087 0.913 21 C 0.090 3.910 22 O -0.594 6.594 23 C 0.074 3.926 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.011 1.011 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.394 0.606 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.396 0.604 41 H 0.065 0.935 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.328 -26.002 2.647 26.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.207 1.207 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.012 4.012 10 C -0.135 4.135 11 C -0.138 4.138 12 C -0.061 4.061 13 N -0.273 5.273 14 C -0.076 4.076 15 C -0.181 4.181 16 C 0.057 3.943 17 H 0.100 0.900 18 O -0.387 6.387 19 C -0.098 4.098 20 H 0.105 0.895 21 C 0.012 3.988 22 O -0.403 6.403 23 C -0.054 4.054 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.243 0.757 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.246 0.754 41 H 0.083 0.917 42 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.932 -25.262 1.788 25.494 hybrid contribution 0.603 0.643 1.041 1.364 sum 3.535 -24.619 2.828 25.032 Atomic orbital electron populations 1.70101 1.07853 1.27867 1.51616 1.26030 0.95822 1.03484 0.94654 0.85474 0.78272 0.77914 0.79228 1.20658 1.19093 1.19141 1.21720 0.93565 0.92558 1.50700 0.92245 1.18996 0.94426 0.93164 0.94615 1.21411 0.98041 0.93735 1.00353 1.21473 0.97891 0.92995 1.01417 1.21988 0.95111 0.88485 1.00468 1.61949 1.27824 1.01881 1.35612 1.22097 0.96769 0.98917 0.89811 1.22279 0.98051 0.93952 1.03833 1.21734 0.89868 0.96904 0.85801 0.90027 1.86481 1.37409 1.95108 1.19672 1.21241 0.97432 0.93828 0.97255 0.89458 1.22053 0.94762 0.96802 0.85152 1.86457 1.61992 1.52783 1.39021 1.21890 0.93677 0.89965 0.99851 0.92725 0.99192 0.99224 0.93129 0.93277 0.92767 0.92655 0.90959 0.95219 0.94924 0.91431 0.90396 0.88773 0.75652 0.93277 0.91777 0.75381 0.91653 0.95425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.57 13.29 21.45 0.28 -58.28 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 3 Si 0.97 45.40 29.54 68.60 2.03 47.42 16 4 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 7 C -0.55 -32.52 9.11 25.60 0.23 -32.29 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.10 -4.25 5.15 30.59 0.16 -4.09 16 11 C -0.10 -3.68 5.14 30.59 0.16 -3.53 16 12 C 0.07 2.11 4.96 86.30 0.43 2.54 16 13 N -0.55 -15.43 4.66 -896.35 -4.17 -19.61 16 14 C 0.05 1.28 5.16 86.33 0.45 1.72 16 15 C -0.14 -2.50 5.80 30.65 0.18 -2.32 16 16 C 0.12 1.80 3.26 30.67 0.10 1.90 16 17 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 18 O -0.58 -8.97 11.52 -148.98 -1.72 -10.69 16 19 C -0.08 -1.58 2.43 -10.74 -0.03 -1.60 16 20 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 21 C 0.09 1.50 6.19 71.98 0.45 1.95 16 22 O -0.59 -10.78 13.21 -148.98 -1.97 -12.74 16 23 C 0.07 1.89 4.50 86.33 0.39 2.28 16 24 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 25 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 26 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 27 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.05 2.00 6.43 -2.39 -0.02 1.98 16 30 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.07 2.24 7.99 -2.39 -0.02 2.23 16 32 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 33 H 0.03 0.83 7.76 -2.39 -0.02 0.81 16 34 H 0.07 1.84 6.21 -2.39 -0.01 1.82 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.39 2.92 9.09 -74.06 -0.67 2.25 16 38 H 0.05 0.86 7.78 -2.39 -0.02 0.84 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.40 3.35 9.12 -74.05 -0.68 2.67 16 41 H 0.06 1.82 7.72 -2.39 -0.02 1.80 16 42 H 0.03 0.75 7.76 -2.39 -0.02 0.73 16 Total: -1.00 -72.08 331.10 -2.79 -74.87 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -0.36 Total: 10.61 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 3.12 Total: -31.59 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -3.89 Total: -77.89 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -3.68 Total: -23.43 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -72.08 -2.79 -74.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396873927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.990 kcal (2) G-P(sol) polarization free energy of solvation -72.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds