Wall clock time and date at job start Mon Mar 30 2020 05:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47218 * 2 1 4 4 O 1.42899 * 109.47226 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47632 * 239.99479 * 2 1 3 6 6 O 1.42900 * 109.47088 * 59.99994 * 5 2 1 7 7 C 1.53004 * 109.47083 * 119.99210 * 2 1 3 8 8 N 1.46904 * 109.47149 * 294.32193 * 7 2 1 9 9 C 1.46842 * 110.99963 * 85.22284 * 8 7 2 10 10 C 1.53169 * 109.55562 * 185.84213 * 9 8 7 11 11 C 1.53122 * 109.20443 * 300.85231 * 10 9 8 12 12 C 1.53120 * 109.21139 * 57.62954 * 11 10 9 13 13 H 1.09000 * 109.50239 * 62.24905 * 12 11 10 14 14 C 1.50699 * 109.50725 * 182.33007 * 12 11 10 15 15 H 1.07998 * 119.99930 * 119.99699 * 14 12 11 16 16 C 1.37876 * 119.99892 * 300.00417 * 14 12 11 17 17 N 1.31511 * 119.99726 * 179.97438 * 16 14 12 18 18 Si 1.86794 * 120.00209 * 359.97438 * 16 14 12 19 19 H 1.48497 * 109.47318 * 89.99991 * 18 16 14 20 20 H 1.48500 * 109.47202 * 210.00547 * 18 16 14 21 21 H 1.48506 * 109.46959 * 330.00315 * 18 16 14 22 22 C 1.46844 * 110.99573 * 209.42817 * 8 7 2 23 23 H 1.09004 * 109.47069 * 315.25479 * 1 2 3 24 24 H 1.09004 * 109.47003 * 75.25020 * 1 2 3 25 25 H 1.09000 * 109.47179 * 195.24945 * 1 2 3 26 26 H 1.09003 * 109.46854 * 299.99349 * 3 2 1 27 27 H 1.08992 * 109.47342 * 59.99340 * 3 2 1 28 28 H 0.96705 * 113.99909 * 179.97438 * 4 3 2 29 29 H 1.08995 * 109.47557 * 179.97438 * 5 2 1 30 30 H 1.09002 * 109.46862 * 300.00210 * 5 2 1 31 31 H 0.96696 * 114.00356 * 180.02562 * 6 5 2 32 32 H 1.08999 * 109.47179 * 174.31624 * 7 2 1 33 33 H 1.09003 * 109.46743 * 54.32300 * 7 2 1 34 34 H 1.09001 * 109.46194 * 305.85062 * 9 8 7 35 35 H 1.09000 * 109.46612 * 65.82950 * 9 8 7 36 36 H 1.09004 * 109.58871 * 180.91383 * 10 9 8 37 37 H 1.08993 * 109.49047 * 60.74636 * 10 9 8 38 38 H 1.08998 * 109.52889 * 297.69536 * 11 10 9 39 39 H 1.09005 * 109.52389 * 177.56034 * 11 10 9 40 40 H 0.97008 * 120.00163 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.46778 * 54.14765 * 22 8 7 42 42 H 1.09000 * 109.46586 * 294.17700 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 2.0401 -0.7213 -1.2491 6 8 1.5638 -0.0478 -2.4159 7 6 2.0400 -0.7211 1.2494 8 7 1.6654 0.0462 2.4448 9 6 0.3069 -0.2956 2.8851 10 6 -0.1042 0.6231 4.0398 11 6 0.8861 0.4536 5.1953 12 6 2.2995 0.7686 4.6979 13 1 2.3468 1.8069 4.3697 14 6 3.2868 0.5485 5.8150 15 1 4.0803 -0.1750 5.6996 16 6 3.1770 1.2707 6.9843 17 7 4.0383 1.0783 7.9593 18 14 1.8049 2.5225 7.1836 19 1 0.6129 1.8609 7.7722 20 1 2.2583 3.6152 8.0812 21 1 1.4528 3.0866 5.8558 22 6 2.6397 -0.1539 3.5251 23 1 -0.3633 0.7299 0.7235 24 1 -0.3633 0.2617 -0.9938 25 1 -0.3633 -0.9915 0.2703 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9564 0.8898 28 1 3.8623 2.3260 -0.0010 29 1 3.1300 -0.7209 -1.2493 30 1 1.6767 -1.7490 -1.2490 31 1 1.8488 -0.4515 -3.2471 32 1 3.1252 -0.8101 1.2000 33 1 1.5960 -1.7152 1.3017 34 1 -0.3872 -0.1671 2.0545 35 1 0.2838 -1.3324 3.2206 36 1 -1.1063 0.3592 4.3778 37 1 -0.0947 1.6591 3.7013 38 1 0.8486 -0.5731 5.5596 39 1 0.6236 1.1367 6.0032 40 1 3.9613 1.5867 8.7819 41 1 3.6401 0.0776 3.1594 42 1 2.6057 -1.1914 3.8574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397625467.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:23 Heat of formation + Delta-G solvation = -125.288943 kcal Electronic energy + Delta-G solvation = -20942.997220 eV Core-core repulsion = 17921.775266 eV Total energy + Delta-G solvation = -3021.221954 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 257.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63938 -38.86399 -36.94372 -35.98960 -34.51591 -32.98171 -32.01534 -28.09930 -27.08778 -26.61564 -26.33741 -23.69382 -22.78592 -20.48912 -19.83123 -18.84593 -18.28522 -17.99794 -17.21350 -16.54206 -16.19701 -15.69932 -15.50388 -15.36064 -14.89553 -14.82570 -14.54493 -14.15992 -13.93184 -13.68179 -13.43944 -13.10337 -12.96454 -12.85532 -12.77242 -12.28312 -12.03558 -11.86245 -11.76975 -11.62957 -11.45078 -11.24863 -10.99395 -10.82835 -10.67965 -10.60820 -10.52663 -9.10865 -8.30306 -6.33672 1.29690 1.36019 1.47471 2.32962 2.87155 3.05721 3.50190 3.72296 3.88677 3.91999 4.07191 4.14892 4.21536 4.36413 4.45637 4.50326 4.54813 4.64966 4.69801 4.74259 4.79305 4.84250 4.87185 4.94249 5.00143 5.03241 5.09062 5.15313 5.19657 5.26768 5.30035 5.45809 5.54181 5.64743 5.75084 6.19289 6.31288 6.39554 6.73941 6.95855 7.01224 7.31964 8.86851 Molecular weight = 257.18amu Principal moments of inertia in cm(-1) A = 0.033142 B = 0.005676 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.634363 B = 4931.616047 C = 5198.883013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C 0.104 3.896 4 O -0.587 6.587 5 C 0.095 3.905 6 O -0.582 6.582 7 C 0.071 3.929 8 N -0.534 5.534 9 C 0.044 3.956 10 C -0.114 4.114 11 C -0.122 4.122 12 C 0.023 3.977 13 H 0.024 0.976 14 C -0.519 4.519 15 H 0.030 0.970 16 C 0.013 3.987 17 N -0.952 5.952 18 Si 0.954 3.046 19 H -0.267 1.267 20 H -0.300 1.300 21 H -0.248 1.248 22 C 0.094 3.906 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.388 0.612 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.394 0.606 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.111 0.889 35 H 0.026 0.974 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.034 0.966 40 H 0.265 0.735 41 H 0.052 0.948 42 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.874 -1.824 -19.896 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.051 4.051 3 C 0.026 3.974 4 O -0.394 6.394 5 C 0.016 3.984 6 O -0.389 6.389 7 C -0.057 4.057 8 N -0.258 5.258 9 C -0.083 4.083 10 C -0.151 4.151 11 C -0.160 4.160 12 C 0.004 3.996 13 H 0.042 0.958 14 C -0.558 4.558 15 H 0.048 0.952 16 C -0.184 4.184 17 N -0.593 5.593 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.228 1.228 21 H -0.172 1.172 22 C -0.034 4.034 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.236 0.764 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.244 0.756 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.129 0.871 35 H 0.044 0.956 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -10.185 -1.559 -19.416 21.981 hybrid contribution 0.568 -0.190 0.766 0.972 sum -9.617 -1.749 -18.650 21.057 Atomic orbital electron populations 1.21923 0.92726 1.02360 1.02382 1.20557 0.96727 0.94956 0.92880 1.21943 0.80371 0.96095 0.98959 1.86357 1.20567 1.34781 1.97722 1.21939 0.97254 0.94427 0.84735 1.86376 1.77595 1.58175 1.16791 1.21962 1.00063 0.94235 0.89418 1.61760 1.02300 1.56778 1.04915 1.22610 0.90638 0.96533 0.98555 1.21653 0.98341 1.00437 0.94712 1.21922 0.96702 0.99925 0.97432 1.19039 0.92372 0.95748 0.92457 0.95830 1.21347 1.12733 1.21841 0.99841 0.95210 1.25848 0.98459 0.98803 0.95278 1.70055 1.38933 1.43561 1.06704 0.85763 0.79087 0.78360 0.78716 1.19291 1.22774 1.17157 1.21745 0.94466 0.96400 0.90785 0.91624 0.91595 0.91552 0.93877 0.93654 0.76422 0.93857 0.92621 0.75622 0.92107 0.93671 0.87086 0.95591 0.89957 0.91809 0.93517 0.94809 0.92585 0.92945 0.97008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 6.96 71.98 0.50 -2.27 16 2 C -0.05 -1.19 0.51 -52.18 -0.03 -1.21 16 3 C 0.10 2.69 5.49 71.98 0.40 3.08 16 4 O -0.59 -15.93 12.42 -148.98 -1.85 -17.78 16 5 C 0.09 1.91 5.77 71.98 0.42 2.32 16 6 O -0.58 -10.69 12.09 -148.98 -1.80 -12.50 16 7 C 0.07 1.99 4.00 86.30 0.35 2.33 16 8 N -0.53 -17.49 3.50 -896.08 -3.14 -20.63 16 9 C 0.04 1.27 4.96 86.37 0.43 1.69 16 10 C -0.11 -3.65 6.11 30.69 0.19 -3.46 16 11 C -0.12 -5.16 4.73 30.68 0.15 -5.02 16 12 C 0.02 1.10 1.85 -11.49 -0.02 1.08 16 13 H 0.02 1.18 7.21 -2.39 -0.02 1.16 16 14 C -0.52 -30.46 9.15 25.60 0.23 -30.22 16 15 H 0.03 1.93 7.99 -2.91 -0.02 1.91 16 16 C 0.01 0.76 5.45 84.65 0.46 1.22 16 17 N -0.95 -60.84 13.96 21.45 0.30 -60.54 16 18 Si 0.95 46.27 24.35 68.60 1.67 47.94 16 19 H -0.27 -12.27 6.89 99.48 0.69 -11.59 16 20 H -0.30 -14.47 7.11 99.48 0.71 -13.77 16 21 H -0.25 -11.26 6.53 99.48 0.65 -10.61 16 22 C 0.09 3.91 4.59 86.33 0.40 4.30 16 23 H 0.06 1.38 6.29 -2.39 -0.02 1.37 16 24 H 0.07 1.30 7.29 -2.38 -0.02 1.28 16 25 H 0.07 1.19 7.58 -2.39 -0.02 1.18 16 26 H 0.04 1.06 7.68 -2.39 -0.02 1.04 16 27 H 0.05 1.31 7.46 -2.39 -0.02 1.29 16 28 H 0.39 7.79 9.12 -74.05 -0.68 7.11 16 29 H 0.04 0.96 7.68 -2.39 -0.02 0.95 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.39 3.68 9.12 -74.06 -0.68 3.01 16 32 H 0.06 1.89 7.35 -2.39 -0.02 1.87 16 33 H 0.05 1.14 7.77 -2.39 -0.02 1.12 16 34 H 0.11 2.57 3.99 -2.39 -0.01 2.56 16 35 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.03 1.49 3.34 -2.38 -0.01 1.48 16 40 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 41 H 0.05 2.30 7.90 -2.39 -0.02 2.28 16 42 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -70.79 311.34 -1.77 -72.56 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -0.41 Total: 17.09 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 3.46 Total: -26.15 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -2.84 Total: -81.17 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -3.65 Total: -30.27 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.67 Total: 47.94 kcal Total: -70.79 -1.77 -72.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397625467.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.728 kcal (2) G-P(sol) polarization free energy of solvation -70.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds