Wall clock time and date at job start Mon Mar 30 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47218 * 2 1 4 4 O 1.42899 * 109.47226 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47632 * 239.99479 * 2 1 3 6 6 O 1.42900 * 109.47088 * 59.99994 * 5 2 1 7 7 C 1.53004 * 109.47083 * 119.99210 * 2 1 3 8 8 N 1.46904 * 109.47149 * 294.32193 * 7 2 1 9 9 C 1.46842 * 110.99963 * 85.22284 * 8 7 2 10 10 C 1.53169 * 109.55562 * 185.84213 * 9 8 7 11 11 C 1.53122 * 109.20443 * 300.85231 * 10 9 8 12 12 C 1.53120 * 109.21139 * 57.62954 * 11 10 9 13 13 H 1.09000 * 109.50239 * 62.24905 * 12 11 10 14 14 C 1.50699 * 109.50725 * 182.33007 * 12 11 10 15 15 H 1.07998 * 119.99930 * 119.99699 * 14 12 11 16 16 C 1.37876 * 119.99892 * 300.00417 * 14 12 11 17 17 N 1.31511 * 119.99726 * 179.97438 * 16 14 12 18 18 Si 1.86794 * 120.00209 * 359.97438 * 16 14 12 19 19 H 1.48497 * 109.47318 * 89.99991 * 18 16 14 20 20 H 1.48500 * 109.47202 * 210.00547 * 18 16 14 21 21 H 1.48506 * 109.46959 * 330.00315 * 18 16 14 22 22 C 1.46844 * 110.99573 * 209.42817 * 8 7 2 23 23 H 1.09004 * 109.47069 * 315.25479 * 1 2 3 24 24 H 1.09004 * 109.47003 * 75.25020 * 1 2 3 25 25 H 1.09000 * 109.47179 * 195.24945 * 1 2 3 26 26 H 1.09003 * 109.46854 * 299.99349 * 3 2 1 27 27 H 1.08992 * 109.47342 * 59.99340 * 3 2 1 28 28 H 0.96705 * 113.99909 * 179.97438 * 4 3 2 29 29 H 1.08995 * 109.47557 * 179.97438 * 5 2 1 30 30 H 1.09002 * 109.46862 * 300.00210 * 5 2 1 31 31 H 0.96696 * 114.00356 * 180.02562 * 6 5 2 32 32 H 1.08999 * 109.47179 * 174.31624 * 7 2 1 33 33 H 1.09003 * 109.46743 * 54.32300 * 7 2 1 34 34 H 1.09001 * 109.46194 * 305.85062 * 9 8 7 35 35 H 1.09000 * 109.46612 * 65.82950 * 9 8 7 36 36 H 1.09004 * 109.58871 * 180.91383 * 10 9 8 37 37 H 1.08993 * 109.49047 * 60.74636 * 10 9 8 38 38 H 1.08998 * 109.52889 * 297.69536 * 11 10 9 39 39 H 1.09005 * 109.52389 * 177.56034 * 11 10 9 40 40 H 0.97008 * 120.00163 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.46778 * 54.14765 * 22 8 7 42 42 H 1.09000 * 109.46586 * 294.17700 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 2.0401 -0.7213 -1.2491 6 8 1.5638 -0.0478 -2.4159 7 6 2.0400 -0.7211 1.2494 8 7 1.6654 0.0462 2.4448 9 6 0.3069 -0.2956 2.8851 10 6 -0.1042 0.6231 4.0398 11 6 0.8861 0.4536 5.1953 12 6 2.2995 0.7686 4.6979 13 1 2.3468 1.8069 4.3697 14 6 3.2868 0.5485 5.8150 15 1 4.0803 -0.1750 5.6996 16 6 3.1770 1.2707 6.9843 17 7 4.0383 1.0783 7.9593 18 14 1.8049 2.5225 7.1836 19 1 0.6129 1.8609 7.7722 20 1 2.2583 3.6152 8.0812 21 1 1.4528 3.0866 5.8558 22 6 2.6397 -0.1539 3.5251 23 1 -0.3633 0.7299 0.7235 24 1 -0.3633 0.2617 -0.9938 25 1 -0.3633 -0.9915 0.2703 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9564 0.8898 28 1 3.8623 2.3260 -0.0010 29 1 3.1300 -0.7209 -1.2493 30 1 1.6767 -1.7490 -1.2490 31 1 1.8488 -0.4515 -3.2471 32 1 3.1252 -0.8101 1.2000 33 1 1.5960 -1.7152 1.3017 34 1 -0.3872 -0.1671 2.0545 35 1 0.2838 -1.3324 3.2206 36 1 -1.1063 0.3592 4.3778 37 1 -0.0947 1.6591 3.7013 38 1 0.8486 -0.5731 5.5596 39 1 0.6236 1.1367 6.0032 40 1 3.9613 1.5867 8.7819 41 1 3.6401 0.0776 3.1594 42 1 2.6057 -1.1914 3.8574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397625467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:23 Heat of formation + Delta-G solvation = -98.293431 kcal Electronic energy + Delta-G solvation = -20941.826606 eV Core-core repulsion = 17921.775266 eV Total energy + Delta-G solvation = -3020.051341 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.40055 -37.60115 -35.99362 -34.59900 -32.70978 -31.51947 -30.26020 -27.02818 -25.65626 -25.50534 -24.69648 -22.23385 -21.09801 -18.95834 -18.65710 -17.45693 -16.98043 -16.64455 -15.84390 -15.11186 -14.92431 -14.45090 -14.09938 -13.85904 -13.53053 -13.25501 -13.00396 -12.82812 -12.48145 -12.22277 -12.11616 -12.04440 -11.81785 -11.38175 -11.01453 -10.77752 -10.64955 -10.44904 -10.21761 -10.01050 -9.97268 -9.88410 -9.63903 -9.54945 -8.99838 -8.86407 -8.47749 -7.71903 -6.03400 -4.01954 3.30758 3.41677 3.45280 3.96177 4.45638 4.59056 4.65500 4.87978 4.95481 5.24111 5.28610 5.42665 5.47712 5.53632 5.58177 5.69388 5.77702 5.81223 5.92092 5.93014 6.01547 6.12932 6.17067 6.22575 6.28640 6.33387 6.39171 6.48760 6.55193 6.68336 6.86368 6.88901 7.26348 7.48359 7.53492 7.70697 7.71666 7.92257 7.93165 8.56855 9.00386 9.59768 11.10035 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.033142 B = 0.005676 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.634363 B = 4931.616047 C = 5198.883013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.101 3.899 4 O -0.572 6.572 5 C 0.088 3.912 6 O -0.571 6.571 7 C 0.069 3.931 8 N -0.533 5.533 9 C 0.044 3.956 10 C -0.119 4.119 11 C -0.122 4.122 12 C 0.021 3.979 13 H 0.034 0.966 14 C -0.512 4.512 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.904 5.904 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.299 1.299 21 H -0.264 1.264 22 C 0.080 3.920 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.375 0.625 29 H 0.054 0.946 30 H 0.039 0.961 31 H 0.374 0.626 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.172 -2.054 -17.902 19.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.050 4.050 3 C 0.023 3.977 4 O -0.376 6.376 5 C 0.010 3.990 6 O -0.375 6.375 7 C -0.060 4.060 8 N -0.257 5.257 9 C -0.083 4.083 10 C -0.157 4.157 11 C -0.160 4.160 12 C 0.002 3.998 13 H 0.052 0.948 14 C -0.550 4.550 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.542 5.542 18 Si 0.720 3.280 19 H -0.208 1.208 20 H -0.227 1.227 21 H -0.189 1.189 22 C -0.047 4.047 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.221 0.779 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.220 0.780 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.479 -1.779 -17.376 19.000 hybrid contribution -0.389 -0.064 0.203 0.443 sum -7.868 -1.843 -17.173 18.979 Atomic orbital electron populations 1.21971 0.93973 1.01809 1.02123 1.20546 0.95775 0.95577 0.93083 1.21978 0.80577 0.95557 0.99573 1.86381 1.20185 1.33322 1.97754 1.22100 0.97938 0.93902 0.85043 1.86434 1.77511 1.57619 1.15980 1.21950 1.00737 0.93553 0.89729 1.61805 1.02455 1.55919 1.05569 1.22487 0.91057 0.96892 0.97897 1.21669 0.98174 0.99783 0.96066 1.22024 0.97134 1.00824 0.96008 1.19146 0.91985 0.95736 0.92924 0.94808 1.21019 1.12758 1.23128 0.98133 0.91025 1.24980 0.95851 0.96583 0.95717 1.69906 1.36595 1.41868 1.05859 0.86814 0.82029 0.81116 0.78074 1.20811 1.22713 1.18880 1.22090 0.94040 0.97978 0.90558 0.91241 0.92105 0.92739 0.94446 0.92007 0.77938 0.92780 0.94282 0.77956 0.90515 0.95038 0.90289 0.95714 0.92976 0.92007 0.92679 0.93711 0.92755 0.91368 0.95888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 6.96 37.16 0.26 -1.44 16 2 C -0.05 -0.64 0.51 -154.51 -0.08 -0.72 16 3 C 0.10 1.39 5.49 37.16 0.20 1.59 16 4 O -0.57 -8.00 12.42 -35.23 -0.44 -8.44 16 5 C 0.09 1.01 5.77 37.15 0.21 1.22 16 6 O -0.57 -6.10 12.09 -35.23 -0.43 -6.53 16 7 C 0.07 1.02 4.00 -3.82 -0.02 1.01 16 8 N -0.53 -9.17 3.50 -234.58 -0.82 -9.99 16 9 C 0.04 0.71 4.96 -3.77 -0.02 0.69 16 10 C -0.12 -2.11 6.11 -26.58 -0.16 -2.27 16 11 C -0.12 -2.68 4.73 -26.61 -0.13 -2.80 16 12 C 0.02 0.51 1.85 -91.69 -0.17 0.34 16 13 H 0.03 0.85 7.21 -51.93 -0.37 0.47 16 14 C -0.51 -14.50 9.15 -34.44 -0.32 -14.81 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 17 N -0.90 -27.98 13.96 55.43 0.77 -27.20 16 18 Si 0.89 22.38 24.35 -169.99 -4.14 18.24 16 19 H -0.28 -6.90 6.89 56.52 0.39 -6.51 16 20 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 21 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 22 C 0.08 1.65 4.59 -3.83 -0.02 1.64 16 23 H 0.07 0.87 6.29 -51.93 -0.33 0.54 16 24 H 0.06 0.71 7.29 -51.93 -0.38 0.33 16 25 H 0.05 0.61 7.58 -51.93 -0.39 0.22 16 26 H 0.04 0.50 7.68 -51.93 -0.40 0.10 16 27 H 0.06 0.94 7.46 -51.93 -0.39 0.56 16 28 H 0.37 3.89 9.12 45.56 0.42 4.31 16 29 H 0.05 0.65 7.68 -51.93 -0.40 0.25 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.37 2.31 9.12 45.56 0.42 2.73 16 32 H 0.08 1.22 7.35 -51.93 -0.38 0.83 16 33 H 0.03 0.44 7.77 -51.93 -0.40 0.04 16 34 H 0.08 1.09 3.99 -51.93 -0.21 0.88 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.04 1.04 3.34 -51.93 -0.17 0.87 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.07 1.45 7.90 -51.93 -0.41 1.04 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 311.34 15.07 4.69 4.69 Total: -1.00 -32.20 311.34 -6.22 -38.42 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.54 Total: 4.43 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -0.32 Total: -13.62 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.05 Total: -37.19 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.86 Total: -14.97 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.24 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.20 -6.22 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397625467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.876 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds